Wall clock time and date at job start Tue Mar 31 2020 07:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86802 * 119.99884 * 2 1 4 4 H 1.48504 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46854 * 299.99476 * 3 2 1 6 6 H 1.48495 * 109.47331 * 59.99756 * 3 2 1 7 7 C 1.38654 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99503 * 180.02562 * 7 2 1 9 9 O 1.34826 * 120.00215 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00466 * 185.05695 * 9 7 2 11 11 C 1.38877 * 120.06307 * 354.47026 * 10 9 7 12 12 C 1.38105 * 119.92960 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06588 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.92793 * 179.97438 * 13 12 11 15 15 N 1.46908 * 109.47102 * 90.00064 * 14 13 12 16 16 C 1.47803 * 110.99823 * 291.97183 * 15 14 13 17 17 C 1.45865 * 112.92207 * 153.87658 * 16 15 14 18 18 C 1.54513 * 111.59494 * 61.32339 * 17 16 15 19 19 C 1.50460 * 108.85060 * 282.81268 * 18 17 16 20 20 H 1.09002 * 108.77187 * 331.23593 * 19 18 17 21 21 O 1.42898 * 108.77129 * 212.95208 * 19 18 17 22 22 C 1.54289 * 113.02949 * 92.14847 * 19 18 17 23 23 C 1.44264 * 111.00155 * 169.99850 * 15 14 13 24 24 C 1.38304 * 120.13866 * 0.25197 * 13 12 11 25 25 C 1.38095 * 120.06998 * 359.45115 * 24 13 12 26 26 H 0.97001 * 120.00116 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.03750 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96340 * 179.97438 * 12 11 10 29 29 H 1.08993 * 109.47443 * 330.00143 * 14 13 12 30 30 H 1.09003 * 109.47144 * 209.99648 * 14 13 12 31 31 H 1.09004 * 108.78975 * 274.76195 * 16 15 14 32 32 H 1.08995 * 108.79423 * 33.10067 * 16 15 14 33 33 H 1.08990 * 109.05656 * 181.86945 * 17 16 15 34 34 H 1.09000 * 109.05126 * 300.78418 * 17 16 15 35 35 H 1.08998 * 109.56987 * 42.61970 * 18 17 16 36 36 H 1.08996 * 109.57484 * 163.00366 * 18 17 16 37 37 H 0.96698 * 113.99884 * 59.99874 * 21 19 18 38 38 H 1.09003 * 108.91735 * 197.56933 * 22 19 18 39 39 H 1.09002 * 108.91393 * 79.02899 * 22 19 18 40 40 H 1.09008 * 108.97962 * 339.94866 * 23 15 14 41 41 H 1.09001 * 108.98078 * 98.65835 * 23 15 14 42 42 H 1.07997 * 119.96081 * 179.70994 * 24 13 12 43 43 H 1.07998 * 120.03587 * 180.27189 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0700 -3.5046 0.1087 11 6 3.4571 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5687 -5.8202 0.3253 14 6 4.3850 -7.0815 0.4430 15 7 4.6573 -7.3581 1.8599 16 6 5.5683 -6.3444 2.4319 17 6 5.4074 -6.1844 3.8727 18 6 5.7201 -7.4950 4.6289 19 6 4.5498 -8.4298 4.4860 20 1 3.6414 -7.8391 4.3676 21 8 4.4373 -9.2113 5.6770 22 6 4.6827 -9.3832 3.2801 23 6 5.2316 -8.6706 2.0294 24 6 2.1874 -5.8889 0.3332 25 6 1.4366 -4.7344 0.2312 26 1 -0.4850 0.8400 -0.0004 27 1 3.9526 -2.4844 0.0000 28 1 5.2812 -4.5470 0.1930 29 1 5.3272 -6.9556 -0.0901 30 1 3.8310 -7.9145 0.0102 31 1 6.5969 -6.6396 2.2241 32 1 5.3744 -5.3862 1.9499 33 1 6.0820 -5.4027 4.2215 34 1 4.3804 -5.8873 4.0852 35 1 6.6111 -7.9577 4.2045 36 1 5.8866 -7.2771 5.6838 37 1 4.2969 -8.6887 6.4785 38 1 3.7019 -9.7987 3.0484 39 1 5.3557 -10.1982 3.5465 40 1 5.0047 -9.2731 1.1498 41 1 6.3135 -8.5749 2.1221 42 1 1.6955 -6.8461 0.4236 43 1 0.3580 -4.7883 0.2418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293052356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:24 Heat of formation + Delta-G solvation = -49.974002 kcal Electronic energy + Delta-G solvation = -23311.194957 eV Core-core repulsion = 19935.871961 eV Total energy + Delta-G solvation = -3375.322996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -39.80945 -38.86206 -37.20863 -36.10201 -33.42340 -32.39793 -31.94121 -30.17635 -29.68371 -26.70046 -25.50954 -24.58153 -23.82089 -21.99718 -20.82635 -20.26103 -19.76937 -17.98148 -17.49507 -16.91811 -16.20034 -15.61254 -15.03749 -14.66871 -14.57453 -14.28451 -14.15631 -13.88892 -13.58734 -13.49348 -13.29636 -12.90068 -12.70246 -12.49171 -12.28681 -11.95697 -11.69530 -11.43440 -11.36608 -11.13413 -11.01552 -10.78797 -10.61980 -10.56875 -10.51301 -10.42022 -10.35215 -9.89689 -9.33250 -8.84413 -8.27149 -8.15556 -7.17771 -6.45935 -4.04776 2.21604 2.28095 3.10791 3.12495 3.17970 3.93685 3.96304 4.08590 4.59957 4.72179 4.78161 4.97778 5.02358 5.10303 5.15741 5.26537 5.27274 5.32429 5.40815 5.50743 5.56208 5.59897 5.67502 5.75578 5.78602 5.87715 5.91998 5.99583 6.03633 6.15859 6.19852 6.21638 6.31073 6.43452 6.70879 6.89822 7.01647 7.12060 7.21003 7.30278 7.39750 7.44426 7.58227 7.83073 7.99206 8.99872 9.70584 10.72219 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.003354 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.904280 B = 8345.107267 C = 8663.927038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.234 4.234 12 C -0.067 4.067 13 C -0.177 4.177 14 C 0.114 3.886 15 N -0.526 5.526 16 C 0.046 3.954 17 C -0.114 4.114 18 C -0.146 4.146 19 C 0.113 3.887 20 H 0.061 0.939 21 O -0.581 6.581 22 C -0.099 4.099 23 C 0.057 3.943 24 C -0.052 4.052 25 C -0.194 4.194 26 H 0.269 0.731 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.375 0.625 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.039 0.961 42 H 0.111 0.889 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.404 -13.976 5.904 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.086 4.086 13 C -0.179 4.179 14 C -0.013 4.013 15 N -0.250 5.250 16 C -0.081 4.081 17 C -0.152 4.152 18 C -0.184 4.184 19 C 0.054 3.946 20 H 0.079 0.921 21 O -0.387 6.387 22 C -0.137 4.137 23 C -0.072 4.072 24 C -0.071 4.071 25 C -0.213 4.213 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.121 0.879 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.222 0.778 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.129 0.871 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.606 -14.230 5.688 18.637 hybrid contribution 1.212 1.358 -0.019 1.820 sum 11.818 -12.873 5.669 18.372 Atomic orbital electron populations 1.70048 1.05950 1.27543 1.46200 1.25286 0.95833 0.98816 0.96595 0.85658 0.79116 0.80443 0.78268 1.19135 1.20144 1.20133 1.21362 0.91787 0.80846 1.52772 0.89071 1.83980 1.34377 1.11480 1.78373 1.19392 0.90257 0.88048 0.92101 1.21112 0.93841 0.98757 1.11643 1.20575 0.97856 0.92008 0.98136 1.19057 0.93610 0.93358 1.11850 1.20903 0.97256 0.96173 0.86928 1.61667 1.45062 1.01345 1.16893 1.21132 0.93327 0.97532 0.96103 1.20541 1.02935 0.96626 0.95098 1.22118 0.99381 0.96422 1.00432 1.21576 0.97381 0.91305 0.84315 0.92053 1.86468 1.95901 1.38816 1.17489 1.21820 1.01979 0.97268 0.92677 1.21881 0.96853 0.91079 0.97423 1.20445 0.92810 0.96651 0.97201 1.20222 0.99565 0.90355 1.11160 0.92075 0.85699 0.87936 0.94937 0.90734 0.95180 0.89802 0.91595 0.90840 0.91798 0.91651 0.77833 0.91476 0.91599 0.91464 0.94282 0.87109 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -10.89 9.49 30.89 0.29 -10.59 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 9 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16 10 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 11 C -0.23 -4.99 9.17 -39.39 -0.36 -5.35 16 12 C -0.07 -1.18 7.98 -39.61 -0.32 -1.50 16 13 C -0.18 -2.92 5.04 -104.58 -0.53 -3.45 16 14 C 0.11 1.49 4.92 -4.97 -0.02 1.46 16 15 N -0.53 -6.50 4.20 -241.00 -1.01 -7.51 16 16 C 0.05 0.56 4.77 -6.70 -0.03 0.52 16 17 C -0.11 -1.27 5.53 -29.31 -0.16 -1.43 16 18 C -0.15 -1.45 5.29 -27.21 -0.14 -1.59 16 19 C 0.11 1.23 3.06 -27.32 -0.08 1.15 16 20 H 0.06 0.76 7.38 -51.93 -0.38 0.38 16 21 O -0.58 -6.30 13.21 -35.23 -0.47 -6.77 16 22 C -0.10 -1.06 5.77 -25.50 -0.15 -1.20 16 23 C 0.06 0.59 5.17 -4.68 -0.02 0.57 16 24 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 25 C -0.19 -4.07 9.99 -39.40 -0.39 -4.47 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.13 2.69 5.64 -52.48 -0.30 2.39 16 28 H 0.10 1.56 7.37 -52.49 -0.39 1.17 16 29 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 30 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 31 H 0.03 0.33 7.24 -51.93 -0.38 -0.04 16 32 H 0.08 1.15 4.75 -51.93 -0.25 0.90 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.93 7.59 -51.93 -0.39 0.54 16 35 H 0.06 0.64 7.15 -51.93 -0.37 0.27 16 36 H 0.06 0.57 7.85 -51.93 -0.41 0.16 16 37 H 0.37 2.63 8.91 45.56 0.41 3.03 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.64 7.36 -51.92 -0.38 0.25 16 41 H 0.04 0.39 6.51 -51.93 -0.34 0.05 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -30.80 337.27 -8.84 -39.64 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.52 Total: 6.49 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -2.66 Total: -22.75 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: -0.25 Total: -31.99 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.46 Total: -11.86 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.80 -8.84 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293052356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.334 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds