Wall clock time and date at job start Tue Mar 31 2020 07:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86791 * 119.99984 * 2 1 4 4 H 1.48504 * 109.47240 * 270.00013 * 3 2 1 5 5 H 1.48500 * 109.47640 * 30.00065 * 3 2 1 6 6 H 1.48505 * 109.47133 * 150.00109 * 3 2 1 7 7 C 1.37878 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99911 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99870 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46833 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46859 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99904 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99886 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00077 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47031 * 324.99543 * 14 13 11 16 16 C 1.52992 * 109.47408 * 84.99397 * 14 13 11 17 17 C 1.52997 * 109.47482 * 295.00294 * 16 14 13 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 14 19 19 O 1.42903 * 109.46726 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.47154 * 205.00032 * 14 13 11 21 21 C 1.38236 * 119.99912 * 319.72339 * 20 14 13 22 22 C 1.38240 * 120.00151 * 179.81152 * 21 20 14 23 23 C 1.38231 * 119.99531 * 0.39579 * 22 21 20 24 24 C 1.38233 * 120.00345 * 359.85881 * 23 22 21 25 25 C 1.38232 * 120.00107 * 359.95306 * 24 23 22 26 26 H 0.96999 * 119.99720 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47253 * 60.00211 * 9 7 2 28 28 H 1.09001 * 109.47350 * 300.00180 * 9 7 2 29 29 H 1.09006 * 109.46951 * 60.00984 * 10 9 7 30 30 H 1.09001 * 109.47363 * 300.00250 * 10 9 7 31 31 H 0.97001 * 119.99673 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.47103 * 175.00047 * 16 14 13 33 33 H 1.08998 * 109.46862 * 55.00859 * 16 14 13 34 34 H 1.09002 * 109.47153 * 59.99783 * 17 16 14 35 35 H 1.09001 * 109.46832 * 299.99974 * 17 16 14 36 36 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 37 37 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 38 38 H 0.96700 * 113.99509 * 179.97438 * 19 18 17 39 39 H 1.08006 * 119.99710 * 359.97438 * 21 20 14 40 40 H 1.07995 * 120.00176 * 180.22759 * 22 21 20 41 41 H 1.08006 * 119.99475 * 179.83643 * 23 22 21 42 42 H 1.08003 * 120.00170 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.00242 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0014 11 6 5.5286 -2.6366 0.0014 12 8 6.1350 -1.5863 0.0009 13 7 6.2024 -3.8038 0.0020 14 6 7.6674 -3.8039 0.0027 15 1 8.0310 -2.9623 -0.5870 16 6 8.1768 -3.6776 1.4397 17 6 7.7719 -2.3155 2.0066 18 6 8.2820 -2.1890 3.4436 19 8 7.9032 -0.9170 3.9732 20 6 8.1699 -5.0918 -0.5972 21 6 7.5390 -6.2853 -0.2997 22 6 7.9976 -7.4662 -0.8531 23 6 9.0920 -7.4546 -1.6973 24 6 9.7262 -6.2618 -1.9906 25 6 9.2653 -5.0805 -1.4404 26 1 -0.4850 0.8401 -0.0004 27 1 3.8753 -0.6797 0.8894 28 1 3.8746 -0.6808 -0.8905 29 1 3.6579 -3.1514 -0.8880 30 1 3.6585 -3.1495 0.8920 31 1 5.7173 -4.6439 0.0021 32 1 9.2632 -3.7668 1.4493 33 1 7.7420 -4.4691 2.0502 34 1 6.6856 -2.2263 1.9971 35 1 8.2068 -1.5241 1.3961 36 1 7.8475 -2.9804 4.0543 37 1 9.3682 -2.2780 3.4527 38 1 8.1938 -0.7676 4.8833 39 1 6.6862 -6.2947 0.3629 40 1 7.5024 -8.3981 -0.6236 41 1 9.4519 -8.3776 -2.1276 42 1 10.5816 -6.2529 -2.6500 43 1 9.7604 -4.1485 -1.6699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291929236.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:05 Heat of formation + Delta-G solvation = -107.150640 kcal Electronic energy + Delta-G solvation = -22987.683108 eV Core-core repulsion = 19609.880747 eV Total energy + Delta-G solvation = -3377.802361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33983 -39.89891 -38.12313 -36.75712 -35.51037 -33.96465 -33.14058 -32.18958 -31.72951 -28.83886 -27.63039 -24.90746 -23.74693 -23.14859 -22.29044 -21.47322 -21.06932 -19.24591 -18.35309 -18.08920 -17.62866 -17.06185 -16.66610 -16.31443 -16.20504 -15.90589 -15.57591 -15.09391 -14.88405 -14.60868 -14.50645 -14.22837 -14.05153 -13.89610 -13.58532 -13.39608 -13.07375 -12.88309 -12.74484 -12.18142 -12.01981 -11.98915 -11.95973 -11.81918 -11.75357 -11.72161 -11.39861 -10.90003 -10.78679 -10.70884 -10.07717 -9.80647 -9.64271 -8.32510 -6.34838 0.39433 0.51222 1.31482 1.33690 1.49880 1.74008 2.26471 2.34236 2.88503 3.03321 3.25044 3.72778 3.92022 3.98064 4.02077 4.09383 4.18012 4.30404 4.33578 4.38838 4.39540 4.49049 4.58086 4.61465 4.63614 4.72182 4.80909 4.90836 5.00060 5.07839 5.16466 5.20003 5.33203 5.41964 5.44896 5.46941 5.58055 5.61099 5.64689 5.73136 6.10889 6.23038 6.60113 6.71349 6.91205 7.30513 7.35408 8.83238 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.003991 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.335901 B = 7014.826020 C = 8330.741632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.015 3.985 3 Si 0.936 3.064 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.008 3.992 10 C -0.118 4.118 11 C 0.515 3.485 12 O -0.571 6.571 13 N -0.715 5.715 14 C 0.188 3.812 15 H 0.073 0.927 16 C -0.108 4.108 17 C -0.116 4.116 18 C 0.076 3.924 19 O -0.602 6.602 20 C -0.098 4.098 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.122 4.122 26 H 0.267 0.733 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.412 0.588 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.395 0.605 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.718 -17.625 2.035 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.069 0.931 9 C -0.030 4.030 10 C -0.158 4.158 11 C 0.304 3.696 12 O -0.450 6.450 13 N -0.369 5.369 14 C 0.083 3.917 15 H 0.091 0.909 16 C -0.146 4.146 17 C -0.154 4.154 18 C -0.002 4.002 19 O -0.411 6.411 20 C -0.098 4.098 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.140 4.140 26 H 0.076 0.924 27 H 0.025 0.975 28 H 0.026 0.974 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.249 0.751 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.245 0.755 39 H 0.151 0.849 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 23.739 -16.705 1.448 29.063 hybrid contribution -0.207 0.735 0.465 0.894 sum 23.531 -15.970 1.912 28.503 Atomic orbital electron populations 1.70022 1.07684 1.28062 1.52579 1.25770 0.95478 1.02709 0.94295 0.85858 0.79180 0.79716 0.79133 1.19298 1.20218 1.18957 1.21436 0.91251 0.93706 1.50216 0.93107 1.19186 0.93906 0.93756 0.96175 1.21500 0.89681 0.99816 1.04774 1.21054 0.90766 0.83549 0.74279 1.90673 1.70964 1.33035 1.50290 1.46059 1.06582 1.08540 1.75718 1.19759 0.79906 0.95525 0.96476 0.90903 1.21828 1.02145 0.96063 0.94563 1.21551 1.00977 0.97794 0.95105 1.22304 0.98924 0.84701 0.94231 1.86543 1.82176 1.37395 1.34984 1.19806 0.97307 0.93902 0.98796 1.21151 1.00297 0.91980 1.00384 1.21448 0.96903 0.98539 0.97019 1.21531 0.95906 0.98838 0.97954 1.21413 1.00587 0.92252 0.99837 1.21200 0.96501 0.99386 0.96953 0.92363 0.97466 0.97430 0.88185 0.88223 0.75060 0.89108 0.89949 0.93765 0.93604 0.92454 0.91736 0.75545 0.84880 0.83875 0.83902 0.84131 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.01 13.96 21.45 0.30 -59.71 16 2 C 0.02 0.92 5.47 84.65 0.46 1.39 16 3 Si 0.94 48.28 27.47 68.60 1.88 50.16 16 4 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -13.82 6.54 99.48 0.65 -13.17 16 7 C -0.53 -31.21 9.66 25.60 0.25 -30.96 16 8 H 0.05 3.14 7.99 -2.91 -0.02 3.12 16 9 C 0.01 0.40 3.33 29.85 0.10 0.50 16 10 C -0.12 -4.60 5.64 29.85 0.17 -4.43 16 11 C 0.52 18.52 6.40 87.66 0.56 19.08 16 12 O -0.57 -25.15 13.12 -3.03 -0.04 -25.19 16 13 N -0.71 -18.26 4.98 -446.11 -2.22 -20.48 16 14 C 0.19 4.30 2.46 44.24 0.11 4.41 16 15 H 0.07 2.03 7.44 -2.39 -0.02 2.01 16 16 C -0.11 -2.21 4.87 30.59 0.15 -2.06 16 17 C -0.12 -3.34 4.19 30.59 0.13 -3.21 16 18 C 0.08 1.73 7.05 71.98 0.51 2.24 16 19 O -0.60 -16.65 13.66 -148.98 -2.04 -18.68 16 20 C -0.10 -1.80 4.95 -19.87 -0.10 -1.90 16 21 C -0.12 -1.85 9.05 22.27 0.20 -1.65 16 22 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 23 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 24 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 25 C -0.12 -2.09 9.67 22.27 0.22 -1.88 16 26 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 27 H 0.01 0.38 7.15 -2.39 -0.02 0.36 16 28 H 0.01 0.39 7.53 -2.39 -0.02 0.37 16 29 H 0.10 3.56 8.14 -2.38 -0.02 3.54 16 30 H 0.10 3.55 8.14 -2.39 -0.02 3.54 16 31 H 0.41 8.10 6.89 -92.71 -0.64 7.46 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.58 5.65 -2.39 -0.01 1.57 16 35 H 0.05 1.55 7.85 -2.39 -0.02 1.53 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.40 6.36 9.12 -74.06 -0.68 5.69 16 39 H 0.13 1.68 6.94 -2.91 -0.02 1.66 16 40 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.13 2.00 8.04 -2.91 -0.02 1.98 16 Total: -1.00 -79.48 352.72 0.95 -78.53 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.36 Total: 18.04 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 3.42 Total: -22.67 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.92 Total: -80.19 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -2.07 Total: -43.88 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.88 Total: 50.16 kcal Total: -79.48 0.95 -78.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291929236.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.625 kcal (2) G-P(sol) polarization free energy of solvation -79.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds