Wall clock time and date at job start Tue Mar 31 2020 07:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 O 1.42895 * 109.47147 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47084 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46904 * 65.00410 * 12 11 10 14 14 C 1.46904 * 110.99905 * 179.97438 * 13 12 11 15 15 H 1.09003 * 110.43575 * 32.45177 * 14 13 12 16 16 C 1.54815 * 110.48373 * 269.76533 * 14 13 12 17 17 C 1.54992 * 102.08678 * 262.20017 * 16 14 13 18 18 O 1.44378 * 103.49907 * 322.97977 * 17 16 14 19 19 C 1.43747 * 106.97226 * 40.05898 * 18 17 16 20 20 H 1.08999 * 109.87952 * 92.91305 * 19 18 17 21 21 C 1.50697 * 110.00276 * 213.99508 * 19 18 17 22 22 C 1.38234 * 120.00249 * 37.63826 * 21 19 18 23 23 C 1.38232 * 120.00325 * 179.78928 * 22 21 19 24 24 C 1.38236 * 119.99542 * 0.43465 * 23 22 21 25 25 C 1.38229 * 120.00193 * 359.81701 * 24 23 22 26 26 C 1.38235 * 119.99789 * 217.90580 * 21 19 18 27 27 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 29 29 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 30 30 H 1.08995 * 109.47354 * 300.00131 * 11 10 9 31 31 H 1.09003 * 109.47182 * 59.99587 * 11 10 9 32 32 H 1.09001 * 109.46944 * 185.00182 * 12 11 10 33 33 H 1.08998 * 109.47273 * 305.00092 * 12 11 10 34 34 H 1.00902 * 110.99426 * 303.94690 * 13 12 11 35 35 H 1.08993 * 110.90876 * 20.40000 * 16 14 13 36 36 H 1.09000 * 110.90310 * 144.01214 * 16 14 13 37 37 H 1.09000 * 110.61903 * 204.47361 * 17 16 14 38 38 H 1.09004 * 110.62058 * 81.48558 * 17 16 14 39 39 H 1.07999 * 119.99986 * 359.97438 * 22 21 19 40 40 H 1.07997 * 120.00576 * 180.26945 * 23 22 21 41 41 H 1.08005 * 120.00028 * 179.83278 * 24 23 22 42 42 H 1.08002 * 120.00200 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.00321 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5412 0.0010 11 6 5.4125 -2.6540 0.0009 12 6 5.8070 -4.1323 0.0015 13 7 5.3677 -4.7567 -1.2536 14 6 5.7309 -6.1797 -1.2889 15 1 5.7030 -6.6046 -0.2855 16 6 7.1321 -6.3657 -1.9205 17 6 6.7817 -6.7349 -3.3844 18 8 5.5997 -7.5534 -3.2519 19 6 4.7869 -6.9541 -2.2290 20 1 4.0690 -6.2690 -2.6799 21 6 4.0587 -8.0238 -1.4566 22 6 4.6876 -9.2220 -1.1744 23 6 4.0213 -10.2015 -0.4621 24 6 2.7227 -9.9862 -0.0398 25 6 2.0920 -8.7901 -0.3265 26 6 2.7599 -7.8089 -1.0350 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6803 -0.8889 29 1 3.8746 -0.6798 0.8911 30 1 5.8152 -2.1704 -0.8890 31 1 5.8153 -2.1704 0.8909 32 1 6.8898 -4.2193 0.0910 33 1 5.3312 -4.6350 0.8435 34 1 4.3758 -4.6328 -1.3912 35 1 7.7035 -5.4385 -1.8793 36 1 7.6735 -7.1769 -1.4337 37 1 7.5923 -7.3025 -3.8417 38 1 6.5646 -5.8383 -3.9651 39 1 5.7008 -9.3917 -1.5078 40 1 4.5141 -11.1359 -0.2379 41 1 2.2010 -10.7525 0.5144 42 1 1.0776 -8.6217 0.0038 43 1 2.2671 -6.8742 -1.2589 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294676545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:46 Heat of formation + Delta-G solvation = -86.433545 kcal Electronic energy + Delta-G solvation = -22954.515856 eV Core-core repulsion = 19577.611855 eV Total energy + Delta-G solvation = -3376.904000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25670 -39.44397 -38.82912 -36.46604 -34.84376 -33.09502 -32.24952 -31.81554 -30.43950 -29.24659 -27.45251 -24.37363 -24.01291 -23.42055 -23.15701 -21.99957 -21.50815 -19.07043 -18.28899 -17.76751 -17.28679 -16.93894 -16.81925 -16.63624 -16.36411 -15.80670 -15.42225 -15.24022 -15.03152 -14.92296 -14.52618 -14.27896 -14.05109 -13.79733 -13.50741 -13.38322 -13.18585 -12.88178 -12.74704 -12.51527 -12.23447 -12.05395 -11.94961 -11.92522 -11.83945 -11.77419 -11.36293 -10.93618 -10.79298 -10.37062 -9.87166 -9.77935 -9.42587 -8.38325 -6.46296 0.33408 0.45513 1.32930 1.35701 1.46395 2.28480 2.67447 2.86794 2.94625 3.07199 3.23674 3.49915 3.64285 3.91021 4.01384 4.08358 4.15448 4.17996 4.26183 4.32499 4.34512 4.48373 4.52185 4.55779 4.59872 4.67347 4.75375 4.78375 4.87458 4.90195 4.99667 5.00388 5.04802 5.07202 5.13133 5.42709 5.51606 5.57626 5.59454 5.80003 5.92136 6.05304 6.06235 6.23012 6.57589 6.72801 7.18347 8.78719 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.003576 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.327495 B = 7828.441613 C = 8953.369808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.545 4.545 8 H 0.030 0.970 9 C 0.182 3.818 10 O -0.408 6.408 11 C 0.051 3.949 12 C 0.073 3.927 13 N -0.681 5.681 14 C 0.065 3.935 15 H 0.058 0.942 16 C -0.135 4.135 17 C 0.046 3.954 18 O -0.382 6.382 19 C 0.119 3.881 20 H 0.065 0.935 21 C -0.103 4.103 22 C -0.104 4.104 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.131 4.131 27 H 0.273 0.727 28 H 0.010 0.990 29 H 0.012 0.988 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.028 0.972 34 H 0.343 0.657 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.059 0.941 39 H 0.133 0.867 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.134 0.866 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.599 -17.676 -1.923 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.583 4.583 8 H 0.049 0.951 9 C 0.106 3.894 10 O -0.327 6.327 11 C -0.026 4.026 12 C -0.056 4.056 13 N -0.314 5.314 14 C -0.045 4.045 15 H 0.076 0.924 16 C -0.173 4.173 17 C -0.030 4.030 18 O -0.301 6.301 19 C 0.061 3.939 20 H 0.083 0.917 21 C -0.103 4.103 22 C -0.122 4.122 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.149 4.149 27 H 0.082 0.918 28 H 0.028 0.972 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.046 0.954 34 H 0.162 0.838 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.151 0.849 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.152 0.848 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 16.826 -17.716 -2.390 24.550 hybrid contribution -1.027 0.952 0.649 1.543 sum 15.799 -16.764 -1.741 23.101 Atomic orbital electron populations 1.70030 1.08264 1.28772 1.51086 1.25827 0.95777 1.03392 0.93454 0.85615 0.79462 0.77555 0.79755 1.18477 1.19883 1.16833 1.21164 0.90998 0.93814 1.52333 0.95141 1.20279 0.93174 0.80915 0.94984 1.87809 1.21305 1.28346 1.95276 1.22703 0.81824 0.97375 1.00735 1.22007 1.01346 0.92143 0.90097 1.60702 1.22578 1.12526 1.35571 1.22913 0.95695 0.87666 0.98272 0.92379 1.23165 0.95207 1.03436 0.95525 1.23715 0.87208 0.95169 0.96909 1.88872 1.33876 1.50952 1.56410 1.21644 0.92634 0.91941 0.87689 0.91747 1.19863 0.94508 0.96256 0.99666 1.21128 1.00705 0.92644 0.97681 1.21508 0.95069 0.99875 0.97778 1.21528 0.95434 0.97353 0.99632 1.21387 1.00806 0.94035 0.98589 1.21168 0.94402 0.99869 0.99460 0.91812 0.97219 0.97076 0.92634 0.92265 0.87154 0.95356 0.83843 0.88624 0.89005 0.86723 0.92230 0.84906 0.83266 0.83490 0.84809 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.35 13.96 21.44 0.30 -59.05 16 2 C 0.01 0.80 5.47 84.65 0.46 1.26 16 3 Si 0.95 43.30 27.47 68.60 1.88 45.18 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 7 C -0.55 -33.15 9.99 25.60 0.26 -32.90 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 9 C 0.18 9.08 4.76 71.24 0.34 9.42 16 10 O -0.41 -18.46 9.85 -148.98 -1.47 -19.93 16 11 C 0.05 1.65 6.28 71.98 0.45 2.10 16 12 C 0.07 1.94 5.97 86.30 0.51 2.46 16 13 N -0.68 -18.81 6.30 -486.44 -3.06 -21.87 16 14 C 0.06 1.52 3.00 45.91 0.14 1.65 16 15 H 0.06 1.41 7.37 -2.39 -0.02 1.40 16 16 C -0.14 -2.39 6.88 31.90 0.22 -2.17 16 17 C 0.05 0.87 7.72 72.66 0.56 1.43 16 18 O -0.38 -9.58 10.47 -148.98 -1.56 -11.14 16 19 C 0.12 3.10 3.32 30.22 0.10 3.20 16 20 H 0.06 1.90 7.40 -2.39 -0.02 1.88 16 21 C -0.10 -2.66 4.77 -19.87 -0.09 -2.75 16 22 C -0.10 -2.29 9.37 22.27 0.21 -2.08 16 23 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 24 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 25 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 26 C -0.13 -3.55 9.68 22.27 0.22 -3.33 16 27 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 29 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 34 H 0.34 11.34 7.62 -89.69 -0.68 10.65 16 35 H 0.10 1.59 8.06 -2.39 -0.02 1.58 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.13 2.60 7.73 -2.91 -0.02 2.58 16 40 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.11 3.24 8.05 -2.91 -0.02 3.21 16 Total: -1.00 -70.93 354.58 0.38 -70.55 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.25 Total: 25.04 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 4.04 Total: -28.78 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -2.76 Total: -80.92 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -3.03 Total: -31.07 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.18 kcal Total: -70.93 0.38 -70.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294676545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.884 kcal (2) G-P(sol) polarization free energy of solvation -70.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds