Wall clock time and date at job start Tue Mar 31 2020 07:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00281 * 2 1 4 4 H 1.48505 * 109.47134 * 269.99743 * 3 2 1 5 5 H 1.48496 * 109.47079 * 29.99546 * 3 2 1 6 6 H 1.48493 * 109.47228 * 149.99534 * 3 2 1 7 7 C 1.37876 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46969 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46803 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00268 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99969 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00169 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47003 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.47166 * 304.99705 * 15 14 13 17 17 C 1.52992 * 109.47448 * 65.00472 * 15 14 13 18 18 C 1.52997 * 109.47482 * 184.99813 * 17 15 14 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 15 20 20 C 1.50707 * 109.46925 * 185.00360 * 15 14 13 21 21 C 1.38237 * 120.00000 * 299.73082 * 20 15 14 22 22 C 1.38232 * 119.99708 * 179.81086 * 21 20 15 23 23 C 1.38228 * 120.00187 * 0.39316 * 22 21 20 24 24 C 1.38231 * 120.00006 * 359.85615 * 23 22 21 25 25 C 1.38230 * 120.00353 * 359.95675 * 24 23 22 26 26 H 0.97004 * 119.99825 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47426 * 59.99737 * 9 7 2 28 28 H 1.09005 * 109.46836 * 299.99652 * 9 7 2 29 29 H 1.08996 * 109.47310 * 60.00472 * 10 9 7 30 30 H 1.08996 * 109.47245 * 299.99531 * 10 9 7 31 31 H 0.97005 * 119.99739 * 0.02562 * 13 11 10 32 32 H 1.09009 * 109.46534 * 60.00560 * 14 13 11 33 33 H 1.08996 * 109.47143 * 300.00913 * 14 13 11 34 34 H 1.09002 * 109.47103 * 64.99566 * 17 15 14 35 35 H 1.08998 * 109.46862 * 305.00378 * 17 15 14 36 36 H 1.09002 * 109.47153 * 59.99783 * 18 17 15 37 37 H 1.09001 * 109.46832 * 299.99974 * 18 17 15 38 38 H 0.96701 * 113.99881 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.99862 * 359.97438 * 21 20 15 40 40 H 1.08004 * 119.99239 * 180.22645 * 22 21 20 41 41 H 1.08006 * 120.00031 * 179.83633 * 23 22 21 42 42 H 1.08007 * 120.00072 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00416 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9672 0.0011 13 7 2.1655 -6.1344 0.0008 14 6 1.4329 -7.4031 0.0019 15 6 2.4272 -8.5660 0.0018 16 1 3.1107 -8.4596 -0.8406 17 6 3.2228 -8.5570 1.3085 18 6 4.3008 -9.6414 1.2569 19 8 5.0436 -9.6334 2.4776 20 6 1.6776 -9.8677 -0.1209 21 6 0.7521 -10.2257 0.8415 22 6 0.0618 -11.4179 0.7268 23 6 0.3028 -12.2557 -0.3458 24 6 1.2321 -11.9001 -1.3055 25 6 1.9196 -10.7062 -1.1929 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8894 31 1 3.1355 -6.1344 0.0004 32 1 0.8054 -7.4611 -0.8875 33 1 0.8072 -7.4605 0.8925 34 1 2.5509 -8.7521 2.1444 35 1 3.6935 -7.5827 1.4406 36 1 4.9727 -9.4464 0.4210 37 1 3.8300 -10.6156 1.1249 38 1 5.7461 -10.2968 2.5150 39 1 0.5665 -9.5728 1.6815 40 1 -0.6639 -11.6958 1.4768 41 1 -0.2346 -13.1884 -0.4340 42 1 1.4207 -12.5550 -2.1434 43 1 2.6459 -10.4286 -1.9425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291607103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:55 Heat of formation + Delta-G solvation = -114.958155 kcal Electronic energy + Delta-G solvation = -22349.502076 eV Core-core repulsion = 18971.361155 eV Total energy + Delta-G solvation = -3378.140920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04789 -40.24957 -38.10911 -36.84641 -35.55096 -34.35570 -32.93252 -31.78987 -30.94055 -29.26276 -27.40768 -24.75689 -23.81086 -23.43402 -23.01711 -21.31134 -20.84000 -18.84346 -18.31079 -17.90012 -17.34190 -17.02239 -16.65399 -16.50207 -16.30233 -15.80212 -15.70247 -15.14796 -14.96233 -14.62223 -14.29659 -14.20290 -14.05626 -13.88852 -13.60357 -13.22897 -13.06909 -12.81101 -12.67247 -12.46746 -12.34863 -12.06893 -11.90795 -11.76906 -11.65013 -11.60239 -11.30039 -10.85604 -10.74846 -10.56591 -10.07731 -9.79832 -9.61788 -8.17511 -6.31614 0.42944 0.51980 1.42367 1.45337 1.56279 1.72369 2.24753 2.45348 2.88636 3.15442 3.19766 3.67559 3.85183 3.96183 4.09335 4.16604 4.19496 4.25877 4.31572 4.38792 4.47168 4.53274 4.54875 4.59130 4.64423 4.68041 4.85119 4.88305 5.02365 5.09616 5.16105 5.18467 5.22296 5.44814 5.52163 5.60254 5.64153 5.65236 5.70846 5.86291 6.12928 6.18287 6.60923 6.87123 6.91924 7.35284 7.38894 8.95291 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023087 B = 0.002719 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.535883 B =10297.199883 C =11083.183247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.510 3.490 12 O -0.591 6.591 13 N -0.716 5.716 14 C 0.131 3.869 15 C -0.039 4.039 16 H 0.109 0.891 17 C -0.114 4.114 18 C 0.081 3.919 19 O -0.597 6.597 20 C -0.085 4.085 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.125 4.125 25 C -0.119 4.119 26 H 0.263 0.737 27 H -0.018 1.018 28 H -0.019 1.019 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.416 0.584 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.397 0.603 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.143 0.857 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.093 -28.577 -0.982 30.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.371 5.371 14 C 0.007 3.993 15 C -0.058 4.058 16 H 0.128 0.872 17 C -0.152 4.152 18 C 0.004 3.996 19 O -0.406 6.406 20 C -0.085 4.085 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.000 1.000 28 H -0.001 1.001 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.254 0.746 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.246 0.754 39 H 0.133 0.867 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.688 -28.010 -0.840 29.650 hybrid contribution 0.276 0.543 0.035 0.610 sum 9.964 -27.467 -0.805 29.229 Atomic orbital electron populations 1.70186 1.08348 1.27794 1.51546 1.26160 0.95735 1.04016 0.94668 0.85308 0.78655 0.77654 0.78547 1.19631 1.21231 1.17878 1.21726 0.94027 0.91593 1.50682 0.90522 1.18693 0.93745 0.92551 0.94643 1.21639 0.99294 0.90028 1.04929 1.21360 0.87799 0.86829 0.74149 1.90659 1.16818 1.88437 1.51146 1.45899 1.10944 1.04571 1.75639 1.21297 0.94541 0.82132 1.01319 1.20198 0.95707 0.90289 0.99570 0.87246 1.21574 0.97117 0.99893 0.96569 1.22152 0.93049 0.98097 0.86342 1.86436 1.52128 1.62592 1.39435 1.19692 0.97543 0.95615 0.95691 1.21181 0.96875 0.97366 0.99207 1.21385 0.99849 0.94511 0.99054 1.21470 0.98455 1.00319 0.94445 1.21461 0.96266 0.96992 0.99530 1.21328 1.00482 0.94435 0.97433 0.92874 0.99971 1.00070 0.87782 0.87536 0.74606 0.92685 0.92995 0.92190 0.90728 0.91818 0.93359 0.75358 0.86682 0.85049 0.84301 0.83910 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.37 13.29 21.45 0.28 -60.08 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.34 4.26 29.85 0.13 2.47 16 10 C -0.12 -4.83 5.64 29.85 0.17 -4.66 16 11 C 0.51 20.06 7.83 87.66 0.69 20.75 16 12 O -0.59 -29.81 15.98 -3.03 -0.05 -29.86 16 13 N -0.72 -19.26 5.23 -463.05 -2.42 -21.68 16 14 C 0.13 3.24 4.81 86.38 0.42 3.66 16 15 C -0.04 -0.64 2.07 -11.54 -0.02 -0.66 16 16 H 0.11 1.35 7.88 -2.39 -0.02 1.33 16 17 C -0.11 -1.93 4.87 30.59 0.15 -1.78 16 18 C 0.08 1.12 6.86 71.98 0.49 1.62 16 19 O -0.60 -9.74 13.66 -148.98 -2.04 -11.77 16 20 C -0.08 -1.44 3.76 -19.86 -0.07 -1.52 16 21 C -0.13 -2.41 8.71 22.27 0.19 -2.22 16 22 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 23 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 24 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 25 C -0.12 -1.69 9.67 22.27 0.22 -1.47 16 26 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 27 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 28 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 29 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 31 H 0.42 8.03 7.65 -92.70 -0.71 7.32 16 32 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.05 1.47 7.58 -2.39 -0.02 1.45 16 34 H 0.06 1.21 7.21 -2.39 -0.02 1.19 16 35 H 0.07 1.31 7.07 -2.39 -0.02 1.29 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.05 0.66 7.38 -2.39 -0.02 0.64 16 38 H 0.40 2.74 9.12 -74.06 -0.68 2.06 16 39 H 0.12 2.25 7.13 -2.91 -0.02 2.23 16 40 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 43 H 0.14 1.40 7.95 -2.91 -0.02 1.37 16 Total: -1.00 -82.04 360.18 1.14 -80.89 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.38 Total: 15.56 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 3.72 Total: -19.80 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.14 Total: -81.76 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -2.08 Total: -41.63 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -82.04 1.14 -80.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291607103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.066 kcal (2) G-P(sol) polarization free energy of solvation -82.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds