Wall clock time and date at job start Tue Mar 31 2020 07:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00281 * 2 1 4 4 H 1.48505 * 109.47134 * 269.99743 * 3 2 1 5 5 H 1.48496 * 109.47079 * 29.99546 * 3 2 1 6 6 H 1.48493 * 109.47228 * 149.99534 * 3 2 1 7 7 C 1.37876 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46969 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46803 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00268 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99969 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00169 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47003 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.47166 * 304.99705 * 15 14 13 17 17 C 1.52992 * 109.47448 * 65.00472 * 15 14 13 18 18 C 1.52997 * 109.47482 * 184.99813 * 17 15 14 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 15 20 20 C 1.50707 * 109.46925 * 185.00360 * 15 14 13 21 21 C 1.38237 * 120.00000 * 299.73082 * 20 15 14 22 22 C 1.38232 * 119.99708 * 179.81086 * 21 20 15 23 23 C 1.38228 * 120.00187 * 0.39316 * 22 21 20 24 24 C 1.38231 * 120.00006 * 359.85615 * 23 22 21 25 25 C 1.38230 * 120.00353 * 359.95675 * 24 23 22 26 26 H 0.97004 * 119.99825 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47426 * 59.99737 * 9 7 2 28 28 H 1.09005 * 109.46836 * 299.99652 * 9 7 2 29 29 H 1.08996 * 109.47310 * 60.00472 * 10 9 7 30 30 H 1.08996 * 109.47245 * 299.99531 * 10 9 7 31 31 H 0.97005 * 119.99739 * 0.02562 * 13 11 10 32 32 H 1.09009 * 109.46534 * 60.00560 * 14 13 11 33 33 H 1.08996 * 109.47143 * 300.00913 * 14 13 11 34 34 H 1.09002 * 109.47103 * 64.99566 * 17 15 14 35 35 H 1.08998 * 109.46862 * 305.00378 * 17 15 14 36 36 H 1.09002 * 109.47153 * 59.99783 * 18 17 15 37 37 H 1.09001 * 109.46832 * 299.99974 * 18 17 15 38 38 H 0.96701 * 113.99881 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.99862 * 359.97438 * 21 20 15 40 40 H 1.08004 * 119.99239 * 180.22645 * 22 21 20 41 41 H 1.08006 * 120.00031 * 179.83633 * 23 22 21 42 42 H 1.08007 * 120.00072 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00416 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9672 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4329 -7.4031 0.0019 15 6 2.4272 -8.5660 0.0018 16 1 3.1107 -8.4596 -0.8406 17 6 3.2228 -8.5570 1.3085 18 6 4.3008 -9.6414 1.2569 19 8 5.0436 -9.6334 2.4776 20 6 1.6776 -9.8677 -0.1209 21 6 0.7521 -10.2257 0.8415 22 6 0.0618 -11.4179 0.7268 23 6 0.3028 -12.2557 -0.3458 24 6 1.2321 -11.9001 -1.3055 25 6 1.9196 -10.7062 -1.1929 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 3.1355 -6.1344 0.0004 32 1 0.8054 -7.4611 -0.8875 33 1 0.8072 -7.4605 0.8925 34 1 2.5509 -8.7521 2.1444 35 1 3.6935 -7.5827 1.4406 36 1 4.9727 -9.4464 0.4210 37 1 3.8300 -10.6156 1.1249 38 1 5.7461 -10.2968 2.5150 39 1 0.5665 -9.5728 1.6815 40 1 -0.6639 -11.6958 1.4768 41 1 -0.2346 -13.1884 -0.4340 42 1 1.4207 -12.5550 -2.1434 43 1 2.6459 -10.4286 -1.9425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291607103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:55 Heat of formation + Delta-G solvation = -88.955450 kcal Electronic energy + Delta-G solvation = -22348.374514 eV Core-core repulsion = 18971.361155 eV Total energy + Delta-G solvation = -3377.013358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12979 -38.96641 -37.41399 -35.89059 -33.42389 -33.18352 -31.18111 -30.94865 -30.28930 -28.09197 -25.61073 -23.64287 -23.14438 -22.57691 -21.43741 -20.27265 -19.58560 -17.66427 -17.25871 -16.75039 -16.09290 -15.75675 -15.43938 -15.22907 -15.06894 -14.90688 -14.39142 -14.26878 -13.84054 -13.57578 -13.41256 -13.11417 -12.87464 -12.44294 -12.15229 -12.06814 -11.92369 -11.56984 -11.36215 -11.13752 -11.09218 -10.92676 -10.89459 -10.57516 -10.24947 -9.92538 -9.63655 -9.17993 -9.16865 -9.04827 -8.89752 -8.75098 -8.29521 -5.93689 -3.97978 1.07151 1.14558 3.29928 3.34995 3.40562 3.43013 3.45892 3.61873 3.82811 4.39741 4.49943 4.54634 4.70336 4.73822 4.83119 4.86609 4.97408 5.05930 5.15224 5.25361 5.28288 5.33005 5.41185 5.58207 5.65499 5.71538 5.77489 5.82967 5.90788 5.99821 6.20859 6.26324 6.26742 6.28108 6.37039 6.71661 6.75491 6.92918 7.32159 7.77106 7.89580 7.91067 8.10139 8.41525 8.81903 9.10827 9.65403 11.17304 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.002719 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.535883 B =10297.199883 C =11083.183247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.534 6.534 13 N -0.745 5.745 14 C 0.130 3.870 15 C -0.056 4.056 16 H 0.087 0.913 17 C -0.114 4.114 18 C 0.077 3.923 19 O -0.574 6.574 20 C -0.074 4.074 21 C -0.110 4.110 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.378 0.622 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.097 -27.538 -0.187 28.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.409 6.409 13 N -0.400 5.400 14 C 0.006 3.994 15 C -0.075 4.075 16 H 0.105 0.895 17 C -0.152 4.152 18 C -0.001 4.001 19 O -0.379 6.379 20 C -0.074 4.074 21 C -0.128 4.128 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.133 4.133 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.231 0.769 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.225 0.775 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.609 -26.910 -0.046 27.710 hybrid contribution 1.244 0.334 -0.228 1.309 sum 7.854 -26.576 -0.274 27.713 Atomic orbital electron populations 1.70003 1.06053 1.26548 1.50262 1.25031 0.94828 0.99226 0.95348 0.86590 0.79775 0.83532 0.78040 1.20692 1.21232 1.19893 1.21230 0.92927 0.91036 1.51288 0.92611 1.18897 0.93190 0.89384 0.98612 1.21863 1.00709 0.91958 1.02464 1.21563 0.88654 0.85619 0.74393 1.90672 1.14496 1.87648 1.48133 1.46232 1.09996 1.05527 1.78202 1.21229 0.93750 0.81815 1.02607 1.20355 0.96499 0.91927 0.98747 0.89457 1.21605 0.96930 0.99493 0.97148 1.22197 0.93171 0.98670 0.86042 1.86491 1.51189 1.61457 1.38811 1.19674 0.97196 0.95423 0.95154 1.21083 0.95968 0.96798 0.98907 1.21166 0.99559 0.94550 0.98243 1.21161 0.98430 0.99765 0.94855 1.21127 0.96795 0.96849 0.99041 1.21070 1.00183 0.94477 0.97592 0.92970 0.95851 0.95818 0.90242 0.90275 0.76944 0.91413 0.91509 0.90611 0.90306 0.93740 0.93535 0.77533 0.85820 0.86012 0.86228 0.86131 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 11 C 0.51 9.92 7.83 -10.98 -0.09 9.83 16 12 O -0.53 -12.85 15.98 5.56 0.09 -12.76 16 13 N -0.74 -10.38 5.23 -60.29 -0.32 -10.69 16 14 C 0.13 1.62 4.81 -4.04 -0.02 1.60 16 15 C -0.06 -0.51 2.07 -91.77 -0.19 -0.70 16 16 H 0.09 0.68 7.88 -51.93 -0.41 0.27 16 17 C -0.11 -1.04 4.87 -26.74 -0.13 -1.17 16 18 C 0.08 0.62 6.86 37.16 0.25 0.87 16 19 O -0.57 -5.19 13.66 -35.23 -0.48 -5.67 16 20 C -0.07 -0.67 3.76 -104.62 -0.39 -1.06 16 21 C -0.11 -1.03 8.71 -39.58 -0.34 -1.37 16 22 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 23 C -0.12 -0.98 10.05 -39.59 -0.40 -1.37 16 24 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 25 C -0.12 -0.95 9.67 -39.58 -0.38 -1.33 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.40 4.33 7.65 -40.82 -0.31 4.02 16 32 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.07 0.90 7.58 -51.93 -0.39 0.51 16 34 H 0.08 0.76 7.21 -51.93 -0.37 0.39 16 35 H 0.08 0.76 7.07 -51.93 -0.37 0.39 16 36 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.36 7.38 -51.93 -0.38 -0.02 16 38 H 0.38 1.68 9.12 45.56 0.42 2.10 16 39 H 0.12 1.13 7.13 -52.49 -0.37 0.75 16 40 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.12 0.81 7.95 -52.49 -0.42 0.39 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -36.19 360.18 -8.70 -44.89 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.96 Total: 2.18 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -3.17 Total: -13.21 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.42 Total: -37.71 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.39 Total: -18.43 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.19 -8.70 -44.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291607103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.067 kcal (2) G-P(sol) polarization free energy of solvation -36.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds