Wall clock time and date at job start Tue Mar 31 2020 07:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00037 * 2 1 4 4 H 1.48497 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46790 * 299.99174 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.99202 * 3 2 1 7 7 C 1.37875 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46956 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46624 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.73045 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72962 * 13 11 10 15 15 C 1.53003 * 109.46708 * 180.02562 * 14 13 11 16 16 H 1.09007 * 109.46905 * 304.99283 * 15 14 13 17 17 O 1.42894 * 109.47603 * 64.99900 * 15 14 13 18 18 C 1.52999 * 109.46790 * 185.00148 * 15 14 13 19 19 C 1.52997 * 109.47282 * 175.00060 * 18 15 14 20 20 C 1.50692 * 109.47517 * 179.97438 * 19 18 15 21 21 C 1.38240 * 120.00227 * 269.72284 * 20 19 18 22 22 C 1.38229 * 120.00240 * 179.76428 * 21 20 19 23 23 C 1.38235 * 120.00285 * 0.50608 * 22 21 20 24 24 C 1.38244 * 119.99699 * 359.75167 * 23 22 21 25 25 C 1.38234 * 120.00060 * 359.97438 * 24 23 22 26 26 H 0.97001 * 119.99843 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46645 * 60.00513 * 9 7 2 28 28 H 1.08993 * 109.47357 * 300.00275 * 9 7 2 29 29 H 1.09001 * 109.46782 * 60.00894 * 10 9 7 30 30 H 1.08993 * 109.47555 * 300.00451 * 10 9 7 31 31 H 0.97005 * 119.99846 * 359.72750 * 13 11 10 32 32 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 33 33 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 34 34 H 0.96698 * 113.99844 * 59.99373 * 17 15 14 35 35 H 1.09000 * 109.46775 * 294.99475 * 18 15 14 36 36 H 1.08998 * 109.47583 * 54.99242 * 18 15 14 37 37 H 1.09005 * 109.46733 * 299.99903 * 19 18 15 38 38 H 1.08998 * 109.47479 * 59.99118 * 19 18 15 39 39 H 1.08007 * 119.99440 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.00134 * 180.23411 * 22 21 20 41 41 H 1.07991 * 120.00407 * 179.72279 * 23 22 21 42 42 H 1.07998 * 119.99673 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00586 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8905 2.3964 -1.2127 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4918 -4.9671 0.0012 12 8 0.2790 -4.9672 0.0065 13 7 2.1658 -6.1344 0.0018 14 6 1.4333 -7.4031 0.0084 15 6 2.4276 -8.5659 0.0084 16 1 3.1086 -8.4617 -0.8364 17 8 3.1744 -8.5543 1.2266 18 6 1.6663 -9.8878 -0.1105 19 6 2.6636 -11.0412 -0.2360 20 6 1.9139 -12.3432 -0.3524 21 6 1.5910 -13.0591 0.7852 22 6 0.8990 -14.2509 0.6787 23 6 0.5390 -14.7323 -0.5661 24 6 0.8665 -14.0192 -1.7042 25 6 1.5536 -12.8244 -1.5973 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5571 -0.8898 28 1 0.6240 -2.5567 0.8902 29 1 2.8719 -3.6043 0.8906 30 1 2.8721 -3.6043 -0.8893 31 1 3.1358 -6.1343 -0.0021 32 1 0.8103 -7.4583 0.9011 33 1 0.8030 -7.4634 -0.8788 34 1 2.6313 -8.6432 2.0217 35 1 1.0516 -10.0341 0.7776 36 1 1.0282 -9.8614 -0.9938 37 1 3.2785 -10.8949 -1.1241 38 1 3.3018 -11.0675 0.6473 39 1 1.8765 -12.6853 1.7575 40 1 0.6435 -14.8083 1.5677 41 1 0.0023 -15.6657 -0.6496 42 1 0.5856 -14.3955 -2.6767 43 1 1.8099 -12.2674 -2.4864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291901938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:14 Heat of formation + Delta-G solvation = -119.412580 kcal Electronic energy + Delta-G solvation = -21593.828561 eV Core-core repulsion = 18215.494482 eV Total energy + Delta-G solvation = -3378.334079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.79113 -40.19166 -38.80601 -35.61722 -35.27789 -34.77712 -33.04023 -31.73679 -31.48294 -29.06612 -27.41117 -25.03508 -23.43158 -23.35515 -22.66538 -21.72621 -21.04866 -18.83719 -17.84304 -17.61528 -17.33936 -17.26650 -16.52690 -16.42760 -16.26156 -15.93581 -15.86601 -14.97953 -14.65880 -14.53359 -14.26232 -14.19990 -13.99199 -13.90393 -13.55737 -13.23788 -13.21904 -12.86341 -12.82930 -12.44408 -12.08455 -11.96902 -11.92541 -11.78152 -11.63801 -11.62249 -11.28520 -11.14263 -10.65587 -10.58108 -10.07321 -9.79575 -9.54999 -8.18228 -6.32289 0.47552 0.52625 1.42426 1.43916 1.57363 1.71818 2.24188 2.44904 2.90279 3.14760 3.47278 3.63692 3.83159 3.94844 4.08413 4.11292 4.19080 4.28370 4.33952 4.37561 4.50166 4.55500 4.58017 4.65103 4.68800 4.73788 4.83349 4.90444 5.09315 5.14325 5.18392 5.25820 5.33806 5.45756 5.52752 5.60981 5.63295 5.65891 5.77111 5.85578 6.16480 6.17873 6.61261 6.79602 6.86538 7.35413 7.38394 8.94700 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.048396 B = 0.001964 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.424531 B =14251.402850 C =14443.494537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.510 3.490 12 O -0.592 6.592 13 N -0.714 5.714 14 C 0.084 3.916 15 C 0.114 3.886 16 H 0.115 0.885 17 O -0.565 6.565 18 C -0.135 4.135 19 C -0.070 4.070 20 C -0.091 4.091 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.130 4.130 25 C -0.132 4.132 26 H 0.263 0.737 27 H -0.018 1.018 28 H -0.018 1.018 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.417 0.583 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.388 0.612 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.933 -30.860 -0.378 31.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.160 4.160 11 C 0.298 3.702 12 O -0.472 6.472 13 N -0.367 5.367 14 C -0.040 4.040 15 C 0.055 3.945 16 H 0.133 0.867 17 O -0.372 6.372 18 C -0.173 4.173 19 C -0.107 4.107 20 C -0.092 4.092 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.148 4.148 25 C -0.150 4.150 26 H 0.071 0.929 27 H 0.000 1.000 28 H 0.000 1.000 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.237 0.763 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.440 -30.714 -0.779 31.612 hybrid contribution -0.512 0.853 0.310 1.042 sum 6.928 -29.861 -0.469 30.658 Atomic orbital electron populations 1.70187 1.08321 1.27747 1.51569 1.26160 0.95754 1.04015 0.94649 0.85249 0.79277 0.77994 0.77555 1.17615 1.20598 1.20619 1.21763 0.94036 0.91631 1.50639 0.90575 1.18698 0.93734 0.92536 0.94673 1.21634 0.99312 0.90237 1.04811 1.21331 0.87763 0.86891 0.74223 1.90652 1.16725 1.88470 1.51393 1.45822 1.11034 1.04534 1.75318 1.22172 0.95777 0.83804 1.02249 1.22052 0.92607 0.91151 0.88703 0.86742 1.86561 1.38352 1.96157 1.16151 1.22122 0.98323 0.93159 1.03710 1.20479 0.96671 0.89776 1.03755 1.20119 0.98772 0.96860 0.93399 1.21320 0.99276 0.95520 0.98740 1.21448 0.98406 0.96539 0.98379 1.21454 1.00606 1.00780 0.92761 1.21447 0.98547 0.95330 0.99481 1.21331 0.99275 0.96809 0.97623 0.92855 0.99955 0.99974 0.87869 0.87783 0.74614 0.92241 0.91745 0.76278 0.90879 0.90604 0.90408 0.90082 0.85089 0.84652 0.84647 0.84718 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.06 13.29 21.45 0.28 -59.77 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.98 44.65 29.54 68.60 2.03 46.68 16 4 H -0.25 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 9 C 0.04 2.33 4.26 29.85 0.13 2.46 16 10 C -0.12 -4.89 5.64 29.85 0.17 -4.73 16 11 C 0.51 19.86 7.83 87.65 0.69 20.54 16 12 O -0.59 -29.37 15.98 -3.04 -0.05 -29.42 16 13 N -0.71 -18.97 5.50 -463.06 -2.55 -21.52 16 14 C 0.08 1.86 5.31 86.38 0.46 2.32 16 15 C 0.11 1.63 3.00 30.59 0.09 1.72 16 16 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 17 O -0.56 -8.28 12.82 -148.98 -1.91 -10.19 16 18 C -0.13 -1.66 4.87 30.59 0.15 -1.51 16 19 C -0.07 -0.83 5.24 29.84 0.16 -0.67 16 20 C -0.09 -1.31 5.13 -19.86 -0.10 -1.41 16 21 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 22 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 23 C -0.14 -1.80 10.05 22.27 0.22 -1.58 16 24 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 25 C -0.13 -1.89 9.70 22.27 0.22 -1.67 16 26 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 27 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 28 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 29 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 31 H 0.42 8.60 8.47 -92.70 -0.79 7.82 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.39 3.86 9.04 -74.06 -0.67 3.19 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 0.86 8.09 -2.38 -0.02 0.84 16 38 H 0.08 0.96 7.76 -2.39 -0.02 0.95 16 39 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.14 1.21 8.06 -2.92 -0.02 1.19 16 42 H 0.13 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -79.43 366.75 0.88 -78.55 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -0.46 Total: 15.90 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 3.53 Total: -20.23 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -2.26 Total: -81.29 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.96 Total: -39.60 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -79.43 0.88 -78.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291901938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.867 kcal (2) G-P(sol) polarization free energy of solvation -79.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds