Wall clock time and date at job start Tue Mar 31 2020 08:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00401 * 2 1 4 4 H 1.48497 * 109.47134 * 270.00450 * 3 2 1 5 5 H 1.48500 * 109.46821 * 30.00207 * 3 2 1 6 6 H 1.48501 * 109.47274 * 150.00215 * 3 2 1 7 7 C 1.37881 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99601 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46632 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99931 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00172 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99734 * 359.97438 * 13 11 10 15 15 C 1.53005 * 109.47051 * 269.99938 * 14 13 11 16 16 C 1.53005 * 109.46843 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47046 * 180.02562 * 16 15 14 18 18 C 1.46497 * 120.00021 * 180.02562 * 13 11 10 19 19 C 1.50707 * 109.47012 * 269.99478 * 18 13 11 20 20 C 1.38238 * 119.99792 * 90.00154 * 19 18 13 21 21 C 1.38235 * 119.99712 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00220 * 359.97124 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.28719 * 22 21 20 24 24 C 1.38234 * 120.00179 * 269.98090 * 19 18 13 25 25 H 0.96999 * 119.99622 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47258 * 60.00076 * 9 7 2 27 27 H 1.08998 * 109.46915 * 299.99115 * 9 7 2 28 28 H 1.08999 * 109.47451 * 60.00029 * 10 9 7 29 29 H 1.09003 * 109.47218 * 300.00039 * 10 9 7 30 30 H 1.08997 * 109.47515 * 30.00540 * 14 13 11 31 31 H 1.09004 * 109.47153 * 150.00388 * 14 13 11 32 32 H 1.08996 * 109.47102 * 299.99945 * 15 14 13 33 33 H 1.09001 * 109.46911 * 60.00972 * 15 14 13 34 34 H 1.08998 * 109.46947 * 300.00306 * 16 15 14 35 35 H 1.08997 * 109.47063 * 60.00272 * 16 15 14 36 36 H 0.96693 * 113.99728 * 180.02562 * 17 16 15 37 37 H 1.09005 * 109.47643 * 149.99939 * 18 13 11 38 38 H 1.09000 * 109.47513 * 29.99103 * 18 13 11 39 39 H 1.08005 * 120.00068 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.99770 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.99744 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 43 43 H 1.07999 * 119.99968 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 6 1.4916 -4.9672 -0.0033 12 8 0.2787 -4.9671 -0.0033 13 7 2.1654 -6.1344 -0.0037 14 6 3.6303 -6.1345 -0.0042 15 6 4.1399 -6.1342 -1.4469 16 6 5.6699 -6.1349 -1.4474 17 8 6.1458 -6.1341 -2.7948 18 6 1.4328 -7.4031 -0.0048 19 6 1.1811 -7.8390 1.4157 20 6 0.0289 -7.4403 2.0672 21 6 -0.2022 -7.8406 3.3700 22 6 0.7186 -8.6401 4.0211 23 6 1.8733 -9.0344 3.3715 24 6 2.1022 -8.6379 2.0671 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 2.8718 -3.6052 0.8873 29 1 2.8718 -3.6036 -0.8927 30 1 3.9939 -5.2447 0.5097 31 1 3.9939 -7.0246 0.5093 32 1 3.7763 -7.0241 -1.9607 33 1 3.7765 -5.2441 -1.9604 34 1 6.0337 -5.2453 -0.9333 35 1 6.0330 -7.0252 -0.9340 36 1 7.1097 -6.1349 -2.8714 37 1 2.0220 -8.1626 -0.5188 38 1 0.4806 -7.2724 -0.5188 39 1 -0.6907 -6.8161 1.5583 40 1 -1.1022 -7.5288 3.8791 41 1 0.5377 -8.9531 5.0388 42 1 2.5948 -9.6553 3.8816 43 1 3.0020 -8.9500 1.5579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291945669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:05 Heat of formation + Delta-G solvation = -101.445576 kcal Electronic energy + Delta-G solvation = -23064.725592 eV Core-core repulsion = 19687.170621 eV Total energy + Delta-G solvation = -3377.554971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.23767 -39.79583 -38.11031 -36.82176 -35.63077 -33.80916 -32.80057 -31.80683 -31.71077 -28.40765 -27.01335 -26.02087 -23.61953 -23.45322 -22.60286 -22.08357 -19.97966 -18.86459 -18.19890 -17.82839 -17.46993 -17.17063 -16.57703 -16.44876 -16.24746 -15.91659 -15.84039 -15.07448 -14.64748 -14.34343 -14.26215 -14.14591 -13.99560 -13.80391 -13.44605 -13.35323 -13.21354 -12.88233 -12.82050 -12.47316 -12.19890 -12.13082 -11.97840 -11.86042 -11.81675 -11.56803 -11.31315 -10.78117 -10.74419 -10.57752 -9.81094 -9.79549 -9.62498 -8.18865 -6.33205 0.37040 0.50979 1.40800 1.43967 1.54726 1.68034 2.06000 2.42243 2.95794 3.14065 3.39259 3.73830 3.87936 3.95705 4.00730 4.16645 4.28673 4.31011 4.32199 4.37456 4.46863 4.47537 4.52924 4.59090 4.68178 4.70289 4.77989 4.79607 4.98951 5.09986 5.10824 5.17118 5.32238 5.46166 5.56326 5.59825 5.61844 5.62782 5.71909 5.83381 6.13034 6.16189 6.37380 6.84677 6.99624 7.26457 7.37151 8.93940 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010925 B = 0.004549 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.412589 B = 6153.586864 C = 8086.775601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.045 3.955 10 C -0.115 4.115 11 C 0.510 3.490 12 O -0.580 6.580 13 N -0.604 5.604 14 C 0.112 3.888 15 C -0.139 4.139 16 C 0.080 3.920 17 O -0.601 6.601 18 C 0.153 3.847 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.139 4.139 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.104 4.104 25 H 0.263 0.737 26 H -0.020 1.020 27 H -0.020 1.020 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.398 0.602 37 H 0.120 0.880 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.142 -21.502 4.203 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.008 3.992 10 C -0.155 4.155 11 C 0.300 3.700 12 O -0.460 6.460 13 N -0.336 5.336 14 C -0.010 4.010 15 C -0.177 4.177 16 C 0.002 3.998 17 O -0.409 6.409 18 C 0.031 3.969 19 C -0.116 4.116 20 C -0.144 4.144 21 C -0.157 4.157 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.122 4.122 25 H 0.071 0.929 26 H -0.002 1.002 27 H -0.001 1.001 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.248 0.752 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.734 -21.401 4.066 25.233 hybrid contribution -0.166 1.300 -0.063 1.312 sum 12.568 -20.102 4.003 24.043 Atomic orbital electron populations 1.70185 1.08355 1.27794 1.51443 1.26139 0.95707 1.03939 0.94555 0.85325 0.78734 0.77672 0.78551 1.19712 1.21101 1.17761 1.21684 0.93908 0.91548 1.50862 0.90697 1.18663 0.93602 0.92517 0.94447 1.21642 0.99270 0.90541 1.04017 1.21349 0.87732 0.86713 0.74186 1.90630 1.16441 1.87990 1.50914 1.48052 1.07627 1.04602 1.73302 1.21678 0.77511 1.05488 0.96311 1.21921 0.95780 1.02726 0.97307 1.22098 0.92977 1.01567 0.83147 1.86440 1.28746 1.97855 1.27897 1.20411 0.98039 0.85437 0.93004 1.20316 0.95168 0.98939 0.97130 1.21240 0.98060 0.99155 0.95949 1.21357 1.00670 0.99085 0.94600 1.21490 0.94322 0.97390 1.00815 1.21530 0.97638 1.00129 0.94842 1.21345 0.98853 0.96832 0.95219 0.92866 1.00203 1.00132 0.88247 0.88507 0.89462 0.86723 0.90984 0.93474 0.92598 0.90688 0.75201 0.86229 0.91957 0.88863 0.85891 0.83844 0.82857 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.59 13.29 21.45 0.28 -60.30 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.11 16 3 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.07 3.97 7.74 -2.91 -0.02 3.94 16 9 C 0.05 2.61 4.26 29.85 0.13 2.74 16 10 C -0.12 -4.88 4.19 29.85 0.13 -4.75 16 11 C 0.51 20.78 7.67 87.66 0.67 21.45 16 12 O -0.58 -29.32 15.09 -3.05 -0.05 -29.37 16 13 N -0.60 -17.25 2.46 -826.14 -2.03 -19.28 16 14 C 0.11 2.16 5.21 86.38 0.45 2.61 16 15 C -0.14 -2.75 5.91 30.60 0.18 -2.57 16 16 C 0.08 1.19 7.05 71.98 0.51 1.69 16 17 O -0.60 -10.88 13.66 -148.98 -2.04 -12.92 16 18 C 0.15 3.88 5.53 85.64 0.47 4.35 16 19 C -0.11 -2.89 5.46 -19.86 -0.11 -3.00 16 20 C -0.13 -3.83 9.70 22.27 0.22 -3.62 16 21 C -0.14 -3.58 10.05 22.27 0.22 -3.36 16 22 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 23 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 24 C -0.10 -1.89 9.70 22.27 0.22 -1.67 16 25 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 26 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 27 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 28 H 0.10 3.74 7.40 -2.39 -0.02 3.73 16 29 H 0.10 3.73 7.19 -2.39 -0.02 3.72 16 30 H 0.09 1.71 6.44 -2.39 -0.02 1.70 16 31 H 0.11 1.37 8.07 -2.38 -0.02 1.35 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.24 7.22 -2.39 -0.02 1.23 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.40 3.27 9.12 -74.06 -0.68 2.59 16 37 H 0.12 2.05 8.02 -2.38 -0.02 2.03 16 38 H 0.06 1.94 7.36 -2.39 -0.02 1.92 16 39 H 0.09 3.46 7.58 -2.91 -0.02 3.43 16 40 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 42 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -83.90 362.06 2.74 -81.15 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.32 Total: 15.14 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 4.23 Total: -21.36 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -1.74 Total: -79.58 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -2.08 Total: -42.28 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -83.90 2.74 -81.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291945669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.293 kcal (2) G-P(sol) polarization free energy of solvation -83.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds