Wall clock time and date at job start Tue Mar 31 2020 07:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00037 * 2 1 4 4 H 1.48497 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46790 * 299.99174 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99202 * 3 2 1 7 7 C 1.37875 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46624 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.73045 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72962 * 13 11 10 15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11 16 16 H 1.09007 * 109.46905 * 304.99283 * 15 14 13 17 17 O 1.42894 * 109.47603 * 64.99900 * 15 14 13 18 18 C 1.52999 * 109.46790 * 185.00148 * 15 14 13 19 19 C 1.52997 * 109.47282 * 175.00060 * 18 15 14 20 20 C 1.50692 * 109.47517 * 179.97438 * 19 18 15 21 21 C 1.38240 * 120.00227 * 269.72284 * 20 19 18 22 22 C 1.38229 * 120.00240 * 179.76428 * 21 20 19 23 23 C 1.38235 * 120.00285 * 0.50608 * 22 21 20 24 24 C 1.38244 * 119.99699 * 359.75167 * 23 22 21 25 25 C 1.38234 * 120.00060 * 359.97438 * 24 23 22 26 26 H 0.97001 * 119.99843 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46645 * 60.00513 * 9 7 2 28 28 H 1.08993 * 109.47357 * 300.00275 * 9 7 2 29 29 H 1.09001 * 109.46782 * 60.00894 * 10 9 7 30 30 H 1.08993 * 109.47555 * 300.00451 * 10 9 7 31 31 H 0.97005 * 119.99846 * 359.72750 * 13 11 10 32 32 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 33 33 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 34 34 H 0.96698 * 113.99844 * 59.99373 * 17 15 14 35 35 H 1.09000 * 109.46775 * 294.99475 * 18 15 14 36 36 H 1.08998 * 109.47583 * 54.99242 * 18 15 14 37 37 H 1.09005 * 109.46733 * 299.99903 * 19 18 15 38 38 H 1.08998 * 109.47479 * 59.99118 * 19 18 15 39 39 H 1.08007 * 119.99440 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.00134 * 180.23411 * 22 21 20 41 41 H 1.07991 * 120.00407 * 179.72279 * 23 22 21 42 42 H 1.07998 * 119.99673 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00586 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2127 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4918 -4.9671 0.0012 12 8 0.2790 -4.9672 0.0065 13 7 2.1658 -6.1344 0.0018 14 6 1.4333 -7.4031 0.0084 15 6 2.4276 -8.5659 0.0084 16 1 3.1086 -8.4617 -0.8364 17 8 3.1744 -8.5543 1.2266 18 6 1.6663 -9.8878 -0.1105 19 6 2.6636 -11.0412 -0.2360 20 6 1.9139 -12.3432 -0.3524 21 6 1.5910 -13.0591 0.7852 22 6 0.8990 -14.2509 0.6787 23 6 0.5390 -14.7323 -0.5661 24 6 0.8665 -14.0192 -1.7042 25 6 1.5536 -12.8244 -1.5973 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5571 -0.8898 28 1 0.6240 -2.5567 0.8902 29 1 2.8719 -3.6043 0.8906 30 1 2.8721 -3.6043 -0.8893 31 1 3.1358 -6.1343 -0.0021 32 1 0.8103 -7.4583 0.9011 33 1 0.8030 -7.4634 -0.8788 34 1 2.6313 -8.6432 2.0217 35 1 1.0516 -10.0341 0.7776 36 1 1.0282 -9.8614 -0.9938 37 1 3.2785 -10.8949 -1.1241 38 1 3.3018 -11.0675 0.6473 39 1 1.8765 -12.6853 1.7575 40 1 0.6435 -14.8083 1.5677 41 1 0.0023 -15.6657 -0.6496 42 1 0.5856 -14.3955 -2.6767 43 1 1.8099 -12.2674 -2.4864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291901938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:16 Heat of formation + Delta-G solvation = -94.610843 kcal Electronic energy + Delta-G solvation = -21592.753077 eV Core-core repulsion = 18215.494482 eV Total energy + Delta-G solvation = -3377.258595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.78605 -39.25417 -37.92259 -34.24594 -34.04550 -33.41986 -31.22903 -31.19492 -30.59796 -28.01754 -25.68121 -24.03110 -22.91534 -21.99567 -21.54164 -21.06854 -19.54035 -17.18383 -17.03544 -16.66229 -16.46863 -15.75872 -15.53076 -15.44303 -15.03510 -14.77481 -14.38326 -14.16910 -13.80071 -13.52366 -13.47764 -13.01508 -12.95576 -12.79163 -12.30546 -12.14118 -11.86321 -11.56809 -11.42437 -11.14295 -11.12093 -11.09097 -10.93051 -10.57791 -10.34127 -9.93888 -9.64733 -9.26544 -9.16631 -9.04603 -8.93926 -8.77511 -8.30758 -5.94736 -3.98949 1.00896 1.05721 3.27815 3.33691 3.38088 3.40893 3.44196 3.53595 4.14507 4.31958 4.46591 4.49128 4.52820 4.66897 4.71613 4.77360 4.92808 5.01713 5.14110 5.20009 5.23748 5.38451 5.40246 5.50425 5.52031 5.67619 5.71101 5.81510 5.85235 5.92401 6.12657 6.17684 6.26135 6.28156 6.30605 6.66880 6.72488 6.92469 7.34930 7.76528 7.88313 7.92557 8.08961 8.40704 8.80850 9.10046 9.64575 11.16290 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.048396 B = 0.001964 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.424531 B =14251.402850 C =14443.494537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.538 6.538 13 N -0.740 5.740 14 C 0.088 3.912 15 C 0.097 3.903 16 H 0.106 0.894 17 O -0.558 6.558 18 C -0.142 4.142 19 C -0.077 4.077 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.260 0.740 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.401 0.599 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.377 0.623 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 -30.154 -0.396 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.413 6.413 13 N -0.394 5.394 14 C -0.037 4.037 15 C 0.037 3.963 16 H 0.123 0.877 17 O -0.363 6.363 18 C -0.181 4.181 19 C -0.114 4.114 20 C -0.080 4.080 21 C -0.136 4.136 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.136 4.136 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.235 0.765 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.224 0.776 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.986 -29.954 -0.806 30.377 hybrid contribution 0.263 0.734 0.303 0.837 sum 5.248 -29.220 -0.503 29.692 Atomic orbital electron populations 1.70013 1.06059 1.26442 1.50375 1.25036 0.94834 0.99258 0.95343 0.86528 0.80010 0.83812 0.77559 1.19743 1.21033 1.21031 1.21276 0.92997 0.91018 1.51147 0.92519 1.18905 0.93198 0.89432 0.98586 1.21859 1.00693 0.91913 1.02518 1.21588 0.88620 0.85722 0.74356 1.90666 1.14540 1.87707 1.48421 1.46109 1.10256 1.05156 1.77896 1.21949 0.94962 0.84005 1.02793 1.22205 0.93395 0.92335 0.88326 0.87663 1.86578 1.37865 1.96257 1.15608 1.22211 0.98406 0.93811 1.03648 1.20549 0.96953 0.90394 1.03523 1.19966 0.98435 0.96409 0.93209 1.21088 0.99065 0.95202 0.98224 1.21164 0.98546 0.96394 0.97607 1.21158 1.00576 1.00077 0.92759 1.21169 0.98628 0.95288 0.98594 1.21100 0.98996 0.96374 0.97174 0.93028 0.95865 0.95841 0.90205 0.90266 0.76505 0.91648 0.91063 0.77582 0.91042 0.90454 0.90870 0.90146 0.86070 0.86154 0.86252 0.86137 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.70 13.29 55.43 0.74 -26.97 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.84 16 11 C 0.51 9.93 7.83 -10.98 -0.09 9.84 16 12 O -0.54 -12.87 15.98 5.56 0.09 -12.78 16 13 N -0.74 -10.40 5.50 -60.30 -0.33 -10.73 16 14 C 0.09 1.02 5.31 -4.04 -0.02 1.00 16 15 C 0.10 0.79 3.00 -26.73 -0.08 0.71 16 16 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 17 O -0.56 -4.79 12.82 -35.23 -0.45 -5.24 16 18 C -0.14 -1.00 4.87 -26.73 -0.13 -1.13 16 19 C -0.08 -0.52 5.24 -27.89 -0.15 -0.67 16 20 C -0.08 -0.62 5.13 -104.62 -0.54 -1.16 16 21 C -0.12 -0.89 9.70 -39.58 -0.38 -1.27 16 22 C -0.12 -0.85 10.05 -39.59 -0.40 -1.25 16 23 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 24 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 25 C -0.12 -0.90 9.70 -39.58 -0.38 -1.29 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.40 4.71 8.47 -40.82 -0.35 4.36 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.38 2.30 9.04 45.56 0.41 2.71 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.08 0.56 7.76 -51.93 -0.40 0.16 16 39 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 40 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -35.54 366.75 -9.31 -44.85 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.21 Total: 2.11 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.65 Total: -13.59 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.40 Total: -37.70 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.36 Total: -18.02 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.54 -9.31 -44.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291901938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.757 kcal (2) G-P(sol) polarization free energy of solvation -35.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds