Wall clock time and date at job start Tue Mar 31 2020 07:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00057 * 2 1 4 4 H 1.48497 * 109.46889 * 270.00060 * 3 2 1 5 5 H 1.48502 * 109.46961 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47184 * 149.99974 * 3 2 1 7 7 C 1.37878 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00295 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99616 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47066 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00027 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00242 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00522 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47442 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.47166 * 59.99206 * 15 14 13 17 17 O 1.42902 * 109.46684 * 300.00117 * 15 14 13 18 18 C 1.52992 * 109.47448 * 179.97438 * 15 14 13 19 19 C 1.52997 * 109.47482 * 184.99813 * 18 15 14 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 18 15 21 21 C 1.38233 * 120.00099 * 269.72808 * 20 19 18 22 22 C 1.38239 * 119.99655 * 179.76882 * 21 20 19 23 23 C 1.38230 * 120.00228 * 0.50243 * 22 21 20 24 24 C 1.38238 * 119.99995 * 359.75228 * 23 22 21 25 25 C 1.38238 * 120.00072 * 359.97438 * 24 23 22 26 26 H 0.96993 * 119.99822 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46835 * 60.00051 * 9 7 2 28 28 H 1.09003 * 109.47168 * 300.00297 * 9 7 2 29 29 H 1.09000 * 109.46950 * 60.00491 * 10 9 7 30 30 H 1.08994 * 109.47556 * 300.00165 * 10 9 7 31 31 H 0.97002 * 119.99518 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.46874 * 59.99847 * 14 13 11 33 33 H 1.09007 * 109.46588 * 299.99839 * 14 13 11 34 34 H 0.96702 * 114.00205 * 299.99242 * 17 15 14 35 35 H 1.09002 * 109.47103 * 64.99566 * 18 15 14 36 36 H 1.08998 * 109.46862 * 305.00378 * 18 15 14 37 37 H 1.09002 * 109.47153 * 59.99783 * 19 18 15 38 38 H 1.09001 * 109.46832 * 299.99974 * 19 18 15 39 39 H 1.08003 * 119.99927 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.99431 * 180.23215 * 22 21 20 41 41 H 1.07997 * 120.00220 * 179.73036 * 23 22 21 42 42 H 1.08002 * 119.99952 * 179.97438 * 24 23 22 43 43 H 1.07991 * 120.00062 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0009 12 8 6.1349 -1.5863 -0.0005 13 7 6.2025 -3.8038 -0.0014 14 6 7.6675 -3.8038 -0.0007 15 6 8.1775 -5.2463 -0.0020 16 1 7.8144 -5.7593 -0.8926 17 8 7.7006 -5.9211 1.1639 18 6 9.7074 -5.2464 -0.0020 19 6 10.2174 -6.6832 -0.1290 20 6 11.7244 -6.6832 -0.1296 21 6 12.4151 -6.5836 -1.3229 22 6 13.7975 -6.5788 -1.3229 23 6 14.4891 -6.6839 -0.1307 24 6 13.7984 -6.7888 1.0621 25 6 12.4160 -6.7880 1.0628 26 1 -0.4849 0.8400 0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 3.6579 -3.1506 -0.8908 30 1 3.6586 -3.1503 0.8892 31 1 5.7174 -4.6438 -0.0021 32 1 8.0304 -3.2905 0.8897 33 1 8.0311 -3.2895 -0.8904 34 1 7.9856 -5.5185 1.9956 35 1 10.0707 -4.8128 0.9297 36 1 10.0707 -4.6561 -0.8433 37 1 9.8540 -7.1168 -1.0607 38 1 9.8540 -7.2734 0.7124 39 1 11.8747 -6.5063 -2.2548 40 1 14.3370 -6.4972 -2.2549 41 1 15.5691 -6.6845 -0.1312 42 1 14.3388 -6.8714 1.9936 43 1 11.8764 -6.8703 1.9946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291901939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:21 Heat of formation + Delta-G solvation = -91.817526 kcal Electronic energy + Delta-G solvation = -21661.821688 eV Core-core repulsion = 18284.684220 eV Total energy + Delta-G solvation = -3377.137467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.83207 -39.36327 -38.00052 -34.30126 -34.11721 -33.45420 -31.39673 -31.25454 -30.76767 -28.18201 -25.99649 -24.05311 -22.94431 -22.00213 -21.40212 -20.97276 -19.60795 -17.36669 -17.13128 -16.81738 -16.51931 -15.97947 -15.63782 -15.50785 -15.08898 -14.90376 -14.28379 -14.01670 -13.83597 -13.57106 -13.54826 -13.08805 -13.01084 -12.92791 -12.53971 -12.32376 -12.05972 -11.60192 -11.45957 -11.40111 -11.17204 -11.12838 -10.94499 -10.42117 -10.13763 -10.02924 -9.77262 -9.29330 -9.24820 -9.15783 -9.02033 -8.88114 -8.49291 -6.01634 -4.00219 0.98053 1.02863 3.13686 3.32482 3.38741 3.44957 3.46366 3.56310 4.10685 4.26790 4.43404 4.47904 4.52114 4.63983 4.66934 4.74416 4.88166 4.97322 5.09704 5.16779 5.19817 5.33754 5.34091 5.40487 5.46086 5.64210 5.67600 5.72076 5.80824 5.85940 6.09839 6.11139 6.12715 6.14971 6.27562 6.60784 6.64064 6.72438 7.29984 7.38114 7.45280 7.78265 7.82744 8.51844 8.67449 9.01708 9.61437 11.11209 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040413 B = 0.002089 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.679319 B =13397.657357 C =13709.987137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.509 3.491 12 O -0.544 6.544 13 N -0.737 5.737 14 C 0.087 3.913 15 C 0.097 3.903 16 H 0.106 0.894 17 O -0.557 6.557 18 C -0.142 4.142 19 C -0.077 4.077 20 C -0.080 4.080 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.018 0.982 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.403 0.597 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.377 0.623 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.096 -17.519 0.190 33.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.162 4.162 11 C 0.298 3.702 12 O -0.420 6.420 13 N -0.391 5.391 14 C -0.038 4.038 15 C 0.037 3.963 16 H 0.124 0.876 17 O -0.362 6.362 18 C -0.181 4.181 19 C -0.114 4.114 20 C -0.080 4.080 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.136 4.136 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.238 0.762 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.224 0.776 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 28.103 -17.007 -0.255 32.849 hybrid contribution 0.553 0.903 0.318 1.106 sum 28.656 -16.103 0.063 32.871 Atomic orbital electron populations 1.69915 1.06276 1.26939 1.51121 1.24980 0.94720 0.99231 0.94365 0.86788 0.80600 0.83388 0.78724 1.20258 1.21452 1.18567 1.21126 0.89304 0.94576 1.51255 0.90910 1.19368 0.96394 0.90269 0.97611 1.21661 0.87951 1.03203 1.03382 1.21562 0.91629 0.82753 0.74288 1.90649 1.70871 1.31563 1.48947 1.46053 1.06054 1.09495 1.77514 1.21958 0.82195 0.96796 1.02835 1.22206 0.92703 0.91657 0.89710 0.87621 1.86584 1.77057 1.56651 1.15943 1.22207 0.95127 0.97090 1.03640 1.20549 0.90333 0.96945 1.03595 1.19963 0.95843 0.99023 0.93218 1.21100 0.94287 1.00523 0.97744 1.21169 0.94387 0.99976 0.98148 1.21159 0.99889 1.00755 0.92750 1.21171 0.94399 1.00013 0.98124 1.21088 0.94248 1.00529 0.97708 0.92740 0.95872 0.96317 0.89628 0.89558 0.76230 0.91616 0.91018 0.77559 0.91052 0.90474 0.90852 0.90112 0.86061 0.86133 0.86242 0.86141 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.80 27.47 -169.99 -4.67 18.13 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.40 5.64 -27.88 -0.16 -2.56 16 11 C 0.51 9.34 7.83 -10.99 -0.09 9.25 16 12 O -0.54 -12.16 15.98 5.56 0.09 -12.07 16 13 N -0.74 -9.75 5.45 -60.29 -0.33 -10.08 16 14 C 0.09 0.94 5.34 -4.04 -0.02 0.92 16 15 C 0.10 0.74 3.05 -26.74 -0.08 0.66 16 16 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 17 O -0.56 -4.51 12.62 -35.23 -0.44 -4.96 16 18 C -0.14 -0.93 4.88 -26.74 -0.13 -1.06 16 19 C -0.08 -0.50 5.24 -27.88 -0.15 -0.64 16 20 C -0.08 -0.60 5.13 -104.62 -0.54 -1.14 16 21 C -0.12 -0.87 9.70 -39.58 -0.38 -1.25 16 22 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 23 C -0.13 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.83 10.05 -39.58 -0.40 -1.22 16 25 C -0.12 -0.86 9.70 -39.58 -0.38 -1.24 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 28 H 0.02 0.49 7.53 -51.93 -0.39 0.09 16 29 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.40 4.49 8.35 -40.82 -0.34 4.15 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.38 2.14 9.05 45.56 0.41 2.55 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.08 0.54 7.77 -51.93 -0.40 0.13 16 39 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 40 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -35.40 362.85 -8.93 -44.33 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.17 Total: 1.02 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -3.64 Total: -14.41 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.45 Total: -37.51 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.36 Total: -17.03 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.67 Total: 18.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.40 -8.93 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291901939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.487 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds