Wall clock time and date at job start Tue Mar 31 2020 08:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48499 * 109.47318 * 270.00468 * 3 2 1 5 5 H 1.48501 * 109.46907 * 30.00432 * 3 2 1 6 6 H 1.48500 * 109.47305 * 150.00216 * 3 2 1 7 7 C 1.37878 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99727 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99977 * 179.97438 * 7 2 1 10 10 N 1.46905 * 109.46948 * 178.06742 * 9 7 2 11 11 C 1.46898 * 111.00116 * 63.63927 * 10 9 7 12 12 C 1.50693 * 109.47353 * 71.70006 * 11 10 9 13 13 C 1.34521 * 125.78479 * 90.00296 * 12 11 10 14 14 C 1.41383 * 106.83774 * 180.02562 * 13 12 11 15 15 C 1.34516 * 106.84057 * 359.97438 * 14 13 12 16 16 O 1.34299 * 108.42314 * 359.74278 * 15 14 13 17 17 C 1.46906 * 110.99543 * 299.68455 * 10 9 7 18 18 C 1.52995 * 109.46859 * 293.95155 * 17 10 9 19 19 C 1.53381 * 109.35982 * 295.43410 * 18 17 10 20 20 C 1.53225 * 109.18425 * 176.37706 * 19 18 17 21 21 C 1.51274 * 108.69262 * 54.55335 * 20 19 18 22 22 O 1.20765 * 120.84620 * 128.53747 * 21 20 19 23 23 C 1.51269 * 118.30146 * 308.55000 * 21 20 19 24 24 C 1.52958 * 109.41267 * 175.00322 * 18 17 10 25 25 H 0.97001 * 119.99754 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47163 * 58.06530 * 9 7 2 27 27 H 1.09008 * 109.47141 * 298.06112 * 9 7 2 28 28 H 1.09004 * 109.47021 * 191.70475 * 11 10 9 29 29 H 1.09000 * 109.46901 * 311.70055 * 11 10 9 30 30 H 1.08000 * 126.57901 * 0.03251 * 13 12 11 31 31 H 1.07998 * 126.57744 * 179.97438 * 14 13 12 32 32 H 1.08003 * 125.78536 * 180.02562 * 15 14 13 33 33 H 1.09001 * 109.46431 * 173.95683 * 17 10 9 34 34 H 1.08994 * 109.47036 * 53.95327 * 17 10 9 35 35 H 1.09003 * 109.41275 * 55.14829 * 18 17 10 36 36 H 1.09001 * 109.73181 * 56.38189 * 19 18 17 37 37 H 1.08996 * 109.44528 * 296.20598 * 19 18 17 38 38 H 1.08998 * 109.63121 * 294.73878 * 20 19 18 39 39 H 1.09003 * 109.62582 * 174.35669 * 20 19 18 40 40 H 1.08994 * 109.62354 * 171.06906 * 23 21 20 41 41 H 1.08999 * 109.62580 * 291.44446 * 23 21 20 42 42 H 1.09000 * 109.48410 * 63.72511 * 24 18 17 43 43 H 1.09007 * 109.48322 * 303.68221 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5783 0.0451 11 6 3.6022 -3.3184 -1.1594 12 6 4.3991 -2.8249 -2.3393 13 6 5.5825 -3.3156 -2.7498 14 6 5.9672 -2.5625 -3.8829 15 6 4.9957 -1.6572 -4.0974 16 8 4.0457 -1.8248 -3.1630 17 6 3.5368 -3.2606 1.2604 18 6 4.1755 -2.6074 2.4876 19 6 5.6938 -2.8205 2.4448 20 6 6.3386 -2.0883 3.6263 21 6 5.6773 -2.5541 4.9046 22 8 6.3382 -2.9446 5.8369 23 6 4.1672 -2.5186 4.9851 24 6 3.5970 -3.2354 3.7567 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6507 0.8709 27 1 3.8746 -0.7103 -0.9081 28 1 3.7916 -4.3816 -1.0120 29 1 2.5400 -3.1612 -1.3471 30 1 6.1330 -4.1287 -2.3002 31 1 6.8682 -2.6898 -4.4646 32 1 4.9800 -0.9234 -4.8896 33 1 3.8222 -4.3118 1.2183 34 1 2.4520 -3.1811 1.3296 35 1 3.9610 -1.5387 2.4821 36 1 6.0945 -2.4268 1.5107 37 1 5.9128 -3.8860 2.5141 38 1 6.1978 -1.0135 3.5118 39 1 7.4039 -2.3164 3.6611 40 1 3.8369 -3.0260 5.8914 41 1 3.8256 -1.4836 4.9999 42 1 3.8653 -4.2912 3.7948 43 1 2.5115 -3.1360 3.7492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289576967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:05 Heat of formation + Delta-G solvation = -49.381068 kcal Electronic energy + Delta-G solvation = -23966.719000 eV Core-core repulsion = 20591.421715 eV Total energy + Delta-G solvation = -3375.297284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.31118 -40.91316 -39.16466 -36.91163 -34.53998 -33.75009 -32.09620 -31.93699 -30.67907 -28.98816 -26.29584 -25.33647 -24.02482 -22.84404 -22.42764 -21.18543 -20.83154 -20.01334 -19.10193 -17.95352 -17.19932 -16.87771 -16.48651 -16.32691 -16.08247 -16.01570 -15.56191 -15.39272 -15.12108 -14.52931 -14.36985 -13.92606 -13.61429 -13.53101 -13.41562 -13.35816 -13.17632 -13.12552 -12.76971 -12.64524 -12.47414 -12.22505 -12.13357 -11.82238 -11.71430 -11.59619 -11.34097 -11.15819 -10.75168 -10.65786 -10.31134 -9.29987 -8.91781 -8.27676 -6.29377 0.95897 0.97352 1.33626 1.35790 1.44872 1.86554 2.34140 2.34622 3.09011 3.20413 3.39644 3.83864 3.92009 3.96570 3.99799 4.19983 4.28731 4.32718 4.42980 4.51550 4.53851 4.59610 4.65054 4.68318 4.75831 4.96997 5.00557 5.04624 5.07092 5.13209 5.14874 5.15068 5.17356 5.23242 5.31072 5.38389 5.50697 5.57666 5.63800 5.81421 6.10897 6.32817 6.41391 6.48278 6.51539 6.76084 7.36311 8.88184 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011627 B = 0.006029 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.642355 B = 4643.410926 C = 6145.192774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.018 3.982 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.533 4.533 8 H 0.042 0.958 9 C 0.164 3.836 10 N -0.516 5.516 11 C 0.131 3.869 12 C -0.010 4.010 13 C -0.204 4.204 14 C -0.217 4.217 15 C -0.065 4.065 16 O -0.204 6.204 17 C 0.067 3.933 18 C -0.084 4.084 19 C -0.089 4.089 20 C -0.167 4.167 21 C 0.371 3.629 22 O -0.504 6.504 23 C -0.166 4.166 24 C -0.100 4.100 25 H 0.263 0.737 26 H 0.039 0.961 27 H 0.012 0.988 28 H 0.117 0.883 29 H 0.030 0.970 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.224 0.776 33 H 0.084 0.916 34 H 0.024 0.976 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.655 -5.842 0.216 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.572 4.572 8 H 0.060 0.940 9 C 0.037 3.963 10 N -0.238 5.238 11 C 0.003 3.997 12 C -0.060 4.060 13 C -0.224 4.224 14 C -0.236 4.236 15 C -0.132 4.132 16 O -0.100 6.100 17 C -0.061 4.061 18 C -0.103 4.103 19 C -0.127 4.127 20 C -0.205 4.205 21 C 0.250 3.750 22 O -0.381 6.381 23 C -0.203 4.203 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.030 0.970 28 H 0.135 0.865 29 H 0.049 0.951 30 H 0.182 0.818 31 H 0.190 0.810 32 H 0.240 0.760 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.105 -5.773 0.756 14.341 hybrid contribution -1.259 1.074 -0.380 1.698 sum 11.846 -4.699 0.376 12.750 Atomic orbital electron populations 1.70060 1.08069 1.27735 1.52824 1.25709 0.95265 1.02683 0.94372 0.85949 0.80043 0.79700 0.78730 1.20395 1.21167 1.16509 1.21812 0.92520 0.93061 1.49775 0.93991 1.19994 0.91746 0.88250 0.96343 1.62484 1.57800 1.02531 1.01021 1.20459 0.95660 0.97794 0.85748 1.22581 0.97817 0.90932 0.94645 1.21776 0.96247 1.04854 0.99548 1.22115 1.02250 0.98702 1.00532 1.24708 0.89008 1.03851 0.95612 1.84132 1.44671 1.46039 1.35179 1.22025 0.97392 0.97642 0.89032 1.21202 0.95403 1.00378 0.93273 1.21458 0.93600 1.00495 0.97125 1.22339 1.01320 1.03106 0.93742 1.25281 0.92342 0.70207 0.87135 1.90370 1.68996 1.37844 1.40901 1.22293 0.93129 1.04264 1.00640 1.21451 1.00735 0.99875 0.91767 0.92819 0.94343 0.97028 0.86468 0.95134 0.81788 0.80965 0.75960 0.89734 0.95777 0.91938 0.90029 0.91044 0.87732 0.89032 0.88948 0.87590 0.90446 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.44 13.96 21.45 0.30 -57.14 16 2 C 0.02 0.99 5.47 84.65 0.46 1.46 16 3 Si 0.93 43.21 27.51 68.60 1.89 45.09 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.24 -10.25 6.49 99.48 0.65 -9.60 16 7 C -0.53 -28.40 7.89 25.60 0.20 -28.19 16 8 H 0.04 2.47 6.19 -2.91 -0.02 2.46 16 9 C 0.16 7.28 3.83 85.56 0.33 7.60 16 10 N -0.52 -18.53 4.04 -905.36 -3.66 -22.19 16 11 C 0.13 4.64 5.35 85.56 0.46 5.10 16 12 C -0.01 -0.33 6.10 24.83 0.15 -0.18 16 13 C -0.20 -5.84 10.81 22.19 0.24 -5.60 16 14 C -0.22 -5.56 10.91 22.19 0.24 -5.32 16 15 C -0.06 -1.85 12.09 66.97 0.81 -1.04 16 16 O -0.20 -7.84 10.07 -2.46 -0.02 -7.86 16 17 C 0.07 2.11 4.13 86.30 0.36 2.47 16 18 C -0.08 -2.29 2.01 -10.68 -0.02 -2.31 16 19 C -0.09 -2.07 5.18 30.80 0.16 -1.91 16 20 C -0.17 -3.65 6.15 30.11 0.19 -3.47 16 21 C 0.37 9.18 6.72 29.46 0.20 9.38 16 22 O -0.50 -15.68 17.89 -1.46 -0.03 -15.71 16 23 C -0.17 -3.66 6.17 30.11 0.19 -3.47 16 24 C -0.10 -2.34 5.22 30.66 0.16 -2.18 16 25 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 26 H 0.04 1.68 5.28 -2.39 -0.01 1.67 16 27 H 0.01 0.56 6.45 -2.38 -0.02 0.54 16 28 H 0.12 3.28 7.82 -2.39 -0.02 3.27 16 29 H 0.03 1.31 6.40 -2.39 -0.02 1.30 16 30 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 31 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.22 4.53 8.06 -2.91 -0.02 4.51 16 33 H 0.08 2.19 7.86 -2.39 -0.02 2.17 16 34 H 0.02 0.93 6.35 -2.39 -0.02 0.91 16 35 H 0.06 2.01 6.33 -2.39 -0.02 2.00 16 36 H 0.08 2.07 7.66 -2.39 -0.02 2.05 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -68.18 342.02 3.53 -64.65 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.94 Total: 20.84 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 4.12 Total: -27.68 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -3.36 Total: -79.33 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.89 Total: 45.09 kcal Total: -68.18 3.53 -64.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289576967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.266 kcal (2) G-P(sol) polarization free energy of solvation -68.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds