Wall clock time and date at job start Tue Mar 31 2020 07:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48504 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47036 * 300.00018 * 3 2 1 6 6 H 1.48497 * 109.47190 * 60.00090 * 3 2 1 7 7 C 1.37873 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00231 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47298 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47022 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00420 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99903 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00030 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.47414 * 35.00100 * 14 13 11 16 16 C 1.52996 * 109.47485 * 275.00143 * 14 13 11 17 17 C 1.52997 * 109.47131 * 64.99753 * 16 14 13 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 14 19 19 O 1.42895 * 109.47036 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47058 * 154.99924 * 14 13 11 21 21 C 1.38229 * 120.00218 * 39.72881 * 20 14 13 22 22 C 1.38232 * 120.00500 * 179.79087 * 21 20 14 23 23 C 1.38240 * 119.99413 * 0.43458 * 22 21 20 24 24 C 1.38236 * 120.00245 * 359.82145 * 23 22 21 25 25 C 1.38226 * 119.99739 * 359.96804 * 24 23 22 26 26 H 0.97004 * 119.99861 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46831 * 60.00447 * 9 7 2 28 28 H 1.08999 * 109.47647 * 300.00777 * 9 7 2 29 29 H 1.09002 * 109.47005 * 60.00321 * 10 9 7 30 30 H 1.08997 * 109.47386 * 300.00045 * 10 9 7 31 31 H 0.97001 * 119.99767 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.46993 * 304.99622 * 16 14 13 33 33 H 1.09004 * 109.47298 * 185.00036 * 16 14 13 34 34 H 1.09001 * 109.46832 * 60.00325 * 17 16 14 35 35 H 1.08993 * 109.47194 * 299.99846 * 17 16 14 36 36 H 1.09001 * 109.46801 * 300.00272 * 18 17 16 37 37 H 1.09001 * 109.46998 * 59.99868 * 18 17 16 38 38 H 0.96700 * 114.00205 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.99528 * 359.97438 * 21 20 14 40 40 H 1.08001 * 120.00721 * 180.27597 * 22 21 20 41 41 H 1.08004 * 119.99356 * 179.83351 * 23 22 21 42 42 H 1.07997 * 119.99543 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.99741 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9671 -0.0012 12 8 0.2787 -4.9672 -0.0011 13 7 2.1654 -6.1344 -0.0008 14 6 1.4329 -7.4031 -0.0008 15 1 0.5223 -7.2969 -0.5906 16 6 1.0684 -7.7817 1.4361 17 6 0.0912 -6.7500 2.0031 18 6 -0.2728 -7.1283 3.4403 19 8 -1.1851 -6.1645 3.9700 20 6 2.2971 -8.4821 -0.6008 21 6 3.6481 -8.5259 -0.3121 22 6 4.4401 -9.5182 -0.8590 23 6 3.8824 -10.4614 -1.7019 24 6 2.5323 -10.4144 -1.9949 25 6 1.7397 -9.4247 -1.4445 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8904 28 1 0.6245 -2.5571 0.8896 29 1 2.8717 -3.6044 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 3.1354 -6.1344 -0.0004 32 1 1.9711 -7.8011 2.0467 33 1 0.6024 -8.7670 1.4451 34 1 -0.8115 -6.7307 1.3924 35 1 0.5572 -5.7648 1.9941 36 1 -0.7387 -8.1137 3.4497 37 1 0.6300 -7.1475 4.0507 38 1 -1.4600 -6.3417 4.8800 39 1 4.0845 -7.7866 0.3433 40 1 5.4948 -9.5552 -0.6298 41 1 4.5017 -11.2350 -2.1313 42 1 2.0969 -11.1510 -2.6538 43 1 0.6848 -9.3883 -1.6732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291929238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:10 Heat of formation + Delta-G solvation = -83.698873 kcal Electronic energy + Delta-G solvation = -22905.565088 eV Core-core repulsion = 19528.779672 eV Total energy + Delta-G solvation = -3376.785416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.18943 -38.81275 -37.00876 -35.57007 -33.39941 -32.62188 -31.45121 -31.09534 -30.62524 -27.56649 -25.57505 -23.89251 -22.95333 -21.81291 -21.28950 -20.36952 -19.57488 -17.40824 -17.21925 -16.71648 -16.21290 -15.66780 -15.40265 -15.14709 -15.03696 -14.55745 -14.34100 -13.83349 -13.61929 -13.46365 -13.24732 -13.09459 -12.59787 -12.32263 -12.13393 -11.91133 -11.85575 -11.26797 -11.11196 -10.94106 -10.93316 -10.86742 -10.73723 -10.53791 -9.91098 -9.83990 -9.60376 -9.17759 -9.13809 -9.04483 -8.85101 -8.70269 -8.27664 -5.91524 -3.95738 1.10319 1.17792 3.30069 3.35446 3.41800 3.44702 3.47518 3.68080 4.18509 4.51305 4.59864 4.66407 4.77612 4.90247 5.04881 5.06184 5.24064 5.26696 5.33046 5.38154 5.43362 5.48365 5.65930 5.67568 5.76070 5.77261 5.89019 5.94074 6.22915 6.27015 6.28310 6.29220 6.33597 6.39766 6.64960 6.76332 6.81170 6.94605 7.73119 7.79677 7.92121 7.92654 8.12704 8.43785 8.83705 9.13234 9.67544 11.19368 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.003742 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.878560 B = 7480.889544 C = 8935.880223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.524 6.524 13 N -0.739 5.739 14 C 0.185 3.815 15 H 0.096 0.904 16 C -0.118 4.118 17 C -0.118 4.118 18 C 0.077 3.923 19 O -0.567 6.567 20 C -0.084 4.084 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.109 4.109 26 H 0.260 0.740 27 H 0.023 0.977 28 H 0.025 0.975 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.395 0.605 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.373 0.627 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.027 -23.675 1.839 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.399 6.399 13 N -0.394 5.394 14 C 0.080 3.920 15 H 0.114 0.886 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.001 4.001 19 O -0.372 6.372 20 C -0.085 4.085 21 C -0.131 4.131 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.136 4.136 25 C -0.127 4.127 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.219 0.781 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.044 -23.265 1.235 24.069 hybrid contribution 0.954 0.547 0.553 1.231 sum 6.998 -22.718 1.788 23.838 Atomic orbital electron populations 1.70016 1.06016 1.26391 1.50296 1.25024 0.94815 0.99184 0.95383 0.86553 0.79998 0.83951 0.77552 1.19786 1.21053 1.21042 1.21259 0.92918 0.91063 1.51193 0.92640 1.18893 0.93140 0.89295 0.98671 1.21870 1.00748 0.92067 1.02341 1.21517 0.88808 0.85519 0.74345 1.90696 1.14201 1.87460 1.47507 1.46366 1.09858 1.05049 1.78111 1.19734 0.94700 0.81743 0.95816 0.88644 1.21892 0.99497 0.98888 0.95375 1.21613 1.00200 1.00214 0.93521 1.22223 0.91534 0.90656 0.95662 1.86618 1.65536 1.52097 1.32919 1.20007 0.94348 0.96628 0.97507 1.20975 0.93312 0.98702 1.00152 1.21138 0.99815 0.95052 0.97529 1.21168 0.95298 0.99131 0.98592 1.21139 0.94046 0.98523 0.99888 1.21055 1.00199 0.94788 0.96676 0.93048 0.95844 0.95702 0.90391 0.90387 0.76994 0.91699 0.91310 0.90542 0.90028 0.94401 0.94321 0.78092 0.85960 0.85986 0.86187 0.85998 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.53 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 10 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 11 C 0.51 9.68 6.40 -10.98 -0.07 9.61 16 12 O -0.52 -11.98 13.12 5.56 0.07 -11.91 16 13 N -0.74 -10.33 4.98 -54.93 -0.27 -10.61 16 14 C 0.19 2.33 2.46 -69.09 -0.17 2.16 16 15 H 0.10 1.39 7.44 -51.93 -0.39 1.00 16 16 C -0.12 -1.38 4.87 -26.73 -0.13 -1.51 16 17 C -0.12 -1.79 4.19 -26.73 -0.11 -1.90 16 18 C 0.08 0.99 7.05 37.16 0.26 1.25 16 19 O -0.57 -8.41 13.66 -35.23 -0.48 -8.89 16 20 C -0.08 -0.90 4.96 -104.62 -0.52 -1.41 16 21 C -0.11 -1.07 9.06 -39.59 -0.36 -1.43 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 25 C -0.11 -1.07 9.67 -39.59 -0.38 -1.45 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.40 4.51 6.85 -40.82 -0.28 4.23 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.32 7.85 -51.93 -0.41 0.91 16 35 H 0.08 1.52 5.64 -51.93 -0.29 1.23 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.37 3.44 9.12 45.56 0.42 3.85 16 39 H 0.12 1.00 6.90 -52.48 -0.36 0.64 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 1.10 8.04 -52.49 -0.42 0.68 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -35.95 356.27 -8.88 -44.83 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -5.92 Total: 6.03 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -3.36 Total: -14.69 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.46 Total: -37.70 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.41 Total: -20.80 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.95 -8.88 -44.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291929238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.869 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds