Wall clock time and date at job start Tue Mar 31 2020 08:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99687 * 2 1 4 4 H 1.48497 * 109.46722 * 239.99701 * 3 2 1 5 5 H 1.48493 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47182 * 119.99934 * 3 2 1 7 7 C 1.37873 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99587 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00336 * 359.72781 * 7 2 1 10 10 C 1.53002 * 109.47435 * 180.27416 * 9 7 2 11 11 C 1.50696 * 109.47435 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99644 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00312 * 180.02562 * 11 10 9 14 14 C 1.43436 * 120.53282 * 354.19479 * 13 11 10 15 15 C 1.54404 * 116.39224 * 271.73357 * 14 13 11 16 16 C 1.54843 * 110.07280 * 318.65345 * 15 14 13 17 17 C 1.50127 * 110.81252 * 321.07669 * 16 15 14 18 18 C 1.52522 * 105.41860 * 97.68235 * 17 16 15 19 19 C 1.46236 * 114.27588 * 270.59045 * 18 17 16 20 20 H 1.08994 * 109.90445 * 298.86574 * 19 18 17 21 21 C 1.50703 * 109.84345 * 177.91304 * 19 18 17 22 22 C 1.34513 * 125.78675 * 156.97244 * 21 19 18 23 23 C 1.41383 * 106.84043 * 179.97438 * 22 21 19 24 24 C 1.34510 * 106.84066 * 359.97438 * 23 22 21 25 25 O 1.34297 * 125.78987 * 336.66325 * 21 19 18 26 26 H 0.96999 * 120.00341 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47141 * 300.27360 * 9 7 2 28 28 H 1.09000 * 109.47181 * 60.27311 * 9 7 2 29 29 H 1.08995 * 109.47067 * 300.00368 * 10 9 7 30 30 H 1.09008 * 109.46876 * 60.00073 * 10 9 7 31 31 H 1.09000 * 108.16003 * 33.31243 * 14 13 11 32 32 H 1.09003 * 108.15955 * 149.87630 * 14 13 11 33 33 H 1.09000 * 109.44236 * 198.43632 * 15 14 13 34 34 H 1.08996 * 109.23600 * 78.73883 * 15 14 13 35 35 H 1.08995 * 109.20729 * 200.72790 * 16 15 14 36 36 H 1.09001 * 109.20780 * 81.41366 * 16 15 14 37 37 H 1.09003 * 110.25066 * 338.70229 * 17 16 15 38 38 H 1.09009 * 110.24512 * 216.65363 * 17 16 15 39 39 H 1.09000 * 108.52455 * 149.34307 * 18 17 16 40 40 H 1.09008 * 108.39756 * 31.74102 * 18 17 16 41 41 H 1.07997 * 126.58380 * 359.96547 * 22 21 19 42 42 H 1.08002 * 126.57906 * 179.97438 * 23 22 21 43 43 H 1.08005 * 125.78959 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0073 10 6 2.2453 -3.6620 0.0134 11 6 1.4919 -4.9671 0.0208 12 8 0.2791 -4.9671 0.0217 13 7 2.1658 -6.1342 0.0276 14 6 3.5946 -6.1515 -0.0972 15 6 4.1576 -6.1957 -1.5342 16 6 3.3255 -7.1722 -2.4012 17 6 2.9365 -8.3881 -1.6111 18 6 1.5135 -8.1215 -1.1310 19 6 1.4325 -7.4381 0.1593 20 1 1.8989 -8.0485 0.9325 21 6 -0.0099 -7.1804 0.5120 22 6 -0.4939 -6.9862 1.7519 23 6 -1.8867 -6.7821 1.6206 24 6 -2.1705 -6.8631 0.3083 25 8 -1.0291 -7.0999 -0.3589 26 1 -0.4850 0.8400 -0.0004 27 1 0.6244 -2.5523 0.8976 28 1 0.6244 -2.5615 -0.8824 29 1 2.8720 -3.6089 -0.8768 30 1 2.8720 -3.5996 0.9032 31 1 3.9889 -5.2594 0.3896 32 1 3.9722 -7.0207 0.4414 33 1 5.1947 -6.5302 -1.5075 34 1 4.1112 -5.1973 -1.9690 35 1 3.9169 -7.4791 -3.2637 36 1 2.4243 -6.6659 -2.7470 37 1 3.6047 -8.5141 -0.7592 38 1 2.9608 -9.2740 -2.2457 39 1 0.9906 -9.0746 -1.0515 40 1 1.0068 -7.5111 -1.8786 41 1 0.0726 -6.9864 2.6714 42 1 -2.5883 -6.5966 2.4205 43 1 -3.1495 -6.7526 -0.1343 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292116778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:00 Heat of formation + Delta-G solvation = -39.792770 kcal Electronic energy + Delta-G solvation = -24502.280700 eV Core-core repulsion = 21127.399195 eV Total energy + Delta-G solvation = -3374.881505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.43418 -41.24607 -38.73329 -35.68545 -34.79201 -34.53781 -33.64591 -32.69791 -30.13300 -28.21182 -27.28736 -25.91251 -24.25603 -22.91525 -22.21080 -21.63781 -21.00448 -19.67378 -18.89292 -18.14034 -17.55440 -17.26792 -16.65364 -16.44454 -16.29184 -15.79529 -15.56172 -15.25698 -14.89691 -14.67074 -14.24008 -13.94084 -13.69643 -13.60225 -13.47423 -13.32729 -13.18262 -13.01241 -12.79090 -12.52052 -12.39145 -12.18919 -11.95783 -11.62835 -11.54844 -11.40060 -11.33317 -11.27850 -10.87023 -10.57858 -10.52359 -9.61098 -8.96273 -8.19273 -6.34006 0.88805 1.39982 1.44866 1.52594 1.72955 1.76690 2.20610 2.25898 2.42303 3.13344 3.44532 3.85563 3.92705 3.97449 4.09295 4.15739 4.20703 4.27823 4.32681 4.39730 4.45938 4.48738 4.54229 4.65432 4.86991 4.88788 4.97026 5.04546 5.06589 5.07228 5.20392 5.27199 5.30878 5.34814 5.43061 5.45190 5.48516 5.60761 5.66110 5.76131 5.83077 6.15978 6.36235 6.50879 6.84238 7.32320 7.36815 8.93155 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.005181 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.214929 B = 5403.551414 C = 6794.544986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.050 3.950 10 C -0.112 4.112 11 C 0.505 3.495 12 O -0.552 6.552 13 N -0.604 5.604 14 C 0.097 3.903 15 C -0.135 4.135 16 C -0.122 4.122 17 C -0.103 4.103 18 C -0.136 4.136 19 C 0.230 3.770 20 H 0.140 0.860 21 C 0.016 3.984 22 C -0.231 4.231 23 C -0.223 4.223 24 C -0.056 4.056 25 O -0.183 6.183 26 H 0.262 0.738 27 H -0.022 1.022 28 H -0.024 1.024 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.027 0.973 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 -20.808 -0.280 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.013 3.987 10 C -0.151 4.151 11 C 0.294 3.706 12 O -0.430 6.430 13 N -0.339 5.339 14 C -0.026 4.026 15 C -0.174 4.174 16 C -0.159 4.159 17 C -0.140 4.140 18 C -0.174 4.174 19 C 0.130 3.870 20 H 0.158 0.842 21 C -0.034 4.034 22 C -0.251 4.251 23 C -0.242 4.242 24 C -0.123 4.123 25 O -0.079 6.079 26 H 0.071 0.929 27 H -0.003 1.003 28 H -0.006 1.006 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.165 0.835 42 H 0.172 0.828 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 8.407 -20.732 -0.590 22.379 hybrid contribution -0.711 1.508 0.092 1.669 sum 7.696 -19.224 -0.497 20.713 Atomic orbital electron populations 1.70182 1.08376 1.27844 1.51381 1.26141 0.95692 1.03950 0.94525 0.85377 0.78085 0.77285 0.79533 1.18667 1.21273 1.18557 1.21666 0.93893 0.91635 1.50983 0.90746 1.18603 0.93471 0.92479 0.94167 1.21599 0.99143 0.90552 1.03833 1.21351 0.87976 0.86529 0.74705 1.90671 1.15994 1.86422 1.49919 1.48367 1.08271 1.04075 1.73144 1.21309 0.78203 1.05061 0.97986 1.22639 1.00719 0.99393 0.94659 1.21555 0.99218 0.96167 0.98998 1.21036 0.94001 0.97891 1.01114 1.20850 1.00005 1.00571 0.96002 1.19151 0.83259 0.84357 1.00210 0.84244 1.22045 0.90119 1.03455 0.87822 1.21535 0.95549 1.10084 0.97949 1.21928 0.96619 1.08268 0.97432 1.24320 0.89965 1.06007 0.91999 1.83898 1.16214 1.69729 1.38090 0.92888 1.00309 1.00575 0.88820 0.88349 0.90422 0.87450 0.87420 0.93411 0.90948 0.95413 0.88621 0.89590 0.90049 0.94232 0.83548 0.82798 0.76468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.75 13.29 21.45 0.28 -60.46 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 8 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.05 2.90 4.26 29.85 0.13 3.03 16 10 C -0.11 -4.71 4.13 29.85 0.12 -4.59 16 11 C 0.50 20.31 7.56 87.66 0.66 20.97 16 12 O -0.55 -27.29 11.92 17.47 0.21 -27.08 16 13 N -0.60 -16.89 2.58 -809.02 -2.08 -18.97 16 14 C 0.10 1.85 4.68 87.42 0.41 2.26 16 15 C -0.14 -2.33 6.40 31.70 0.20 -2.13 16 16 C -0.12 -2.23 5.65 30.30 0.17 -2.06 16 17 C -0.10 -1.49 5.76 29.51 0.17 -1.32 16 18 C -0.14 -2.91 4.21 28.35 0.12 -2.79 16 19 C 0.23 5.68 2.96 41.45 0.12 5.81 16 20 H 0.14 2.39 8.13 -2.39 -0.02 2.37 16 21 C 0.02 0.54 3.64 24.83 0.09 0.63 16 22 C -0.23 -7.74 10.19 22.19 0.23 -7.51 16 23 C -0.22 -7.43 10.91 22.19 0.24 -7.18 16 24 C -0.06 -1.85 11.98 66.97 0.80 -1.05 16 25 O -0.18 -6.75 9.20 18.01 0.17 -6.58 16 26 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 27 H -0.02 -1.41 8.10 -2.39 -0.02 -1.43 16 28 H -0.02 -1.59 8.10 -2.39 -0.02 -1.61 16 29 H 0.09 3.60 7.64 -2.39 -0.02 3.58 16 30 H 0.10 3.70 7.58 -2.38 -0.02 3.69 16 31 H 0.08 1.53 6.45 -2.39 -0.02 1.51 16 32 H 0.11 1.26 6.89 -2.39 -0.02 1.24 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.03 7.73 -2.39 -0.02 1.01 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.03 0.71 6.82 -2.39 -0.02 0.69 16 37 H 0.10 0.95 6.28 -2.39 -0.01 0.94 16 38 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.15 6.66 -2.38 -0.02 1.13 16 41 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 42 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.22 5.58 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -81.72 337.90 5.75 -75.97 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.99 Total: 17.43 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 4.16 Total: -27.26 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -1.80 Total: -79.43 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: 0.37 Total: -33.66 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -81.72 5.75 -75.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292116778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.174 kcal (2) G-P(sol) polarization free energy of solvation -81.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds