Wall clock time and date at job start Tue Mar 31 2020 07:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 O 1.42895 * 109.47147 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47084 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46904 * 65.00410 * 12 11 10 14 14 C 1.46904 * 110.99905 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.43575 * 32.45177 * 14 13 12 16 16 C 1.54815 * 110.48373 * 269.76533 * 14 13 12 17 17 C 1.54992 * 102.08678 * 262.20017 * 16 14 13 18 18 O 1.44378 * 103.49907 * 322.97977 * 17 16 14 19 19 C 1.43747 * 106.97226 * 40.05898 * 18 17 16 20 20 H 1.08999 * 109.87952 * 92.91305 * 19 18 17 21 21 C 1.50697 * 110.00276 * 213.99508 * 19 18 17 22 22 C 1.38234 * 120.00249 * 37.63826 * 21 19 18 23 23 C 1.38232 * 120.00325 * 179.78928 * 22 21 19 24 24 C 1.38236 * 119.99542 * 0.43465 * 23 22 21 25 25 C 1.38229 * 120.00193 * 359.81701 * 24 23 22 26 26 C 1.38235 * 119.99789 * 217.90580 * 21 19 18 27 27 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 29 29 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 30 30 H 1.08995 * 109.47354 * 300.00131 * 11 10 9 31 31 H 1.09003 * 109.47182 * 59.99587 * 11 10 9 32 32 H 1.09001 * 109.46944 * 185.00182 * 12 11 10 33 33 H 1.08998 * 109.47273 * 305.00092 * 12 11 10 34 34 H 1.00902 * 110.99426 * 303.94690 * 13 12 11 35 35 H 1.08993 * 110.90876 * 20.40000 * 16 14 13 36 36 H 1.09000 * 110.90310 * 144.01214 * 16 14 13 37 37 H 1.09000 * 110.61903 * 204.47361 * 17 16 14 38 38 H 1.09004 * 110.62058 * 81.48558 * 17 16 14 39 39 H 1.07999 * 119.99986 * 359.97438 * 22 21 19 40 40 H 1.07997 * 120.00576 * 180.26945 * 23 22 21 41 41 H 1.08005 * 120.00028 * 179.83278 * 24 23 22 42 42 H 1.08002 * 120.00200 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.00321 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5412 0.0010 11 6 5.4125 -2.6540 0.0009 12 6 5.8070 -4.1323 0.0015 13 7 5.3677 -4.7567 -1.2536 14 6 5.7309 -6.1797 -1.2889 15 1 5.7030 -6.6046 -0.2855 16 6 7.1321 -6.3657 -1.9205 17 6 6.7817 -6.7349 -3.3844 18 8 5.5997 -7.5534 -3.2519 19 6 4.7869 -6.9541 -2.2290 20 1 4.0690 -6.2690 -2.6799 21 6 4.0587 -8.0238 -1.4566 22 6 4.6876 -9.2220 -1.1744 23 6 4.0213 -10.2015 -0.4621 24 6 2.7227 -9.9862 -0.0398 25 6 2.0920 -8.7901 -0.3265 26 6 2.7599 -7.8089 -1.0350 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6803 -0.8889 29 1 3.8746 -0.6798 0.8911 30 1 5.8152 -2.1704 -0.8890 31 1 5.8153 -2.1704 0.8909 32 1 6.8898 -4.2193 0.0910 33 1 5.3312 -4.6350 0.8435 34 1 4.3758 -4.6328 -1.3912 35 1 7.7035 -5.4385 -1.8793 36 1 7.6735 -7.1769 -1.4337 37 1 7.5923 -7.3025 -3.8417 38 1 6.5646 -5.8383 -3.9651 39 1 5.7008 -9.3917 -1.5078 40 1 4.5141 -11.1359 -0.2379 41 1 2.2010 -10.7525 0.5144 42 1 1.0776 -8.6217 0.0038 43 1 2.2671 -6.8742 -1.2589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294676545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:47 Heat of formation + Delta-G solvation = -65.187785 kcal Electronic energy + Delta-G solvation = -22953.594570 eV Core-core repulsion = 19577.611855 eV Total energy + Delta-G solvation = -3375.982715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33096 -38.53837 -37.26933 -35.24009 -32.69732 -32.17250 -31.15839 -30.94202 -28.97411 -27.71031 -26.28638 -23.49500 -22.51247 -22.14407 -21.83847 -20.98324 -20.56779 -17.39737 -16.91942 -16.65636 -16.01597 -15.84198 -15.65172 -15.33443 -14.84079 -14.52761 -14.33189 -14.14780 -13.92732 -13.45816 -13.40686 -13.10458 -12.88068 -12.57617 -12.17733 -12.10260 -11.93280 -11.64442 -11.36787 -11.09200 -11.07095 -11.05967 -10.93669 -10.73554 -10.50815 -9.89367 -9.86779 -9.22351 -8.97992 -8.90118 -8.84593 -8.50855 -8.36267 -6.14484 -4.13818 1.22062 1.34671 3.23092 3.30172 3.31279 3.55863 3.82898 4.20656 4.33129 4.39913 4.60540 4.64260 4.82917 4.87654 4.92825 4.99135 5.06347 5.17233 5.21730 5.33494 5.36868 5.43573 5.52889 5.60846 5.63935 5.67508 5.80493 5.81477 5.87848 5.90400 5.99938 6.01652 6.15666 6.37715 6.44364 6.49465 6.57894 6.74697 6.91642 6.96674 7.07980 7.45871 7.56809 7.96769 8.62383 8.95639 9.44768 10.98474 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.003576 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.327495 B = 7828.441613 C = 8953.369808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.384 6.384 11 C 0.058 3.942 12 C 0.066 3.934 13 N -0.677 5.677 14 C 0.062 3.938 15 H 0.062 0.938 16 C -0.145 4.145 17 C 0.050 3.950 18 O -0.368 6.368 19 C 0.117 3.883 20 H 0.086 0.914 21 C -0.089 4.089 22 C -0.096 4.096 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.106 4.106 27 H 0.267 0.733 28 H -0.001 1.001 29 H 0.002 0.998 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.359 0.641 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.642 -17.548 -2.318 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.304 6.304 11 C -0.020 4.020 12 C -0.063 4.063 13 N -0.312 5.312 14 C -0.049 4.049 15 H 0.080 0.920 16 C -0.183 4.183 17 C -0.026 4.026 18 O -0.287 6.287 19 C 0.059 3.941 20 H 0.103 0.897 21 C -0.089 4.089 22 C -0.114 4.114 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.124 4.124 27 H 0.077 0.923 28 H 0.017 0.983 29 H 0.020 0.980 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.180 0.820 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.838 -17.560 -2.784 22.530 hybrid contribution -0.058 1.053 0.787 1.316 sum 13.780 -16.507 -1.997 21.595 Atomic orbital electron populations 1.69872 1.06065 1.27130 1.50268 1.24760 0.94798 0.98770 0.94586 0.86848 0.80319 0.83753 0.78811 1.19881 1.20787 1.19135 1.20876 0.88262 0.95279 1.51354 0.90034 1.20578 0.96099 0.79348 0.94359 1.87840 1.17620 1.29817 1.95096 1.22374 0.84928 0.95035 0.99670 1.21989 0.99633 0.94212 0.90459 1.60607 1.23756 1.11140 1.35662 1.22900 0.94476 0.89031 0.98487 0.92015 1.23175 0.96649 1.02435 0.96053 1.23539 0.87412 0.95185 0.96505 1.88889 1.32994 1.50455 1.56374 1.21758 0.92741 0.92036 0.87563 0.89656 1.19783 0.94465 0.95523 0.99130 1.20942 1.00148 0.92901 0.97425 1.21134 0.95138 0.99195 0.99017 1.21182 0.95192 0.97441 1.00056 1.21158 1.00190 0.93646 0.98665 1.21108 0.93700 0.99667 0.97901 0.92339 0.98285 0.98043 0.93343 0.93915 0.90517 0.94378 0.82030 0.89296 0.90868 0.89282 0.91440 0.85887 0.86194 0.86185 0.85715 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.42 13.96 55.43 0.77 -26.64 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -15.27 9.99 -34.44 -0.34 -15.61 16 8 H 0.08 2.61 8.06 -52.49 -0.42 2.18 16 9 C 0.17 4.29 4.76 36.01 0.17 4.46 16 10 O -0.38 -8.61 9.85 -35.23 -0.35 -8.96 16 11 C 0.06 0.98 6.28 37.16 0.23 1.21 16 12 C 0.07 0.92 5.97 -3.82 -0.02 0.90 16 13 N -0.68 -9.36 6.30 -105.10 -0.66 -10.02 16 14 C 0.06 0.74 3.00 -66.18 -0.20 0.54 16 15 H 0.06 0.77 7.37 -51.93 -0.38 0.39 16 16 C -0.14 -1.43 6.88 -24.72 -0.17 -1.60 16 17 C 0.05 0.51 7.72 38.21 0.29 0.80 16 18 O -0.37 -4.68 10.47 -35.23 -0.37 -5.05 16 19 C 0.12 1.47 3.32 -27.31 -0.09 1.38 16 20 H 0.09 1.14 7.40 -51.93 -0.38 0.76 16 21 C -0.09 -1.12 4.77 -104.63 -0.50 -1.62 16 22 C -0.10 -1.11 9.37 -39.58 -0.37 -1.48 16 23 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 24 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 25 C -0.12 -1.36 10.05 -39.59 -0.40 -1.75 16 26 C -0.11 -1.34 9.68 -39.58 -0.38 -1.72 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.00 -0.01 7.57 -51.93 -0.39 -0.41 16 29 H 0.00 0.05 7.20 -51.93 -0.37 -0.33 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.36 5.61 7.62 -39.29 -0.30 5.31 16 35 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.12 1.31 7.73 -52.49 -0.41 0.90 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.13 1.59 8.05 -52.48 -0.42 1.17 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -31.70 354.58 -9.49 -41.19 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.89 Total: 3.34 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.67 Total: -15.81 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.11 Total: -36.66 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.72 Total: -14.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.70 -9.49 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294676545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.994 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds