Wall clock time and date at job start Tue Mar 31 2020 07:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48504 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47036 * 300.00018 * 3 2 1 6 6 H 1.48497 * 109.47190 * 60.00090 * 3 2 1 7 7 C 1.37873 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00231 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47298 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47022 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00420 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99903 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00030 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.47414 * 35.00100 * 14 13 11 16 16 C 1.52996 * 109.47485 * 275.00143 * 14 13 11 17 17 C 1.52997 * 109.47131 * 64.99753 * 16 14 13 18 18 C 1.53006 * 109.47127 * 180.02562 * 17 16 14 19 19 O 1.42895 * 109.47036 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47058 * 154.99924 * 14 13 11 21 21 C 1.38229 * 120.00218 * 39.72881 * 20 14 13 22 22 C 1.38232 * 120.00500 * 179.79087 * 21 20 14 23 23 C 1.38240 * 119.99413 * 0.43458 * 22 21 20 24 24 C 1.38236 * 120.00245 * 359.82145 * 23 22 21 25 25 C 1.38226 * 119.99739 * 359.96804 * 24 23 22 26 26 H 0.97004 * 119.99861 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46831 * 60.00447 * 9 7 2 28 28 H 1.08999 * 109.47647 * 300.00777 * 9 7 2 29 29 H 1.09002 * 109.47005 * 60.00321 * 10 9 7 30 30 H 1.08997 * 109.47386 * 300.00045 * 10 9 7 31 31 H 0.97001 * 119.99767 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.46993 * 304.99622 * 16 14 13 33 33 H 1.09004 * 109.47298 * 185.00036 * 16 14 13 34 34 H 1.09001 * 109.46832 * 60.00325 * 17 16 14 35 35 H 1.08993 * 109.47194 * 299.99846 * 17 16 14 36 36 H 1.09001 * 109.46801 * 300.00272 * 18 17 16 37 37 H 1.09001 * 109.46998 * 59.99868 * 18 17 16 38 38 H 0.96700 * 114.00205 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.99528 * 359.97438 * 21 20 14 40 40 H 1.08001 * 120.00721 * 180.27597 * 22 21 20 41 41 H 1.08004 * 119.99356 * 179.83351 * 23 22 21 42 42 H 1.07997 * 119.99543 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.99741 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9671 -0.0012 12 8 0.2787 -4.9672 -0.0011 13 7 2.1654 -6.1344 -0.0008 14 6 1.4329 -7.4031 -0.0008 15 1 0.5223 -7.2969 -0.5906 16 6 1.0684 -7.7817 1.4361 17 6 0.0912 -6.7500 2.0031 18 6 -0.2728 -7.1283 3.4403 19 8 -1.1851 -6.1645 3.9700 20 6 2.2971 -8.4821 -0.6008 21 6 3.6481 -8.5259 -0.3121 22 6 4.4401 -9.5182 -0.8590 23 6 3.8824 -10.4614 -1.7019 24 6 2.5323 -10.4144 -1.9949 25 6 1.7397 -9.4247 -1.4445 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5566 -0.8904 28 1 0.6245 -2.5571 0.8896 29 1 2.8717 -3.6044 0.8895 30 1 2.8718 -3.6044 -0.8905 31 1 3.1354 -6.1344 -0.0004 32 1 1.9711 -7.8011 2.0467 33 1 0.6024 -8.7670 1.4451 34 1 -0.8115 -6.7307 1.3924 35 1 0.5572 -5.7648 1.9941 36 1 -0.7387 -8.1137 3.4497 37 1 0.6300 -7.1475 4.0507 38 1 -1.4600 -6.3417 4.8800 39 1 4.0845 -7.7866 0.3433 40 1 5.4948 -9.5552 -0.6298 41 1 4.5017 -11.2350 -2.1313 42 1 2.0969 -11.1510 -2.6538 43 1 0.6848 -9.3883 -1.6732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291929238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:09 Heat of formation + Delta-G solvation = -109.718305 kcal Electronic energy + Delta-G solvation = -22906.693375 eV Core-core repulsion = 19528.779672 eV Total energy + Delta-G solvation = -3377.913703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.32161 -39.88265 -38.12658 -36.74309 -35.52403 -33.94377 -32.88460 -32.11958 -31.71430 -28.70600 -27.46420 -24.96758 -23.85438 -23.37577 -22.29407 -21.49570 -21.05540 -18.86994 -18.35250 -18.05256 -17.54505 -17.01243 -16.66737 -16.44637 -16.22988 -15.92482 -15.52904 -15.03137 -14.81433 -14.51637 -14.22000 -14.20645 -14.00535 -13.85177 -13.56879 -13.21000 -13.04803 -12.83703 -12.74449 -12.44940 -12.06049 -12.00000 -11.91969 -11.81946 -11.73496 -11.60240 -11.26906 -10.90287 -10.66937 -10.57648 -10.06221 -9.80320 -9.63891 -8.17549 -6.31880 0.39808 0.51604 1.41442 1.43381 1.56597 1.77714 2.26582 2.45124 2.88952 3.15264 3.25231 3.73435 3.91783 3.99726 4.02322 4.12115 4.18629 4.30665 4.33687 4.38238 4.50316 4.55138 4.58338 4.61778 4.63428 4.72442 4.81830 4.90379 5.05940 5.09554 5.16778 5.20381 5.41977 5.45827 5.51164 5.58525 5.64256 5.64804 5.73831 5.86413 6.11328 6.18268 6.63153 6.87081 6.92258 7.37816 7.40851 8.95336 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.003742 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.878560 B = 7480.889544 C = 8935.880223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.045 3.955 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.573 6.573 13 N -0.714 5.714 14 C 0.187 3.813 15 H 0.068 0.932 16 C -0.106 4.106 17 C -0.116 4.116 18 C 0.076 3.924 19 O -0.603 6.603 20 C -0.097 4.097 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.123 4.123 26 H 0.262 0.738 27 H -0.019 1.019 28 H -0.020 1.020 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.412 0.588 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.395 0.605 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.453 -25.311 2.079 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.094 0.906 9 C 0.007 3.993 10 C -0.160 4.160 11 C 0.300 3.700 12 O -0.452 6.452 13 N -0.369 5.369 14 C 0.083 3.917 15 H 0.086 0.914 16 C -0.144 4.144 17 C -0.154 4.154 18 C -0.001 4.001 19 O -0.412 6.412 20 C -0.098 4.098 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.142 4.142 26 H 0.071 0.929 27 H -0.001 1.001 28 H -0.002 1.002 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.250 0.750 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.245 0.755 39 H 0.152 0.848 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.528 -24.956 1.489 26.754 hybrid contribution -0.135 0.960 0.458 1.072 sum 9.394 -23.996 1.947 25.843 Atomic orbital electron populations 1.70200 1.08353 1.27697 1.51533 1.26162 0.95731 1.04018 0.94658 0.85260 0.79311 0.78022 0.77559 1.17527 1.20582 1.20623 1.21746 0.93963 0.91647 1.50659 0.90643 1.18652 0.93615 0.92471 0.94521 1.21635 0.99354 0.90512 1.04530 1.21189 0.88008 0.86522 0.74251 1.90691 1.16244 1.88137 1.50082 1.46050 1.10618 1.04284 1.75934 1.19745 0.94091 0.81450 0.96453 0.91394 1.21822 0.99435 0.98616 0.94575 1.21544 0.99265 0.99401 0.95212 1.22307 0.92406 0.91267 0.94108 1.86565 1.66200 1.53425 1.34984 1.19797 0.94744 0.96439 0.98806 1.21145 0.92711 0.99438 1.00462 1.21453 1.00905 0.94437 0.96975 1.21539 0.95314 0.99399 0.97923 1.21406 0.94405 0.98406 0.99833 1.21195 1.00646 0.95344 0.96985 0.92903 1.00073 1.00174 0.88059 0.88073 0.75026 0.89752 0.89070 0.93995 0.94054 0.91615 0.92262 0.75546 0.84800 0.83691 0.83781 0.84131 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.06 13.29 21.45 0.28 -60.78 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 4 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 8 H 0.08 4.02 7.74 -2.91 -0.02 3.99 16 9 C 0.05 2.59 4.26 29.85 0.13 2.72 16 10 C -0.12 -5.02 5.64 29.85 0.17 -4.85 16 11 C 0.51 20.24 6.40 87.66 0.56 20.80 16 12 O -0.57 -28.33 13.12 -3.04 -0.04 -28.37 16 13 N -0.71 -19.83 4.98 -446.10 -2.22 -22.05 16 14 C 0.19 4.71 2.46 44.25 0.11 4.82 16 15 H 0.07 2.11 7.44 -2.38 -0.02 2.09 16 16 C -0.11 -2.40 4.87 30.59 0.15 -2.25 16 17 C -0.12 -3.68 4.19 30.60 0.13 -3.55 16 18 C 0.08 1.92 7.05 71.98 0.51 2.43 16 19 O -0.60 -18.29 13.66 -148.98 -2.03 -20.33 16 20 C -0.10 -1.93 4.96 -19.87 -0.10 -2.03 16 21 C -0.12 -1.93 9.06 22.27 0.20 -1.73 16 22 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 23 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 24 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 25 C -0.12 -2.28 9.67 22.27 0.22 -2.07 16 26 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 27 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 28 H -0.02 -1.33 8.10 -2.39 -0.02 -1.34 16 29 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 30 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 31 H 0.41 8.66 6.85 -92.71 -0.64 8.03 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.04 1.57 7.85 -2.39 -0.02 1.55 16 35 H 0.04 1.63 5.64 -2.39 -0.01 1.61 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.40 7.23 9.12 -74.06 -0.68 6.55 16 39 H 0.13 1.76 6.90 -2.91 -0.02 1.74 16 40 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 43 H 0.12 2.19 8.04 -2.91 -0.02 2.17 16 Total: -1.00 -83.81 356.27 1.15 -82.66 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.30 Total: 23.14 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 3.43 Total: -21.58 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -1.94 Total: -82.83 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -2.07 Total: -48.70 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -83.81 1.15 -82.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291929238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.057 kcal (2) G-P(sol) polarization free energy of solvation -83.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds