Wall clock time and date at job start Tue Mar 31 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 108.82782 * 2 1 4 4 C 1.54255 * 108.75513 * 241.53402 * 2 1 3 5 5 S 1.83952 * 102.58144 * 263.78505 * 4 2 1 6 6 C 1.83765 * 94.74670 * 325.43945 * 5 4 2 7 7 C 1.52334 * 108.86820 * 118.52384 * 2 1 3 8 8 H 1.08998 * 108.87172 * 0.02562 * 7 2 1 9 9 N 1.46896 * 108.87110 * 241.49377 * 7 2 1 10 10 C 1.46901 * 110.99980 * 153.63736 * 9 7 2 11 11 H 1.09003 * 109.47169 * 34.25177 * 10 9 7 12 12 C 1.53003 * 109.47584 * 274.25656 * 10 9 7 13 13 C 1.50697 * 109.47204 * 174.35390 * 12 10 9 14 14 H 1.07998 * 119.99933 * 355.26265 * 13 12 10 15 15 C 1.37883 * 119.99579 * 175.26716 * 13 12 10 16 16 N 1.31514 * 119.99757 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00167 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46985 * 90.00432 * 17 15 13 19 19 H 1.48498 * 109.47443 * 210.00149 * 17 15 13 20 20 H 1.48503 * 109.47303 * 330.00575 * 17 15 13 21 21 C 1.50695 * 109.47201 * 154.25449 * 10 9 7 22 22 C 1.38231 * 120.00279 * 39.72547 * 21 10 9 23 23 C 1.38237 * 120.00438 * 179.79081 * 22 21 10 24 24 C 1.38235 * 119.99565 * 0.46252 * 23 22 21 25 25 C 1.38237 * 120.00391 * 359.77172 * 24 23 22 26 26 C 1.38237 * 119.99983 * 220.00313 * 21 10 9 27 27 H 1.08999 * 109.47190 * 301.47047 * 1 2 3 28 28 H 1.08997 * 109.47095 * 61.47665 * 1 2 3 29 29 H 1.09000 * 109.46929 * 181.47225 * 1 2 3 30 30 H 1.08995 * 110.78876 * 22.05961 * 4 2 1 31 31 H 1.09004 * 110.78330 * 145.51271 * 4 2 1 32 32 H 1.08997 * 110.80792 * 276.30321 * 6 5 4 33 33 H 1.09000 * 110.68701 * 152.89915 * 6 5 4 34 34 H 1.00899 * 111.00554 * 277.59873 * 9 7 2 35 35 H 1.09002 * 109.47196 * 54.34722 * 12 10 9 36 36 H 1.09005 * 109.46691 * 294.35625 * 12 10 9 37 37 H 0.96994 * 120.00329 * 179.97438 * 16 15 13 38 38 H 1.08008 * 119.99800 * 0.02562 * 22 21 10 39 39 H 1.07998 * 120.00254 * 180.25793 * 23 22 21 40 40 H 1.08001 * 120.00184 * 179.79296 * 24 23 22 41 41 H 1.07993 * 120.00371 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.00003 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0260 -0.6962 -1.2840 5 16 2.3389 -2.4163 -0.7120 6 6 2.9031 -1.9186 0.9646 7 6 2.0227 -0.6883 1.2665 8 1 1.1607 -1.0073 1.8525 9 7 2.8040 0.2726 2.0563 10 6 2.7742 -0.0718 3.4841 11 1 2.7482 -1.1558 3.5959 12 6 1.5281 0.5373 4.1299 13 6 1.4237 0.0705 5.5589 14 1 2.1270 -0.6534 5.9433 15 6 0.4301 0.5675 6.3756 16 7 0.3387 0.1598 7.6226 17 14 -0.7860 1.8199 5.7109 18 1 -1.9577 1.1139 5.1332 19 1 -1.2366 2.7061 6.8139 20 1 -0.1305 2.6355 4.6571 21 6 4.0068 0.4733 4.1582 22 6 4.4878 1.7226 3.8136 23 6 5.6160 2.2245 4.4351 24 6 6.2686 1.4731 5.3944 25 6 5.7905 0.2217 5.7356 26 6 4.6598 -0.2783 5.1172 27 1 -0.3633 0.5365 0.8765 28 1 -0.3633 0.4907 -0.9029 29 1 -0.3633 -1.0273 0.0264 30 1 1.2561 -0.6791 -2.0554 31 1 2.9457 -0.2348 -1.6436 32 1 3.9582 -1.6457 0.9529 33 1 2.7161 -2.7143 1.6858 34 1 3.7529 0.3318 1.7183 35 1 0.6421 0.2218 3.5788 36 1 1.6018 1.6246 4.1072 37 1 -0.3600 0.5096 8.1973 38 1 3.9799 2.3082 3.0614 39 1 5.9893 3.2023 4.1688 40 1 7.1520 1.8638 5.8776 41 1 6.3001 -0.3651 6.4853 42 1 4.2864 -1.2560 5.3835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295606503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:51 Heat of formation + Delta-G solvation = 17.259197 kcal Electronic energy + Delta-G solvation = -21441.440034 eV Core-core repulsion = 18511.785359 eV Total energy + Delta-G solvation = -2929.654675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -39.25923 -37.84214 -34.92713 -32.67125 -31.23021 -30.39581 -29.13967 -28.43004 -27.19156 -24.66416 -22.98767 -22.15214 -21.73963 -19.74688 -19.39915 -16.99909 -16.88426 -16.23503 -15.44675 -15.31180 -14.72938 -14.37347 -14.08118 -13.88308 -13.62567 -13.42947 -13.29856 -12.94765 -12.77872 -12.53409 -12.17524 -12.01532 -11.83219 -11.59977 -11.52116 -11.23408 -11.13847 -10.84466 -10.71202 -10.54948 -10.17587 -10.00128 -9.94110 -9.74799 -9.19763 -8.53959 -8.37950 -8.21027 -8.05615 -7.72482 -6.04059 -4.01506 1.84551 1.89545 1.93002 2.26820 3.30621 3.38761 3.43430 4.23238 4.37597 4.45803 4.47873 4.80245 5.00377 5.06682 5.08920 5.26142 5.34890 5.37817 5.44402 5.45935 5.52123 5.59378 5.61073 5.74206 5.84016 5.97329 6.04593 6.09910 6.11529 6.20288 6.33469 6.38807 6.54871 6.62436 6.90174 6.97955 7.03056 7.14843 7.22895 7.51974 7.55603 7.70763 7.81512 8.51607 8.99914 9.58508 11.09124 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.006320 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.838521 B = 4429.127082 C = 6016.420720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.096 0.904 4 C -0.061 4.061 5 S -0.307 6.307 6 C -0.091 4.091 7 C 0.088 3.912 8 H 0.100 0.900 9 N -0.677 5.677 10 C 0.135 3.865 11 H 0.048 0.952 12 C 0.007 3.993 13 C -0.516 4.516 14 H 0.073 0.927 15 C 0.070 3.930 16 N -0.902 5.902 17 Si 0.874 3.126 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.263 1.263 21 C -0.052 4.052 22 C -0.109 4.109 23 C -0.129 4.129 24 C -0.133 4.133 25 C -0.123 4.123 26 C -0.096 4.096 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.334 0.666 35 H 0.013 0.987 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.397 0.547 -14.240 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.114 0.886 4 C -0.209 4.209 5 S -0.081 6.081 6 C -0.241 4.241 7 C -0.024 4.024 8 H 0.118 0.882 9 N -0.308 5.308 10 C 0.027 3.973 11 H 0.066 0.934 12 C -0.031 4.031 13 C -0.554 4.554 14 H 0.091 0.909 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.187 1.187 21 C -0.053 4.053 22 C -0.127 4.127 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.142 4.142 26 C -0.115 4.115 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.153 0.847 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.649 -0.059 -14.564 16.010 hybrid contribution -0.003 0.946 0.599 1.120 sum 6.646 0.887 -13.964 15.491 Atomic orbital electron populations 1.21958 0.93842 1.02415 1.02072 1.21571 0.97246 1.01182 0.90861 0.88609 1.24304 1.04074 0.92202 1.00318 1.87869 1.87437 1.14874 1.17957 1.25058 1.02378 1.02018 0.94666 1.22309 0.96997 0.88060 0.95025 0.88228 1.60920 1.17366 1.49187 1.03289 1.20605 0.94613 0.97513 0.84584 0.93380 1.19558 0.91058 0.96789 0.95682 1.21073 1.14764 1.25672 0.93934 0.90855 1.24945 0.97337 0.96189 0.94661 1.69901 1.33871 1.44232 1.06138 0.86865 0.81820 0.82257 0.78921 1.20415 1.21537 1.18747 1.19822 0.94409 0.94454 0.96593 1.20968 0.96038 0.95389 1.00345 1.21014 0.96641 0.99327 0.97685 1.20979 1.00272 0.95164 0.98723 1.21021 0.97103 0.96201 0.99831 1.21010 0.94470 1.00210 0.95762 0.91695 0.92774 0.92101 0.87944 0.89582 0.89450 0.87783 0.84695 0.96877 0.95597 0.92822 0.85872 0.86932 0.87053 0.86793 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.58 37.16 0.32 -1.37 16 2 C -0.09 -1.02 2.99 -90.30 -0.27 -1.29 16 3 H 0.10 1.12 7.79 -51.93 -0.40 0.71 16 4 C -0.06 -0.62 6.96 37.81 0.26 -0.36 16 5 S -0.31 -3.87 23.26 -107.50 -2.50 -6.37 16 6 C -0.09 -1.14 6.64 37.82 0.25 -0.89 16 7 C 0.09 1.18 2.44 -67.39 -0.16 1.02 16 8 H 0.10 1.57 6.47 -51.93 -0.34 1.23 16 9 N -0.68 -9.93 5.19 -100.62 -0.52 -10.45 16 10 C 0.14 2.46 2.02 -68.86 -0.14 2.32 16 11 H 0.05 0.90 7.43 -51.93 -0.39 0.52 16 12 C 0.01 0.16 3.75 -27.88 -0.10 0.05 16 13 C -0.52 -14.03 9.09 -34.44 -0.31 -14.35 16 14 H 0.07 2.13 7.01 -52.49 -0.37 1.76 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 17 Si 0.87 21.62 27.57 -169.99 -4.69 16.93 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.26 -6.30 6.41 56.52 0.36 -5.94 16 21 C -0.05 -0.94 4.25 -104.63 -0.45 -1.39 16 22 C -0.11 -1.81 8.99 -39.58 -0.36 -2.17 16 23 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 24 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 25 C -0.12 -2.00 10.05 -39.58 -0.40 -2.39 16 26 C -0.10 -1.73 8.82 -39.58 -0.35 -2.08 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.94 7.75 -51.93 -0.40 0.53 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.03 7.59 -51.93 -0.39 0.64 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.33 4.40 7.36 -39.29 -0.29 4.12 16 35 H 0.01 0.30 7.07 -51.93 -0.37 -0.07 16 36 H 0.03 0.62 6.86 -51.93 -0.36 0.26 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.12 1.94 7.71 -52.48 -0.40 1.53 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.12 2.14 7.84 -52.49 -0.41 1.73 16 LS Contribution 344.73 15.07 5.20 5.20 Total: -1.00 -29.77 344.73 -11.01 -40.78 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.67 Total: 6.34 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -2.60 Total: -25.74 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.25 Total: -37.14 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.69 Total: 16.93 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.50 Total: -6.37 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.77 -11.01 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295606503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.038 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds