Wall clock time and date at job start Tue Mar 31 2020 06:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00137 * 2 1 4 4 C 1.50700 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.52995 * 109.47384 * 94.99540 * 4 2 1 6 6 N 1.46496 * 109.47373 * 179.97438 * 5 4 2 7 7 C 1.40006 * 120.00396 * 179.97438 * 6 5 4 8 8 C 1.38641 * 120.09903 * 0.02562 * 7 6 5 9 9 C 1.38280 * 120.00547 * 180.02562 * 8 7 6 10 10 C 1.38268 * 120.20490 * 359.97438 * 9 8 7 11 11 C 1.38241 * 120.19705 * 359.97336 * 10 9 8 12 12 C 1.38729 * 119.99523 * 0.02963 * 11 10 9 13 13 S 1.76194 * 120.10217 * 179.97438 * 12 11 10 14 14 C 1.81396 * 103.00211 * 6.23015 * 13 12 11 15 15 H 1.09001 * 109.47062 * 309.43389 * 14 13 12 16 16 C 1.53002 * 109.47208 * 69.43132 * 14 13 12 17 17 C 1.50698 * 109.47379 * 189.43443 * 14 13 12 18 18 H 1.08005 * 120.00123 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00381 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99399 * 359.97438 * 19 17 14 21 21 Si 1.86797 * 120.00151 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47159 * 90.00062 * 21 19 17 23 23 H 1.48504 * 109.46742 * 209.99890 * 21 19 17 24 24 H 1.48492 * 109.47375 * 329.99711 * 21 19 17 25 25 H 1.07999 * 119.99776 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.00010 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47432 * 270.00710 * 3 2 1 28 28 H 1.09000 * 109.46819 * 30.00581 * 3 2 1 29 29 H 1.08996 * 109.47428 * 150.00105 * 3 2 1 30 30 H 1.09001 * 109.46906 * 334.99216 * 4 2 1 31 31 H 1.09002 * 109.46857 * 214.99865 * 4 2 1 32 32 H 1.09001 * 109.47364 * 59.99956 * 5 4 2 33 33 H 1.09002 * 109.47390 * 300.00000 * 5 4 2 34 34 H 0.97004 * 119.99890 * 359.97438 * 6 5 4 35 35 H 1.08002 * 119.99546 * 0.02562 * 8 7 6 36 36 H 1.08004 * 119.89887 * 180.27223 * 9 8 7 37 37 H 1.08005 * 119.89839 * 180.02562 * 10 9 8 38 38 H 1.07998 * 120.00627 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.47161 * 307.43875 * 16 14 13 40 40 H 1.09001 * 109.46962 * 67.43683 * 16 14 13 41 41 H 1.08994 * 109.47392 * 187.44181 * 16 14 13 42 42 H 0.97007 * 119.99369 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4272 -1.6834 -1.4377 6 7 3.1602 -2.9518 -1.4382 7 6 3.6013 -3.5050 -2.6463 8 6 3.3461 -2.8539 -3.8434 9 6 3.7822 -3.4023 -5.0356 10 6 4.4737 -4.5996 -5.0387 11 6 4.7338 -5.2555 -3.8499 12 6 4.3001 -4.7127 -2.6491 13 16 4.6294 -5.5466 -1.1323 14 6 5.6966 -6.9207 -1.6454 15 1 5.2335 -7.4487 -2.4789 16 6 7.0578 -6.3743 -2.0809 17 6 5.8828 -7.8706 -0.4903 18 1 5.4071 -7.6676 0.4578 19 6 6.6614 -8.9982 -0.6435 20 7 7.2411 -9.2450 -1.7980 21 14 6.8927 -10.1751 0.7884 22 1 5.8273 -11.2091 0.7565 23 1 8.2213 -10.8299 0.6813 24 1 6.8136 -9.4221 2.0658 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 2.2451 1.6198 -1.0277 28 1 1.4744 2.0647 0.5139 29 1 3.0159 1.1748 0.5138 30 1 1.4385 -2.0856 0.4335 31 1 2.9742 -1.1991 0.5889 32 1 3.0522 -0.9029 -1.8718 33 1 1.5165 -1.7894 -2.0272 34 1 3.3400 -3.4084 -0.6015 35 1 2.8065 -1.9183 -3.8448 36 1 3.5862 -2.8914 -5.9667 37 1 4.8124 -5.0233 -5.9726 38 1 5.2746 -6.1903 -3.8558 39 1 6.9136 -5.5908 -2.8248 40 1 7.5777 -5.9626 -1.2158 41 1 7.6517 -7.1800 -2.5122 42 1 7.7892 -10.0381 -1.9056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288659812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:23 Heat of formation + Delta-G solvation = 12.662370 kcal Electronic energy + Delta-G solvation = -20191.731167 eV Core-core repulsion = 17261.877159 eV Total energy + Delta-G solvation = -2929.854008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25070 -38.01053 -36.26584 -35.70854 -32.76413 -31.76392 -31.22458 -28.60731 -28.01278 -27.38010 -24.81480 -23.62409 -23.12916 -22.12993 -19.59060 -18.91137 -18.00856 -17.44479 -17.23714 -16.60500 -16.31055 -15.88623 -15.37681 -15.24031 -14.97715 -14.78681 -14.52564 -14.39706 -14.03526 -13.84917 -13.69461 -13.18143 -12.95460 -12.89486 -12.83881 -12.55509 -12.49002 -12.39515 -12.22385 -12.17958 -11.87168 -11.57646 -11.33177 -10.96036 -10.78600 -10.51808 -10.36457 -9.94624 -8.78028 -8.25211 -7.82015 -6.41340 0.44730 0.71776 0.99471 1.29619 1.40635 1.41055 1.52704 1.95890 2.37280 2.57663 2.94905 3.04706 3.93154 3.96181 4.01406 4.07650 4.26248 4.34233 4.51066 4.57229 4.59678 4.62384 4.70082 4.76650 4.82469 4.84670 4.86538 4.97550 5.02276 5.06352 5.09638 5.16990 5.29831 5.33195 5.50719 5.57242 5.71298 5.73232 5.74408 5.96190 5.98505 6.00488 6.45452 6.61011 6.73263 7.25875 8.81212 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.003746 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.636708 B = 7472.695949 C = 8740.690277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.120 4.120 4 C -0.095 4.095 5 C 0.137 3.863 6 N -0.749 5.749 7 C 0.219 3.781 8 C -0.187 4.187 9 C -0.077 4.077 10 C -0.169 4.169 11 C -0.106 4.106 12 C -0.165 4.165 13 S -0.191 6.191 14 C 0.102 3.898 15 H 0.020 0.980 16 C -0.120 4.120 17 C -0.535 4.535 18 H 0.058 0.942 19 C 0.026 3.974 20 N -0.910 5.910 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.268 1.268 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.398 0.602 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.068 0.932 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 18.543 -1.856 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.131 4.131 3 C -0.177 4.177 4 C -0.132 4.132 5 C 0.014 3.986 6 N -0.379 5.379 7 C 0.110 3.890 8 C -0.212 4.212 9 C -0.098 4.098 10 C -0.190 4.190 11 C -0.131 4.131 12 C -0.281 4.281 13 S 0.053 5.947 14 C -0.026 4.026 15 H 0.038 0.962 16 C -0.180 4.180 17 C -0.574 4.574 18 H 0.076 0.924 19 C -0.176 4.176 20 N -0.548 5.548 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.193 1.193 25 H 0.130 0.870 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.165 0.835 36 H 0.173 0.827 37 H 0.153 0.847 38 H 0.123 0.877 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.519 18.804 -0.760 21.559 hybrid contribution 0.884 -1.659 -0.264 1.898 sum -9.635 17.145 -1.024 19.694 Atomic orbital electron populations 1.23881 0.95139 1.02591 1.01233 1.21631 0.95526 0.95188 1.00708 1.20903 1.00139 0.93893 1.02754 1.20814 1.00810 0.95709 0.95889 1.21328 0.95546 0.84450 0.97292 1.44939 1.62386 1.25168 1.05428 1.17530 0.93288 0.90108 0.88063 1.20814 1.07539 1.02477 0.90343 1.21228 0.95620 0.94596 0.98363 1.21057 1.03448 0.97563 0.96958 1.21162 0.99780 0.99627 0.92522 1.21419 1.09528 0.99894 0.97306 1.84567 1.64294 1.33718 1.12077 1.20740 0.93063 0.90536 0.98263 0.96166 1.21863 0.98100 0.99072 0.98915 1.20915 1.31988 1.07142 0.97325 0.92382 1.25703 0.94316 0.98754 0.98783 1.70001 1.32127 1.27659 1.25018 0.85387 0.77796 0.78491 0.79026 1.19789 1.20124 1.19284 0.87004 0.88617 0.90751 0.90875 0.91912 0.91123 0.90739 0.91572 0.91907 0.76715 0.83548 0.82651 0.84722 0.87723 0.94764 0.94833 0.91353 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 13.89 67.78 0.94 -1.78 16 2 C -0.13 -2.00 5.31 -16.49 -0.09 -2.09 16 3 C -0.12 -1.50 10.03 71.24 0.71 -0.78 16 4 C -0.09 -1.73 5.49 29.85 0.16 -1.57 16 5 C 0.14 2.85 4.90 86.38 0.42 3.27 16 6 N -0.75 -21.58 5.68 -338.84 -1.93 -23.51 16 7 C 0.22 7.28 6.66 38.24 0.25 7.53 16 8 C -0.19 -5.09 9.31 22.38 0.21 -4.88 16 9 C -0.08 -1.99 10.04 22.29 0.22 -1.77 16 10 C -0.17 -5.26 10.04 22.28 0.22 -5.04 16 11 C -0.11 -4.19 8.01 22.39 0.18 -4.01 16 12 C -0.16 -6.61 5.96 22.70 0.14 -6.47 16 13 S -0.19 -8.65 19.75 -56.49 -1.12 -9.76 16 14 C 0.10 5.35 1.98 29.85 0.06 5.41 16 15 H 0.02 1.16 6.87 -2.39 -0.02 1.15 16 16 C -0.12 -6.02 8.34 71.98 0.60 -5.42 16 17 C -0.53 -30.08 8.58 25.60 0.22 -29.86 16 18 H 0.06 3.28 7.71 -2.91 -0.02 3.26 16 19 C 0.03 1.44 5.30 84.66 0.45 1.89 16 20 N -0.91 -51.52 11.41 21.45 0.24 -51.28 16 21 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H 0.11 1.26 8.04 -2.91 -0.02 1.24 16 26 H 0.10 1.40 7.99 -2.91 -0.02 1.37 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.76 8.06 -2.39 -0.02 0.74 16 29 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 30 H 0.07 1.36 7.99 -2.39 -0.02 1.34 16 31 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 32 H 0.07 1.27 7.95 -2.39 -0.02 1.25 16 33 H 0.06 1.24 7.95 -2.39 -0.02 1.23 16 34 H 0.40 12.39 7.02 -92.71 -0.65 11.74 16 35 H 0.15 3.06 6.74 -2.91 -0.02 3.04 16 36 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.10 4.63 5.00 -2.91 -0.01 4.61 16 39 H 0.03 1.57 6.09 -2.39 -0.01 1.55 16 40 H 0.03 1.67 8.13 -2.39 -0.02 1.65 16 41 H 0.07 3.68 6.31 -2.39 -0.02 3.66 16 42 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -61.88 352.13 4.29 -57.59 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.35 Total: 27.19 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 4.71 Total: -45.57 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -1.68 Total: -74.79 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.12 Total: -9.76 kcal Total: -61.88 4.29 -57.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288659812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.253 kcal (2) G-P(sol) polarization free energy of solvation -61.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds