Wall clock time and date at job start Tue Mar 31 2020 08:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48499 * 109.47318 * 270.00468 * 3 2 1 5 5 H 1.48501 * 109.46907 * 30.00432 * 3 2 1 6 6 H 1.48500 * 109.47305 * 150.00216 * 3 2 1 7 7 C 1.37878 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99727 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99977 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46948 * 178.06742 * 9 7 2 11 11 C 1.46898 * 111.00116 * 63.63927 * 10 9 7 12 12 C 1.50693 * 109.47353 * 71.70006 * 11 10 9 13 13 C 1.34521 * 125.78479 * 90.00296 * 12 11 10 14 14 C 1.41383 * 106.83774 * 180.02562 * 13 12 11 15 15 C 1.34516 * 106.84057 * 359.97438 * 14 13 12 16 16 O 1.34299 * 108.42314 * 359.74278 * 15 14 13 17 17 C 1.46906 * 110.99543 * 299.68455 * 10 9 7 18 18 C 1.52995 * 109.46859 * 293.95155 * 17 10 9 19 19 C 1.53381 * 109.35982 * 295.43410 * 18 17 10 20 20 C 1.53225 * 109.18425 * 176.37706 * 19 18 17 21 21 C 1.51274 * 108.69262 * 54.55335 * 20 19 18 22 22 O 1.20765 * 120.84620 * 128.53747 * 21 20 19 23 23 C 1.51269 * 118.30146 * 308.55000 * 21 20 19 24 24 C 1.52958 * 109.41267 * 175.00322 * 18 17 10 25 25 H 0.97001 * 119.99754 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47163 * 58.06530 * 9 7 2 27 27 H 1.09008 * 109.47141 * 298.06112 * 9 7 2 28 28 H 1.09004 * 109.47021 * 191.70475 * 11 10 9 29 29 H 1.09000 * 109.46901 * 311.70055 * 11 10 9 30 30 H 1.08000 * 126.57901 * 0.03251 * 13 12 11 31 31 H 1.07998 * 126.57744 * 179.97438 * 14 13 12 32 32 H 1.08003 * 125.78536 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.46431 * 173.95683 * 17 10 9 34 34 H 1.08994 * 109.47036 * 53.95327 * 17 10 9 35 35 H 1.09003 * 109.41275 * 55.14829 * 18 17 10 36 36 H 1.09001 * 109.73181 * 56.38189 * 19 18 17 37 37 H 1.08996 * 109.44528 * 296.20598 * 19 18 17 38 38 H 1.08998 * 109.63121 * 294.73878 * 20 19 18 39 39 H 1.09003 * 109.62582 * 174.35669 * 20 19 18 40 40 H 1.08994 * 109.62354 * 171.06906 * 23 21 20 41 41 H 1.08999 * 109.62580 * 291.44446 * 23 21 20 42 42 H 1.09000 * 109.48410 * 63.72511 * 24 18 17 43 43 H 1.09007 * 109.48322 * 303.68221 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5783 0.0451 11 6 3.6022 -3.3184 -1.1594 12 6 4.3991 -2.8249 -2.3393 13 6 5.5825 -3.3156 -2.7498 14 6 5.9672 -2.5625 -3.8829 15 6 4.9957 -1.6572 -4.0974 16 8 4.0457 -1.8248 -3.1630 17 6 3.5368 -3.2606 1.2604 18 6 4.1755 -2.6074 2.4876 19 6 5.6938 -2.8205 2.4448 20 6 6.3386 -2.0883 3.6263 21 6 5.6773 -2.5541 4.9046 22 8 6.3382 -2.9446 5.8369 23 6 4.1672 -2.5186 4.9851 24 6 3.5970 -3.2354 3.7567 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6507 0.8709 27 1 3.8746 -0.7103 -0.9081 28 1 3.7916 -4.3816 -1.0120 29 1 2.5400 -3.1612 -1.3471 30 1 6.1330 -4.1287 -2.3002 31 1 6.8682 -2.6898 -4.4646 32 1 4.9800 -0.9234 -4.8896 33 1 3.8222 -4.3118 1.2183 34 1 2.4520 -3.1811 1.3296 35 1 3.9610 -1.5387 2.4821 36 1 6.0945 -2.4268 1.5107 37 1 5.9128 -3.8860 2.5141 38 1 6.1978 -1.0135 3.5118 39 1 7.4039 -2.3164 3.6611 40 1 3.8369 -3.0260 5.8914 41 1 3.8256 -1.4836 4.9999 42 1 3.8653 -4.2912 3.7948 43 1 2.5115 -3.1360 3.7492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289576967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:10 Heat of formation + Delta-G solvation = -31.132933 kcal Electronic energy + Delta-G solvation = -23965.927701 eV Core-core repulsion = 20591.421715 eV Total energy + Delta-G solvation = -3374.505986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.22 seconds Orbital eigenvalues (eV) -42.05722 -39.79625 -37.78633 -35.62481 -32.65111 -32.35730 -31.09416 -30.70568 -29.19037 -27.40751 -25.01708 -23.69936 -22.95649 -21.50636 -21.21073 -19.98173 -19.35765 -18.90358 -17.24851 -16.61030 -15.89484 -15.69219 -15.29185 -14.82748 -14.74018 -14.52194 -14.25807 -13.97003 -13.88511 -13.31173 -12.71891 -12.50453 -12.42593 -12.36379 -12.26750 -12.10097 -11.91465 -11.57379 -11.29324 -11.23366 -11.08796 -10.91209 -10.49759 -10.49470 -10.23621 -10.12145 -9.80905 -9.58559 -9.47129 -9.23829 -8.63254 -8.05043 -7.33185 -6.15645 -4.14968 2.03266 2.20794 3.02618 3.24108 3.31757 3.34094 3.52078 4.22008 4.35191 4.71244 4.89705 4.98551 5.12371 5.18487 5.19365 5.26096 5.40534 5.42244 5.43919 5.59487 5.63593 5.67011 5.86174 5.89888 6.03005 6.05844 6.12134 6.15275 6.20255 6.22698 6.27551 6.38512 6.57030 6.59865 6.68259 6.73173 6.84973 6.96012 7.07613 7.47254 7.56287 7.67946 7.89091 7.93686 8.36624 8.84520 9.47621 10.97068 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.006029 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.642355 B = 4643.410926 C = 6145.192774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.150 3.850 10 N -0.528 5.528 11 C 0.128 3.872 12 C 0.030 3.970 13 C -0.218 4.218 14 C -0.220 4.220 15 C -0.055 4.055 16 O -0.163 6.163 17 C 0.066 3.934 18 C -0.087 4.087 19 C -0.099 4.099 20 C -0.172 4.172 21 C 0.365 3.635 22 O -0.473 6.473 23 C -0.169 4.169 24 C -0.106 4.106 25 H 0.263 0.737 26 H 0.034 0.966 27 H 0.025 0.975 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.193 0.807 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.816 -5.506 0.316 11.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.126 4.126 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.093 0.907 9 C 0.023 3.977 10 N -0.251 5.251 11 C 0.000 4.000 12 C -0.022 4.022 13 C -0.238 4.238 14 C -0.239 4.239 15 C -0.123 4.123 16 O -0.058 6.058 17 C -0.062 4.062 18 C -0.106 4.106 19 C -0.136 4.136 20 C -0.209 4.209 21 C 0.242 3.758 22 O -0.348 6.348 23 C -0.207 4.207 24 C -0.144 4.144 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.210 0.790 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.245 -5.419 0.856 11.622 hybrid contribution -0.364 1.078 -0.327 1.184 sum 9.881 -4.341 0.529 10.806 Atomic orbital electron populations 1.69916 1.06306 1.26976 1.50352 1.24892 0.94588 0.99016 0.94132 0.86887 0.80409 0.83913 0.78752 1.20205 1.21370 1.18843 1.21566 0.90471 0.94539 1.52004 0.90684 1.20270 0.94661 0.85670 0.97091 1.62452 1.58693 1.04047 0.99921 1.20440 0.97846 0.96063 0.85653 1.22491 0.96322 0.89569 0.93783 1.21432 0.97459 1.05090 0.99823 1.21707 1.01502 0.99733 1.00937 1.23915 0.89598 1.03002 0.95827 1.84171 1.42749 1.45018 1.33843 1.21945 0.99237 0.95947 0.89048 1.21260 0.94077 1.01901 0.93345 1.21570 0.95228 0.99619 0.97229 1.22357 1.00943 1.02758 0.94887 1.25042 0.91938 0.71472 0.87318 1.90370 1.68348 1.36292 1.39774 1.22302 0.93984 1.03747 1.00629 1.21521 1.01292 0.99096 0.92517 0.92690 0.94833 0.95653 0.89646 0.91139 0.84091 0.84269 0.78984 0.92609 0.92455 0.89623 0.89254 0.92339 0.88520 0.89986 0.89834 0.88277 0.91917 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.96 55.43 0.77 -25.45 16 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 20.79 27.51 -169.99 -4.68 16.11 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.26 -5.97 6.49 56.52 0.37 -5.61 16 7 C -0.55 -14.07 7.89 -34.44 -0.27 -14.34 16 8 H 0.08 2.08 6.19 -52.49 -0.32 1.76 16 9 C 0.15 3.30 3.83 -4.97 -0.02 3.28 16 10 N -0.53 -9.60 4.04 -237.52 -0.96 -10.56 16 11 C 0.13 2.25 5.35 -4.98 -0.03 2.23 16 12 C 0.03 0.53 6.10 -35.63 -0.22 0.31 16 13 C -0.22 -3.40 10.81 -39.70 -0.43 -3.83 16 14 C -0.22 -3.15 10.91 -39.70 -0.43 -3.58 16 15 C -0.06 -0.84 12.09 29.42 0.36 -0.48 16 16 O -0.16 -3.14 10.07 5.72 0.06 -3.08 16 17 C 0.07 1.06 4.13 -3.82 -0.02 1.05 16 18 C -0.09 -1.25 2.01 -90.45 -0.18 -1.43 16 19 C -0.10 -1.27 5.18 -26.42 -0.14 -1.41 16 20 C -0.17 -2.09 6.15 -27.49 -0.17 -2.26 16 21 C 0.37 4.90 6.72 -28.47 -0.19 4.71 16 22 O -0.47 -7.76 17.89 5.99 0.11 -7.66 16 23 C -0.17 -2.01 6.17 -27.49 -0.17 -2.18 16 24 C -0.11 -1.32 5.22 -26.63 -0.14 -1.46 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.03 0.75 5.28 -51.93 -0.27 0.47 16 27 H 0.03 0.61 6.45 -51.92 -0.34 0.27 16 28 H 0.09 1.25 7.82 -51.93 -0.41 0.84 16 29 H 0.07 1.44 6.40 -51.93 -0.33 1.10 16 30 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.19 2.18 8.06 -52.48 -0.42 1.76 16 33 H 0.06 0.78 7.86 -51.93 -0.41 0.37 16 34 H 0.06 1.07 6.35 -51.93 -0.33 0.74 16 35 H 0.09 1.42 6.33 -51.93 -0.33 1.09 16 36 H 0.09 1.25 7.66 -51.93 -0.40 0.86 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -30.46 342.02 -8.22 -38.67 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.53 Total: 4.21 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.14 Total: -17.40 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.19 Total: -36.01 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.16 Total: -10.74 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.68 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.46 -8.22 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289576967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.542 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.22 seconds