Wall clock time and date at job start Tue Mar 31 2020 07:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00057 * 2 1 4 4 H 1.48497 * 109.46889 * 270.00060 * 3 2 1 5 5 H 1.48502 * 109.46961 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47184 * 149.99974 * 3 2 1 7 7 C 1.37878 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00295 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99616 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47066 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00027 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00242 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00522 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47442 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.47166 * 59.99206 * 15 14 13 17 17 O 1.42902 * 109.46684 * 300.00117 * 15 14 13 18 18 C 1.52992 * 109.47448 * 179.97438 * 15 14 13 19 19 C 1.52997 * 109.47482 * 184.99813 * 18 15 14 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 18 15 21 21 C 1.38233 * 120.00099 * 269.72808 * 20 19 18 22 22 C 1.38239 * 119.99655 * 179.76882 * 21 20 19 23 23 C 1.38230 * 120.00228 * 0.50243 * 22 21 20 24 24 C 1.38238 * 119.99995 * 359.75228 * 23 22 21 25 25 C 1.38238 * 120.00072 * 359.97438 * 24 23 22 26 26 H 0.96993 * 119.99822 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46835 * 60.00051 * 9 7 2 28 28 H 1.09003 * 109.47168 * 300.00297 * 9 7 2 29 29 H 1.09000 * 109.46950 * 60.00491 * 10 9 7 30 30 H 1.08994 * 109.47556 * 300.00165 * 10 9 7 31 31 H 0.97002 * 119.99518 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.46874 * 59.99847 * 14 13 11 33 33 H 1.09007 * 109.46588 * 299.99839 * 14 13 11 34 34 H 0.96702 * 114.00205 * 299.99242 * 17 15 14 35 35 H 1.09002 * 109.47103 * 64.99566 * 18 15 14 36 36 H 1.08998 * 109.46862 * 305.00378 * 18 15 14 37 37 H 1.09002 * 109.47153 * 59.99783 * 19 18 15 38 38 H 1.09001 * 109.46832 * 299.99974 * 19 18 15 39 39 H 1.08003 * 119.99927 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.99431 * 180.23215 * 22 21 20 41 41 H 1.07997 * 120.00220 * 179.73036 * 23 22 21 42 42 H 1.08002 * 119.99952 * 179.97438 * 24 23 22 43 43 H 1.07991 * 120.00062 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0009 12 8 6.1349 -1.5863 -0.0005 13 7 6.2025 -3.8038 -0.0014 14 6 7.6675 -3.8038 -0.0007 15 6 8.1775 -5.2463 -0.0020 16 1 7.8144 -5.7593 -0.8926 17 8 7.7006 -5.9211 1.1639 18 6 9.7074 -5.2464 -0.0020 19 6 10.2174 -6.6832 -0.1290 20 6 11.7244 -6.6832 -0.1296 21 6 12.4151 -6.5836 -1.3229 22 6 13.7975 -6.5788 -1.3229 23 6 14.4891 -6.6839 -0.1307 24 6 13.7984 -6.7888 1.0621 25 6 12.4160 -6.7880 1.0628 26 1 -0.4849 0.8400 0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 3.6579 -3.1506 -0.8908 30 1 3.6586 -3.1503 0.8892 31 1 5.7174 -4.6438 -0.0021 32 1 8.0304 -3.2905 0.8897 33 1 8.0311 -3.2895 -0.8904 34 1 7.9856 -5.5185 1.9956 35 1 10.0707 -4.8128 0.9297 36 1 10.0707 -4.6561 -0.8433 37 1 9.8540 -7.1168 -1.0607 38 1 9.8540 -7.2734 0.7124 39 1 11.8747 -6.5063 -2.2548 40 1 14.3370 -6.4972 -2.2549 41 1 15.5691 -6.6845 -0.1312 42 1 14.3388 -6.8714 1.9936 43 1 11.8764 -6.8703 1.9946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291901939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:20 Heat of formation + Delta-G solvation = -116.385148 kcal Electronic energy + Delta-G solvation = -21662.887020 eV Core-core repulsion = 18284.684220 eV Total energy + Delta-G solvation = -3378.202799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.81276 -40.19648 -38.81189 -35.60196 -35.26736 -34.77612 -33.33043 -31.73920 -31.53688 -29.22150 -27.57080 -24.94475 -23.43455 -23.03466 -22.63555 -21.71887 -21.05966 -19.22298 -17.88180 -17.61872 -17.44079 -17.26721 -16.46418 -16.38758 -16.20450 -15.94405 -15.89581 -14.94170 -14.81351 -14.64403 -14.48959 -14.27465 -14.01440 -13.93651 -13.56437 -13.39203 -13.26325 -12.87390 -12.86616 -12.11797 -12.08433 -11.97092 -11.96535 -11.77207 -11.76862 -11.62440 -11.40213 -11.14064 -10.78288 -10.69314 -10.07889 -9.79829 -9.55280 -8.31575 -6.34573 0.47341 0.52299 1.33133 1.34875 1.50115 1.69092 2.23926 2.34942 2.89996 3.03886 3.48570 3.63082 3.82879 3.94752 4.05509 4.09564 4.18750 4.28152 4.33821 4.37765 4.40345 4.49700 4.56849 4.64775 4.68647 4.73158 4.83192 4.90330 5.01548 5.14273 5.18219 5.25821 5.32710 5.33770 5.44633 5.49394 5.60720 5.61317 5.65695 5.76828 6.16199 6.23551 6.59097 6.71869 6.79791 7.30689 7.31960 8.84079 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040413 B = 0.002089 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.679319 B =13397.657357 C =13709.987137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.005 3.995 10 C -0.118 4.118 11 C 0.513 3.487 12 O -0.589 6.589 13 N -0.714 5.714 14 C 0.084 3.916 15 C 0.113 3.887 16 H 0.113 0.887 17 O -0.565 6.565 18 C -0.134 4.134 19 C -0.070 4.070 20 C -0.091 4.091 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.138 4.138 24 C -0.130 4.130 25 C -0.131 4.131 26 H 0.267 0.733 27 H 0.009 0.991 28 H 0.008 0.992 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.416 0.584 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.388 0.612 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.826 -18.268 0.179 34.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.068 0.932 9 C -0.033 4.033 10 C -0.158 4.158 11 C 0.301 3.699 12 O -0.469 6.469 13 N -0.367 5.367 14 C -0.040 4.040 15 C 0.053 3.947 16 H 0.131 0.869 17 O -0.373 6.373 18 C -0.173 4.173 19 C -0.107 4.107 20 C -0.091 4.091 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.148 4.148 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.254 0.746 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.237 0.763 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 29.845 -17.817 -0.259 34.760 hybrid contribution 0.027 1.027 0.336 1.081 sum 29.872 -16.790 0.077 34.268 Atomic orbital electron populations 1.70027 1.07767 1.28098 1.52474 1.25824 0.95528 1.02901 0.94267 0.85809 0.79192 0.79431 0.79156 1.19332 1.20301 1.18623 1.21445 0.91286 0.93734 1.50354 0.93188 1.19221 0.93911 0.93830 0.96331 1.21495 0.89449 0.99830 1.04986 1.21175 0.90988 0.83414 0.74294 1.90635 1.71395 1.33358 1.51558 1.45813 1.07293 1.08490 1.75105 1.22168 0.80226 0.99105 1.02481 1.22065 0.93227 0.89372 0.90010 0.86916 1.86569 1.77285 1.56809 1.16598 1.22115 0.94076 0.97275 1.03789 1.20483 0.89819 0.96677 1.03766 1.20118 0.96334 0.99288 0.93395 1.21331 0.94719 1.00735 0.98236 1.21445 0.94570 0.99811 0.98968 1.21450 1.00912 1.00491 0.92750 1.21451 0.94584 0.99809 0.98938 1.21317 0.94669 1.00689 0.98186 0.92374 0.97225 0.97317 0.88006 0.88079 0.74640 0.91973 0.91477 0.76281 0.90840 0.90502 0.90469 0.90158 0.85137 0.84719 0.84672 0.84680 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.94 47.11 27.47 68.60 1.88 48.99 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.26 -13.07 6.54 99.48 0.65 -12.41 16 7 C -0.53 -30.91 9.66 25.60 0.25 -30.67 16 8 H 0.05 3.06 7.99 -2.91 -0.02 3.04 16 9 C 0.01 0.25 3.33 29.85 0.10 0.35 16 10 C -0.12 -4.49 5.64 29.85 0.17 -4.33 16 11 C 0.51 18.13 7.83 87.66 0.69 18.81 16 12 O -0.59 -25.96 15.98 -3.04 -0.05 -26.01 16 13 N -0.71 -17.38 5.45 -463.05 -2.52 -19.90 16 14 C 0.08 1.67 5.34 86.38 0.46 2.13 16 15 C 0.11 1.46 3.05 30.59 0.09 1.55 16 16 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 17 O -0.57 -7.69 12.62 -148.98 -1.88 -9.57 16 18 C -0.13 -1.49 4.88 30.59 0.15 -1.34 16 19 C -0.07 -0.78 5.24 29.85 0.16 -0.62 16 20 C -0.09 -1.24 5.13 -19.86 -0.10 -1.34 16 21 C -0.13 -1.78 9.70 22.27 0.22 -1.57 16 22 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 23 C -0.14 -1.72 10.05 22.27 0.22 -1.49 16 24 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 25 C -0.13 -1.74 9.70 22.27 0.22 -1.53 16 26 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 27 H 0.01 0.50 7.16 -2.39 -0.02 0.48 16 28 H 0.01 0.44 7.53 -2.39 -0.02 0.42 16 29 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 31 H 0.42 8.11 8.35 -92.71 -0.77 7.33 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.39 3.45 9.05 -74.06 -0.67 2.78 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 38 H 0.08 0.91 7.77 -2.39 -0.02 0.89 16 39 H 0.13 1.40 8.06 -2.91 -0.02 1.37 16 40 H 0.13 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 42 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 43 H 0.13 1.37 8.06 -2.92 -0.02 1.35 16 Total: -1.00 -75.76 362.85 0.76 -75.00 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.50 Total: 12.30 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 3.53 Total: -21.69 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -2.22 Total: -79.01 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.93 Total: -35.59 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.88 Total: 48.99 kcal Total: -75.76 0.76 -75.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291901939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.385 kcal (2) G-P(sol) polarization free energy of solvation -75.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds