Wall clock time and date at job start Tue Mar 31 2020 08:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99687 * 2 1 4 4 H 1.48497 * 109.46722 * 239.99701 * 3 2 1 5 5 H 1.48493 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47182 * 119.99934 * 3 2 1 7 7 C 1.37873 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00336 * 359.72781 * 7 2 1 10 10 C 1.53002 * 109.47435 * 180.27416 * 9 7 2 11 11 C 1.50696 * 109.47435 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99644 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00312 * 180.02562 * 11 10 9 14 14 C 1.43436 * 120.53282 * 354.19479 * 13 11 10 15 15 C 1.54404 * 116.39224 * 271.73357 * 14 13 11 16 16 C 1.54843 * 110.07280 * 318.65345 * 15 14 13 17 17 C 1.50127 * 110.81252 * 321.07669 * 16 15 14 18 18 C 1.52522 * 105.41860 * 97.68235 * 17 16 15 19 19 C 1.46236 * 114.27588 * 270.59045 * 18 17 16 20 20 H 1.08994 * 109.90445 * 298.86574 * 19 18 17 21 21 C 1.50703 * 109.84345 * 177.91304 * 19 18 17 22 22 C 1.34513 * 125.78675 * 156.97244 * 21 19 18 23 23 C 1.41383 * 106.84043 * 179.97438 * 22 21 19 24 24 C 1.34510 * 106.84066 * 359.97438 * 23 22 21 25 25 O 1.34297 * 125.78987 * 336.66325 * 21 19 18 26 26 H 0.96999 * 120.00341 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47141 * 300.27360 * 9 7 2 28 28 H 1.09000 * 109.47181 * 60.27311 * 9 7 2 29 29 H 1.08995 * 109.47067 * 300.00368 * 10 9 7 30 30 H 1.09008 * 109.46876 * 60.00073 * 10 9 7 31 31 H 1.09000 * 108.16003 * 33.31243 * 14 13 11 32 32 H 1.09003 * 108.15955 * 149.87630 * 14 13 11 33 33 H 1.09000 * 109.44236 * 198.43632 * 15 14 13 34 34 H 1.08996 * 109.23600 * 78.73883 * 15 14 13 35 35 H 1.08995 * 109.20729 * 200.72790 * 16 15 14 36 36 H 1.09001 * 109.20780 * 81.41366 * 16 15 14 37 37 H 1.09003 * 110.25066 * 338.70229 * 17 16 15 38 38 H 1.09009 * 110.24512 * 216.65363 * 17 16 15 39 39 H 1.09000 * 108.52455 * 149.34307 * 18 17 16 40 40 H 1.09008 * 108.39756 * 31.74102 * 18 17 16 41 41 H 1.07997 * 126.58380 * 359.96547 * 22 21 19 42 42 H 1.08002 * 126.57906 * 179.97438 * 23 22 21 43 43 H 1.08005 * 125.78959 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0073 10 6 2.2453 -3.6620 0.0134 11 6 1.4919 -4.9671 0.0208 12 8 0.2791 -4.9671 0.0217 13 7 2.1658 -6.1342 0.0276 14 6 3.5946 -6.1515 -0.0972 15 6 4.1576 -6.1957 -1.5342 16 6 3.3255 -7.1722 -2.4012 17 6 2.9365 -8.3881 -1.6111 18 6 1.5135 -8.1215 -1.1310 19 6 1.4325 -7.4381 0.1593 20 1 1.8989 -8.0485 0.9325 21 6 -0.0099 -7.1804 0.5120 22 6 -0.4939 -6.9862 1.7519 23 6 -1.8867 -6.7821 1.6206 24 6 -2.1705 -6.8631 0.3083 25 8 -1.0291 -7.0999 -0.3589 26 1 -0.4850 0.8400 -0.0004 27 1 0.6244 -2.5523 0.8976 28 1 0.6244 -2.5615 -0.8824 29 1 2.8720 -3.6089 -0.8768 30 1 2.8720 -3.5996 0.9032 31 1 3.9889 -5.2594 0.3896 32 1 3.9722 -7.0207 0.4414 33 1 5.1947 -6.5302 -1.5075 34 1 4.1112 -5.1973 -1.9690 35 1 3.9169 -7.4791 -3.2637 36 1 2.4243 -6.6659 -2.7470 37 1 3.6047 -8.5141 -0.7592 38 1 2.9608 -9.2740 -2.2457 39 1 0.9906 -9.0746 -1.0515 40 1 1.0068 -7.5111 -1.8786 41 1 0.0726 -6.9864 2.6714 42 1 -2.5883 -6.5966 2.4205 43 1 -3.1495 -6.7526 -0.1343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292116778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:01 Heat of formation + Delta-G solvation = -19.385886 kcal Electronic energy + Delta-G solvation = -24501.395791 eV Core-core repulsion = 21127.399195 eV Total energy + Delta-G solvation = -3373.996596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.19945 -39.99845 -37.45069 -33.91202 -33.63084 -33.12482 -32.41436 -30.74768 -29.00416 -26.84001 -25.62079 -24.91756 -22.69582 -21.49053 -20.95560 -20.40885 -19.94881 -18.31637 -17.34142 -16.46252 -16.34607 -15.87023 -15.28931 -15.02973 -14.78947 -14.47713 -14.36302 -14.02842 -13.68160 -13.33733 -12.70847 -12.53439 -12.42308 -12.35129 -12.13646 -12.10538 -11.83509 -11.49265 -11.24147 -11.07910 -10.90860 -10.71227 -10.61839 -10.56680 -10.48141 -9.90707 -9.68453 -9.45034 -9.18610 -9.04851 -8.42835 -8.29322 -7.65364 -5.94002 -3.98471 2.12323 2.98660 3.24706 3.35113 3.38610 3.39735 3.41179 3.47641 4.43798 4.48565 4.74761 4.79847 4.96949 5.00048 5.07760 5.20201 5.33287 5.40715 5.42466 5.48749 5.54578 5.63735 5.68060 5.74218 5.83201 5.99275 6.05176 6.10656 6.20026 6.23168 6.24951 6.27309 6.31010 6.33692 6.53049 6.70240 6.91431 6.96671 7.60375 7.75977 7.83063 7.89372 8.09708 8.40903 8.78754 9.09940 9.64838 11.16855 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.005181 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.214929 B = 5403.551414 C = 6794.544986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.125 4.125 11 C 0.509 3.491 12 O -0.502 6.502 13 N -0.618 5.618 14 C 0.112 3.888 15 C -0.139 4.139 16 C -0.121 4.121 17 C -0.114 4.114 18 C -0.142 4.142 19 C 0.233 3.767 20 H 0.101 0.899 21 C 0.027 3.973 22 C -0.212 4.212 23 C -0.206 4.206 24 C -0.039 4.039 25 O -0.163 6.163 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -19.591 -0.616 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.164 4.164 11 C 0.299 3.701 12 O -0.376 6.376 13 N -0.355 5.355 14 C -0.012 4.012 15 C -0.178 4.178 16 C -0.158 4.158 17 C -0.151 4.151 18 C -0.180 4.180 19 C 0.132 3.868 20 H 0.118 0.882 21 C -0.024 4.024 22 C -0.232 4.232 23 C -0.226 4.226 24 C -0.107 4.107 25 O -0.058 6.058 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.871 -19.465 -0.923 20.086 hybrid contribution 0.409 1.185 0.207 1.270 sum 5.280 -18.280 -0.715 19.041 Atomic orbital electron populations 1.69991 1.06050 1.26630 1.50147 1.25013 0.94799 0.99153 0.95323 0.86668 0.79566 0.83269 0.78528 1.20266 1.21286 1.20257 1.21176 0.92827 0.91053 1.51446 0.92751 1.18872 0.93111 0.89334 0.98462 1.21879 1.00612 0.91852 1.02103 1.21630 0.88643 0.85351 0.74478 1.90680 1.14109 1.85466 1.47336 1.48471 1.06782 1.05001 1.75265 1.20914 0.80663 1.03090 0.96572 1.22630 0.99008 1.00375 0.95837 1.21562 1.00521 0.95752 0.98015 1.21026 0.95811 0.98008 1.00252 1.20904 0.98123 1.00979 0.98010 1.18698 0.84950 0.85053 0.98074 0.88158 1.21406 0.88903 1.04098 0.87966 1.21215 0.95094 1.09688 0.97191 1.21568 0.96054 1.08179 0.96763 1.23688 0.89221 1.06176 0.91636 1.83910 1.15376 1.69438 1.37102 0.92938 0.95936 0.96004 0.90478 0.90437 0.90400 0.91499 0.90840 0.91305 0.92528 0.91712 0.91116 0.91435 0.91402 0.90588 0.84741 0.84358 0.78993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.09 4.26 -27.88 -0.12 0.97 16 10 C -0.12 -2.60 4.13 -27.88 -0.12 -2.71 16 11 C 0.51 10.01 7.56 -10.99 -0.08 9.93 16 12 O -0.50 -11.75 11.92 -15.89 -0.19 -11.94 16 13 N -0.62 -9.06 2.58 -169.64 -0.44 -9.50 16 14 C 0.11 1.26 4.68 -4.93 -0.02 1.24 16 15 C -0.14 -1.42 6.40 -25.02 -0.16 -1.58 16 16 C -0.12 -1.24 5.65 -27.19 -0.15 -1.40 16 17 C -0.11 -1.03 5.76 -28.40 -0.16 -1.19 16 18 C -0.14 -1.63 4.21 -30.19 -0.13 -1.76 16 19 C 0.23 3.08 2.96 -70.24 -0.21 2.87 16 20 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 21 C 0.03 0.45 3.64 -35.62 -0.13 0.32 16 22 C -0.21 -3.50 10.19 -39.70 -0.40 -3.90 16 23 C -0.21 -3.32 10.91 -39.70 -0.43 -3.76 16 24 C -0.04 -0.62 11.98 29.41 0.35 -0.27 16 25 O -0.16 -2.87 9.20 -15.74 -0.14 -3.02 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.25 16 28 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 29 H 0.08 1.49 7.64 -51.93 -0.40 1.09 16 30 H 0.08 1.49 7.58 -51.92 -0.39 1.10 16 31 H 0.08 0.90 6.45 -51.93 -0.34 0.56 16 32 H 0.07 0.58 6.89 -51.93 -0.36 0.23 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.83 6.82 -51.93 -0.35 0.48 16 37 H 0.07 0.56 6.28 -51.93 -0.33 0.23 16 38 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.08 6.66 -51.92 -0.35 0.74 16 41 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 42 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.19 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -34.78 337.90 -8.82 -43.60 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.67 Total: 0.97 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.18 Total: -15.04 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.30 Total: -36.52 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.33 Total: -14.95 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.78 -8.82 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292116778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.213 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds