Wall clock time and date at job start Tue Mar 31 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 108.82782 * 2 1 4 4 C 1.54255 * 108.75513 * 241.53402 * 2 1 3 5 5 S 1.83952 * 102.58144 * 263.78505 * 4 2 1 6 6 C 1.83765 * 94.74670 * 325.43945 * 5 4 2 7 7 C 1.52334 * 108.86820 * 118.52384 * 2 1 3 8 8 H 1.08998 * 108.87172 * 0.02562 * 7 2 1 9 9 N 1.46896 * 108.87110 * 241.49377 * 7 2 1 10 10 C 1.46901 * 110.99980 * 153.63736 * 9 7 2 11 11 H 1.09003 * 109.47169 * 34.25177 * 10 9 7 12 12 C 1.53003 * 109.47584 * 274.25656 * 10 9 7 13 13 C 1.50697 * 109.47204 * 174.35390 * 12 10 9 14 14 H 1.07998 * 119.99933 * 355.26265 * 13 12 10 15 15 C 1.37883 * 119.99579 * 175.26716 * 13 12 10 16 16 N 1.31514 * 119.99757 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00167 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46985 * 90.00432 * 17 15 13 19 19 H 1.48498 * 109.47443 * 210.00149 * 17 15 13 20 20 H 1.48503 * 109.47303 * 330.00575 * 17 15 13 21 21 C 1.50695 * 109.47201 * 154.25449 * 10 9 7 22 22 C 1.38231 * 120.00279 * 39.72547 * 21 10 9 23 23 C 1.38237 * 120.00438 * 179.79081 * 22 21 10 24 24 C 1.38235 * 119.99565 * 0.46252 * 23 22 21 25 25 C 1.38237 * 120.00391 * 359.77172 * 24 23 22 26 26 C 1.38237 * 119.99983 * 220.00313 * 21 10 9 27 27 H 1.08999 * 109.47190 * 301.47047 * 1 2 3 28 28 H 1.08997 * 109.47095 * 61.47665 * 1 2 3 29 29 H 1.09000 * 109.46929 * 181.47225 * 1 2 3 30 30 H 1.08995 * 110.78876 * 22.05961 * 4 2 1 31 31 H 1.09004 * 110.78330 * 145.51271 * 4 2 1 32 32 H 1.08997 * 110.80792 * 276.30321 * 6 5 4 33 33 H 1.09000 * 110.68701 * 152.89915 * 6 5 4 34 34 H 1.00899 * 111.00554 * 277.59873 * 9 7 2 35 35 H 1.09002 * 109.47196 * 54.34722 * 12 10 9 36 36 H 1.09005 * 109.46691 * 294.35625 * 12 10 9 37 37 H 0.96994 * 120.00329 * 179.97438 * 16 15 13 38 38 H 1.08008 * 119.99800 * 0.02562 * 22 21 10 39 39 H 1.07998 * 120.00254 * 180.25793 * 23 22 21 40 40 H 1.08001 * 120.00184 * 179.79296 * 24 23 22 41 41 H 1.07993 * 120.00371 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.00003 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0260 -0.6962 -1.2840 5 16 2.3389 -2.4163 -0.7120 6 6 2.9031 -1.9186 0.9646 7 6 2.0227 -0.6883 1.2665 8 1 1.1607 -1.0073 1.8525 9 7 2.8040 0.2726 2.0563 10 6 2.7742 -0.0718 3.4841 11 1 2.7482 -1.1558 3.5959 12 6 1.5281 0.5373 4.1299 13 6 1.4237 0.0705 5.5589 14 1 2.1270 -0.6534 5.9433 15 6 0.4301 0.5675 6.3756 16 7 0.3387 0.1598 7.6226 17 14 -0.7860 1.8199 5.7109 18 1 -1.9577 1.1139 5.1332 19 1 -1.2366 2.7061 6.8139 20 1 -0.1305 2.6355 4.6571 21 6 4.0068 0.4733 4.1582 22 6 4.4878 1.7226 3.8136 23 6 5.6160 2.2245 4.4351 24 6 6.2686 1.4731 5.3944 25 6 5.7905 0.2217 5.7356 26 6 4.6598 -0.2783 5.1172 27 1 -0.3633 0.5365 0.8765 28 1 -0.3633 0.4907 -0.9029 29 1 -0.3633 -1.0273 0.0264 30 1 1.2561 -0.6791 -2.0554 31 1 2.9457 -0.2348 -1.6436 32 1 3.9582 -1.6457 0.9529 33 1 2.7161 -2.7143 1.6858 34 1 3.7529 0.3318 1.7183 35 1 0.6421 0.2218 3.5788 36 1 1.6018 1.6246 4.1072 37 1 -0.3600 0.5096 8.1973 38 1 3.9799 2.3082 3.0614 39 1 5.9893 3.2023 4.1688 40 1 7.1520 1.8638 5.8776 41 1 6.3001 -0.3651 6.4853 42 1 4.2864 -1.2560 5.3835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295606503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:51 Heat of formation + Delta-G solvation = 1.358278 kcal Electronic energy + Delta-G solvation = -21442.129549 eV Core-core repulsion = 18511.785359 eV Total energy + Delta-G solvation = -2930.344190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.55719 -38.96979 -36.28741 -34.61309 -32.54715 -31.65847 -30.75722 -29.70785 -28.09213 -26.19792 -24.31941 -23.56946 -23.07826 -20.96589 -20.73249 -18.99203 -18.01271 -17.47256 -16.67828 -16.52911 -16.20894 -15.85240 -15.44613 -15.04769 -14.95331 -14.63227 -14.49610 -14.45262 -14.11189 -14.08959 -13.50744 -13.26276 -13.16655 -12.91676 -12.79611 -12.51263 -12.36018 -12.18431 -11.86259 -11.84655 -11.79821 -11.71778 -11.49028 -11.25809 -10.90628 -10.72750 -9.66729 -9.46938 -9.37544 -8.73467 -8.25107 -6.26192 0.60594 0.64454 0.88196 1.33676 1.33757 1.36206 1.47548 2.37190 2.99123 3.11100 3.14156 3.44844 3.90309 3.94498 3.98243 4.03901 4.11251 4.15739 4.28041 4.39729 4.46142 4.51785 4.65256 4.70797 4.76612 4.78833 4.81141 4.85832 4.90749 5.11563 5.15130 5.20283 5.26517 5.34264 5.37479 5.47598 5.63851 5.70968 5.72517 5.79688 6.12123 6.26954 6.35290 6.51716 6.80701 7.36947 8.91218 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.006320 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.838521 B = 4429.127082 C = 6016.420720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.103 0.897 4 C -0.045 4.045 5 S -0.336 6.336 6 C -0.084 4.084 7 C 0.090 3.910 8 H 0.072 0.928 9 N -0.667 5.667 10 C 0.150 3.850 11 H 0.032 0.968 12 C 0.016 3.984 13 C -0.512 4.512 14 H 0.040 0.960 15 C 0.008 3.992 16 N -0.951 5.951 17 Si 0.937 3.063 18 H -0.270 1.270 19 H -0.288 1.288 20 H -0.247 1.247 21 C -0.073 4.073 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.131 4.131 25 C -0.133 4.133 26 C -0.124 4.124 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.347 0.653 35 H 0.012 0.988 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 2.743 -16.575 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.121 0.879 4 C -0.192 4.192 5 S -0.111 6.111 6 C -0.234 4.234 7 C -0.022 4.022 8 H 0.090 0.910 9 N -0.298 5.298 10 C 0.040 3.960 11 H 0.050 0.950 12 C -0.022 4.022 13 C -0.551 4.551 14 H 0.059 0.941 15 C -0.188 4.188 16 N -0.592 5.592 17 Si 0.762 3.238 18 H -0.195 1.195 19 H -0.214 1.214 20 H -0.171 1.171 21 C -0.073 4.073 22 C -0.134 4.134 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.142 4.142 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.138 0.862 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.168 0.832 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.151 0.849 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.562 2.131 -16.932 18.666 hybrid contribution -0.201 0.207 1.349 1.379 sum 7.362 2.337 -15.583 17.393 Atomic orbital electron populations 1.21940 0.93853 1.01958 1.02347 1.21496 0.97151 1.01302 0.90391 0.87891 1.24379 1.05482 0.89631 0.99751 1.88005 1.87623 1.17570 1.17858 1.24926 1.02678 1.01235 0.94562 1.22321 0.95948 0.88395 0.95503 0.90982 1.60796 1.18371 1.49346 1.01331 1.20180 0.93051 0.96130 0.86600 0.95039 1.19394 0.93298 0.96262 0.93285 1.21382 1.13345 1.24262 0.96106 0.94145 1.25828 0.99571 0.98533 0.94870 1.70053 1.35155 1.46266 1.07728 0.85848 0.79560 0.79861 0.78562 1.19525 1.21447 1.17085 1.19859 0.94654 0.95555 0.97270 1.21147 0.96757 0.94706 1.00831 1.21427 0.95678 1.00509 0.96780 1.21390 1.00968 0.94288 0.98260 1.21301 0.96543 0.97241 0.99968 1.21072 0.96023 1.00090 0.97045 0.93617 0.90389 0.92841 0.86150 0.87708 0.88464 0.89019 0.83227 0.97010 0.96203 0.92849 0.84885 0.83645 0.83787 0.85182 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.58 71.98 0.62 -2.46 16 2 C -0.08 -1.74 2.99 -10.59 -0.03 -1.78 16 3 H 0.10 2.08 7.79 -2.39 -0.02 2.06 16 4 C -0.04 -0.78 6.96 72.41 0.50 -0.28 16 5 S -0.34 -8.05 23.26 -56.49 -1.31 -9.36 16 6 C -0.08 -2.08 6.64 72.41 0.48 -1.60 16 7 C 0.09 2.38 2.44 45.13 0.11 2.49 16 8 H 0.07 2.32 6.47 -2.39 -0.02 2.30 16 9 N -0.67 -18.99 5.19 -472.24 -2.45 -21.44 16 10 C 0.15 5.55 2.02 44.17 0.09 5.64 16 11 H 0.03 1.26 7.43 -2.39 -0.02 1.24 16 12 C 0.02 0.72 3.75 29.85 0.11 0.83 16 13 C -0.51 -28.85 9.09 25.60 0.23 -28.62 16 14 H 0.04 2.49 7.01 -2.91 -0.02 2.47 16 15 C 0.01 0.49 5.47 84.66 0.46 0.96 16 16 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 17 Si 0.94 44.86 27.57 68.60 1.89 46.76 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.25 -11.11 6.41 99.48 0.64 -10.47 16 21 C -0.07 -2.64 4.25 -19.87 -0.08 -2.73 16 22 C -0.12 -3.66 8.99 22.27 0.20 -3.46 16 23 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16 24 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 25 C -0.13 -4.21 10.05 22.27 0.22 -3.98 16 26 C -0.12 -4.61 8.82 22.27 0.20 -4.41 16 27 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.12 1.74 7.75 -2.39 -0.02 1.73 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 2.20 7.59 -2.39 -0.02 2.19 16 33 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.35 8.59 7.36 -89.69 -0.66 7.93 16 35 H 0.01 0.54 7.07 -2.39 -0.02 0.52 16 36 H 0.02 0.93 6.86 -2.38 -0.02 0.92 16 37 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.13 3.86 7.71 -2.91 -0.02 3.84 16 39 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.10 3.92 7.84 -2.91 -0.02 3.90 16 Total: -1.00 -66.08 344.73 2.25 -63.83 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.27 Total: 25.69 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 3.56 Total: -46.01 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -2.15 Total: -80.90 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.89 Total: 46.76 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.31 Total: -9.36 kcal Total: -66.08 2.25 -63.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295606503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.183 kcal (2) G-P(sol) polarization free energy of solvation -66.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds