Wall clock time and date at job start Tue Mar 31 2020 08:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00401 * 2 1 4 4 H 1.48497 * 109.47134 * 270.00450 * 3 2 1 5 5 H 1.48500 * 109.46821 * 30.00207 * 3 2 1 6 6 H 1.48501 * 109.47274 * 150.00215 * 3 2 1 7 7 C 1.37881 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99601 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46632 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99931 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00172 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99734 * 359.97438 * 13 11 10 15 15 C 1.53005 * 109.47051 * 269.99938 * 14 13 11 16 16 C 1.53005 * 109.46843 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47046 * 180.02562 * 16 15 14 18 18 C 1.46497 * 120.00021 * 180.02562 * 13 11 10 19 19 C 1.50707 * 109.47012 * 269.99478 * 18 13 11 20 20 C 1.38238 * 119.99792 * 90.00154 * 19 18 13 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.98090 * 19 18 13 25 25 H 0.96999 * 119.99622 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47258 * 60.00076 * 9 7 2 27 27 H 1.08998 * 109.46915 * 299.99115 * 9 7 2 28 28 H 1.08999 * 109.47451 * 60.00029 * 10 9 7 29 29 H 1.09003 * 109.47218 * 300.00039 * 10 9 7 30 30 H 1.08997 * 109.47515 * 30.00540 * 14 13 11 31 31 H 1.09004 * 109.47153 * 150.00388 * 14 13 11 32 32 H 1.08996 * 109.47102 * 299.99945 * 15 14 13 33 33 H 1.09001 * 109.46911 * 60.00972 * 15 14 13 34 34 H 1.08998 * 109.46947 * 300.00306 * 16 15 14 35 35 H 1.08997 * 109.47063 * 60.00272 * 16 15 14 36 36 H 0.96693 * 113.99728 * 180.02562 * 17 16 15 37 37 H 1.09005 * 109.47643 * 149.99939 * 18 13 11 38 38 H 1.09000 * 109.47513 * 29.99103 * 18 13 11 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 6 1.4916 -4.9672 -0.0033 12 8 0.2787 -4.9671 -0.0033 13 7 2.1654 -6.1344 -0.0037 14 6 3.6303 -6.1345 -0.0042 15 6 4.1399 -6.1342 -1.4469 16 6 5.6699 -6.1349 -1.4474 17 8 6.1458 -6.1341 -2.7948 18 6 1.4328 -7.4031 -0.0048 19 6 1.1811 -7.8390 1.4157 20 6 0.0289 -7.4403 2.0672 21 6 -0.2022 -7.8406 3.3700 22 6 0.7186 -8.6401 4.0211 23 6 1.8733 -9.0344 3.3715 24 6 2.1022 -8.6379 2.0671 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 2.8718 -3.6052 0.8873 29 1 2.8718 -3.6036 -0.8927 30 1 3.9939 -5.2447 0.5097 31 1 3.9939 -7.0246 0.5093 32 1 3.7763 -7.0241 -1.9607 33 1 3.7765 -5.2441 -1.9604 34 1 6.0337 -5.2453 -0.9333 35 1 6.0330 -7.0252 -0.9340 36 1 7.1097 -6.1349 -2.8714 37 1 2.0220 -8.1626 -0.5188 38 1 0.4806 -7.2724 -0.5188 39 1 -0.6907 -6.8161 1.5583 40 1 -1.1022 -7.5288 3.8791 41 1 0.5377 -8.9531 5.0388 42 1 2.5948 -9.6553 3.8816 43 1 3.0020 -8.9500 1.5579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291945669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:08 Heat of formation + Delta-G solvation = -77.405571 kcal Electronic energy + Delta-G solvation = -23063.683139 eV Core-core repulsion = 19687.170621 eV Total energy + Delta-G solvation = -3376.512518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.96847 -38.71348 -37.26959 -35.63690 -33.57779 -32.67270 -31.08426 -30.87436 -30.55272 -26.91019 -25.71535 -24.67593 -22.56371 -21.96886 -21.74329 -20.78363 -18.62401 -17.45856 -17.08008 -16.65889 -16.14131 -15.76528 -15.46147 -15.34802 -14.88547 -14.62968 -14.39801 -13.89803 -13.45081 -13.38409 -13.13047 -12.96178 -12.60237 -12.50628 -12.14857 -12.02861 -11.84596 -11.32101 -11.26766 -11.15863 -10.99977 -10.93868 -10.89756 -10.57405 -10.13007 -9.90211 -9.61680 -9.23320 -9.07312 -8.90075 -8.69112 -8.48270 -8.30024 -5.94557 -3.98715 1.29567 1.42545 3.19257 3.22886 3.34263 3.40343 3.42783 3.89036 4.14649 4.48427 4.72325 4.81145 4.81475 4.98456 5.01600 5.07354 5.14431 5.21580 5.24216 5.40492 5.44537 5.48174 5.50725 5.51018 5.68140 5.79314 5.93023 6.00292 6.08581 6.13079 6.23206 6.27552 6.43742 6.54259 6.65238 6.74452 6.90967 7.01900 7.45478 7.72209 7.76006 7.88143 8.08705 8.40141 8.74454 9.09509 9.64675 11.16431 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010925 B = 0.004549 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.412589 B = 6153.586864 C = 8086.775601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.129 4.129 11 C 0.514 3.486 12 O -0.528 6.528 13 N -0.618 5.618 14 C 0.117 3.883 15 C -0.142 4.142 16 C 0.079 3.921 17 O -0.574 6.574 18 C 0.153 3.847 19 C -0.102 4.102 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.111 4.111 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.378 0.622 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.833 -19.837 3.158 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.304 3.696 12 O -0.403 6.403 13 N -0.353 5.353 14 C -0.007 4.007 15 C -0.181 4.181 16 C 0.000 4.000 17 O -0.379 6.379 18 C 0.030 3.970 19 C -0.103 4.103 20 C -0.111 4.111 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.129 4.129 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.148 0.852 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.349 -19.688 3.024 21.598 hybrid contribution 1.182 0.885 0.251 1.498 sum 9.531 -18.803 3.275 21.334 Atomic orbital electron populations 1.69999 1.06042 1.26531 1.50254 1.25014 0.94807 0.99168 0.95322 0.86608 0.79779 0.83596 0.78073 1.20663 1.21230 1.19913 1.21210 0.92874 0.91013 1.51311 0.92683 1.18898 0.93158 0.89375 0.98545 1.21913 1.00728 0.91990 1.02204 1.21591 0.88461 0.85458 0.74046 1.90640 1.14324 1.87159 1.48184 1.48141 1.05952 1.05578 1.75600 1.21370 0.80253 1.03430 0.95669 1.21996 0.93852 1.04243 0.97991 1.22083 0.94803 0.99797 0.83280 1.86499 1.26629 1.97734 1.27061 1.20273 0.98646 0.85690 0.92349 1.20312 0.94926 0.97779 0.97278 1.21318 0.97273 0.97820 0.94707 1.21209 0.99600 0.98162 0.95076 1.21140 0.94621 0.98503 0.99704 1.21068 0.97632 1.00864 0.95035 1.21002 0.98624 0.98344 0.94947 0.92982 0.95856 0.95884 0.90420 0.90263 0.89582 0.90746 0.91119 0.90196 0.93143 0.93788 0.77516 0.90261 0.89099 0.85154 0.86118 0.86400 0.86381 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.91 16 10 C -0.13 -2.66 4.19 -27.88 -0.12 -2.77 16 11 C 0.51 10.00 7.67 -10.99 -0.08 9.91 16 12 O -0.53 -12.21 15.09 5.55 0.08 -12.12 16 13 N -0.62 -9.00 2.46 -175.06 -0.43 -9.43 16 14 C 0.12 1.30 5.21 -4.04 -0.02 1.28 16 15 C -0.14 -1.58 5.91 -26.73 -0.16 -1.73 16 16 C 0.08 0.72 7.05 37.16 0.26 0.98 16 17 O -0.57 -5.95 13.66 -35.23 -0.48 -6.43 16 18 C 0.15 1.98 5.53 -5.19 -0.03 1.95 16 19 C -0.10 -1.32 5.46 -104.62 -0.57 -1.89 16 20 C -0.09 -1.33 9.70 -39.58 -0.38 -1.71 16 21 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 22 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 24 C -0.11 -1.21 9.70 -39.58 -0.38 -1.59 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.48 7.40 -51.93 -0.38 1.10 16 29 H 0.08 1.52 7.19 -51.93 -0.37 1.15 16 30 H 0.09 0.98 6.44 -51.93 -0.33 0.64 16 31 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.08 7.22 -51.93 -0.38 0.71 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.38 2.08 9.12 45.56 0.42 2.50 16 37 H 0.08 0.80 8.02 -51.93 -0.42 0.38 16 38 H 0.09 1.32 7.36 -51.93 -0.38 0.94 16 39 H 0.13 2.09 7.58 -52.48 -0.40 1.69 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -35.42 362.06 -8.87 -44.30 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.01 Total: 2.08 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -3.21 Total: -13.78 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.31 Total: -36.26 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.40 Total: -18.55 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.42 -8.87 -44.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291945669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.109 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds