Wall clock time and date at job start Tue Mar 31 2020 07:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86802 * 119.99884 * 2 1 4 4 H 1.48504 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46854 * 299.99476 * 3 2 1 6 6 H 1.48495 * 109.47331 * 59.99756 * 3 2 1 7 7 C 1.38654 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99503 * 180.02562 * 7 2 1 9 9 O 1.34826 * 120.00215 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00466 * 185.05695 * 9 7 2 11 11 C 1.38877 * 120.06307 * 354.47026 * 10 9 7 12 12 C 1.38105 * 119.92960 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06588 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.92793 * 179.97438 * 13 12 11 15 15 N 1.46908 * 109.47102 * 90.00064 * 14 13 12 16 16 C 1.47803 * 110.99823 * 291.97183 * 15 14 13 17 17 C 1.45865 * 112.92207 * 153.87658 * 16 15 14 18 18 C 1.54513 * 111.59494 * 61.32339 * 17 16 15 19 19 C 1.50460 * 108.85060 * 282.81268 * 18 17 16 20 20 H 1.09002 * 108.77187 * 331.23593 * 19 18 17 21 21 O 1.42898 * 108.77129 * 212.95208 * 19 18 17 22 22 C 1.54289 * 113.02949 * 92.14847 * 19 18 17 23 23 C 1.44264 * 111.00155 * 169.99850 * 15 14 13 24 24 C 1.38304 * 120.13866 * 0.25197 * 13 12 11 25 25 C 1.38095 * 120.06998 * 359.45115 * 24 13 12 26 26 H 0.97001 * 120.00116 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.03750 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96340 * 179.97438 * 12 11 10 29 29 H 1.08993 * 109.47443 * 330.00143 * 14 13 12 30 30 H 1.09003 * 109.47144 * 209.99648 * 14 13 12 31 31 H 1.09004 * 108.78975 * 274.76195 * 16 15 14 32 32 H 1.08995 * 108.79423 * 33.10067 * 16 15 14 33 33 H 1.08990 * 109.05656 * 181.86945 * 17 16 15 34 34 H 1.09000 * 109.05126 * 300.78418 * 17 16 15 35 35 H 1.08998 * 109.56987 * 42.61970 * 18 17 16 36 36 H 1.08996 * 109.57484 * 163.00366 * 18 17 16 37 37 H 0.96698 * 113.99884 * 59.99874 * 21 19 18 38 38 H 1.09003 * 108.91735 * 197.56933 * 22 19 18 39 39 H 1.09002 * 108.91393 * 79.02899 * 22 19 18 40 40 H 1.09008 * 108.97962 * 339.94866 * 23 15 14 41 41 H 1.09001 * 108.98078 * 98.65835 * 23 15 14 42 42 H 1.07997 * 119.96081 * 179.70994 * 24 13 12 43 43 H 1.07998 * 120.03587 * 180.27189 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0700 -3.5046 0.1087 11 6 3.4571 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5687 -5.8202 0.3253 14 6 4.3850 -7.0815 0.4430 15 7 4.6573 -7.3581 1.8599 16 6 5.5683 -6.3444 2.4319 17 6 5.4074 -6.1844 3.8727 18 6 5.7201 -7.4950 4.6289 19 6 4.5498 -8.4298 4.4860 20 1 3.6414 -7.8391 4.3676 21 8 4.4373 -9.2113 5.6770 22 6 4.6827 -9.3832 3.2801 23 6 5.2316 -8.6706 2.0294 24 6 2.1874 -5.8889 0.3332 25 6 1.4366 -4.7344 0.2312 26 1 -0.4850 0.8400 -0.0004 27 1 3.9526 -2.4844 0.0000 28 1 5.2812 -4.5470 0.1930 29 1 5.3272 -6.9556 -0.0901 30 1 3.8310 -7.9145 0.0102 31 1 6.5969 -6.6396 2.2241 32 1 5.3744 -5.3862 1.9499 33 1 6.0820 -5.4027 4.2215 34 1 4.3804 -5.8873 4.0852 35 1 6.6111 -7.9577 4.2045 36 1 5.8866 -7.2771 5.6838 37 1 4.2969 -8.6887 6.4785 38 1 3.7019 -9.7987 3.0484 39 1 5.3557 -10.1982 3.5465 40 1 5.0047 -9.2731 1.1498 41 1 6.3135 -8.5749 2.1221 42 1 1.6955 -6.8461 0.4236 43 1 0.3580 -4.7883 0.2418 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293052356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:16 Heat of formation + Delta-G solvation = -71.507940 kcal Electronic energy + Delta-G solvation = -23312.128738 eV Core-core repulsion = 19935.871961 eV Total energy + Delta-G solvation = -3376.256778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.39 seconds Orbital eigenvalues (eV) -41.01758 -40.28252 -38.53413 -37.34647 -34.52297 -34.13645 -32.97770 -31.75866 -31.02502 -27.92455 -27.24059 -25.56004 -24.95324 -23.60152 -22.13444 -21.42108 -20.61252 -19.82048 -18.82808 -18.28308 -17.12773 -16.68159 -16.42329 -16.31097 -15.76523 -15.69386 -15.48409 -15.18515 -14.95389 -14.68747 -14.40674 -14.36532 -13.95439 -13.67015 -13.58557 -13.18927 -13.02100 -12.96968 -12.50508 -12.44962 -12.28035 -12.10486 -11.96784 -11.90587 -11.66899 -11.37606 -11.34084 -11.13568 -10.78973 -10.73295 -9.73132 -9.21500 -8.87233 -8.46724 -6.14791 0.62137 0.70183 1.34788 1.43129 1.53101 2.17671 2.74930 3.03329 3.30647 3.32904 3.54627 3.89399 3.93453 4.02424 4.06603 4.14466 4.22891 4.27300 4.32344 4.42203 4.52392 4.61939 4.64068 4.71243 4.74782 4.83520 4.85787 4.89623 5.04117 5.10970 5.13142 5.16551 5.20887 5.29941 5.32462 5.36672 5.45533 5.60034 5.73163 5.83154 6.03980 6.17638 6.23906 6.35762 6.92303 6.98227 7.80233 8.76937 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.003354 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.904280 B = 8345.107267 C = 8663.927038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.114 3.886 11 C -0.242 4.242 12 C -0.061 4.061 13 C -0.150 4.150 14 C 0.116 3.884 15 N -0.538 5.538 16 C 0.045 3.955 17 C -0.113 4.113 18 C -0.137 4.137 19 C 0.113 3.887 20 H 0.041 0.959 21 O -0.593 6.593 22 C -0.099 4.099 23 C 0.059 3.941 24 C -0.048 4.048 25 C -0.207 4.207 26 H 0.272 0.728 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.390 0.610 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.143 0.857 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.577 -16.043 6.269 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.119 0.881 9 O -0.142 6.142 10 C 0.064 3.936 11 C -0.261 4.261 12 C -0.079 4.079 13 C -0.151 4.151 14 C -0.011 4.011 15 N -0.262 5.262 16 C -0.082 4.082 17 C -0.151 4.151 18 C -0.175 4.175 19 C 0.055 3.945 20 H 0.059 0.941 21 O -0.402 6.402 22 C -0.137 4.137 23 C -0.069 4.069 24 C -0.066 4.066 25 C -0.226 4.226 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.154 0.846 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.239 0.761 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.161 0.839 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.814 -16.356 6.069 22.252 hybrid contribution 0.338 1.621 -0.054 1.657 sum 14.152 -14.735 6.014 21.297 Atomic orbital electron populations 1.70194 1.08045 1.28683 1.49101 1.26588 0.96843 1.02736 0.95948 0.84534 0.78262 0.74876 0.78554 1.17414 1.19341 1.19382 1.21850 0.92478 0.81464 1.53017 0.88134 1.83942 1.36036 1.12646 1.81550 1.19924 0.91646 0.87860 0.94209 1.21204 0.93011 0.99954 1.11962 1.20912 0.99376 0.91065 0.96591 1.19581 0.93519 0.94725 1.07264 1.20935 0.97685 0.94536 0.87925 1.61567 1.46000 1.02449 1.16172 1.21154 0.94199 0.96595 0.96234 1.20512 1.01837 0.97659 0.95055 1.22035 0.98988 0.95346 1.01084 1.21533 0.96907 0.91359 0.84702 0.94129 1.86436 1.95904 1.39601 1.18230 1.21830 1.01823 0.97372 0.92720 1.21892 0.97290 0.89917 0.97806 1.20821 0.93484 0.96619 0.95697 1.20457 0.99826 0.90733 1.11577 0.91885 0.86585 0.84614 0.93080 0.88821 0.93474 0.91580 0.90630 0.93075 0.91161 0.90460 0.76094 0.92189 0.90950 0.89968 0.93171 0.83938 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.02 13.67 21.61 0.30 -56.73 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 42.97 29.55 68.60 2.03 45.00 16 4 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.41 -24.14 9.49 67.92 0.64 -23.50 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 9 O -0.23 -14.30 9.76 -22.72 -0.22 -14.52 16 10 C 0.11 5.70 6.65 22.58 0.15 5.85 16 11 C -0.24 -10.44 9.17 22.39 0.21 -10.24 16 12 C -0.06 -2.03 7.98 22.25 0.18 -1.85 16 13 C -0.15 -4.49 5.04 -19.83 -0.10 -4.59 16 14 C 0.12 2.49 4.92 85.55 0.42 2.91 16 15 N -0.54 -11.25 4.20 -916.40 -3.85 -15.10 16 16 C 0.05 0.94 4.77 83.94 0.40 1.34 16 17 C -0.11 -2.24 5.53 28.92 0.16 -2.08 16 18 C -0.14 -2.32 5.29 30.29 0.16 -2.16 16 19 C 0.11 2.23 3.06 30.21 0.09 2.33 16 20 H 0.04 0.96 7.38 -2.39 -0.02 0.94 16 21 O -0.59 -11.63 13.21 -148.98 -1.97 -13.59 16 22 C -0.10 -1.81 5.77 31.39 0.18 -1.63 16 23 C 0.06 0.99 5.17 87.15 0.45 1.44 16 24 C -0.05 -1.60 9.69 22.25 0.22 -1.39 16 25 C -0.21 -8.90 9.99 22.39 0.22 -8.68 16 26 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16 28 H 0.14 3.63 7.37 -2.91 -0.02 3.61 16 29 H 0.05 0.97 8.05 -2.39 -0.02 0.95 16 30 H 0.09 1.75 7.71 -2.39 -0.02 1.73 16 31 H 0.05 0.84 7.24 -2.38 -0.02 0.82 16 32 H 0.07 1.60 4.75 -2.39 -0.01 1.59 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.24 7.59 -2.39 -0.02 1.23 16 35 H 0.07 1.14 7.15 -2.39 -0.02 1.12 16 36 H 0.08 1.13 7.85 -2.39 -0.02 1.11 16 37 H 0.39 4.72 8.91 -74.06 -0.66 4.06 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.15 7.36 -2.38 -0.02 1.13 16 41 H 0.05 0.76 6.51 -2.39 -0.02 0.74 16 42 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -71.57 337.27 0.49 -71.07 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.36 Total: 27.04 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 3.85 Total: -43.16 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -3.56 Total: -71.83 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -2.19 Total: -28.12 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -71.57 0.49 -71.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293052356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.434 kcal (2) G-P(sol) polarization free energy of solvation -71.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds