Wall clock time and date at job start Tue Mar 31 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 108.70972 * 2 1 4 4 C 1.54265 * 108.87074 * 241.53906 * 2 1 3 5 5 S 1.83962 * 102.58112 * 214.65593 * 4 2 1 6 6 C 1.83957 * 94.80700 * 34.48869 * 5 4 2 7 7 C 1.52332 * 108.86722 * 118.46155 * 2 1 3 8 8 H 1.08999 * 108.86941 * 241.49315 * 7 2 1 9 9 N 1.46898 * 108.86796 * 359.97438 * 7 2 1 10 10 C 1.46902 * 110.99905 * 192.37412 * 9 7 2 11 11 H 1.08996 * 109.47164 * 352.61529 * 10 9 7 12 12 C 1.53004 * 109.46612 * 112.61378 * 10 9 7 13 13 C 1.50696 * 109.47143 * 294.19994 * 12 10 9 14 14 H 1.08005 * 119.99971 * 5.23014 * 13 12 10 15 15 C 1.37875 * 120.00206 * 184.95775 * 13 12 10 16 16 N 1.31515 * 119.99867 * 0.27358 * 15 13 12 17 17 Si 1.86798 * 120.00314 * 180.27589 * 15 13 12 18 18 H 1.48501 * 109.47149 * 60.00071 * 17 15 13 19 19 H 1.48501 * 109.47380 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47180 * 300.00059 * 17 15 13 21 21 C 1.50694 * 109.47168 * 232.61086 * 10 9 7 22 22 C 1.38236 * 120.00382 * 319.72677 * 21 10 9 23 23 C 1.38235 * 120.00384 * 179.78649 * 22 21 10 24 24 C 1.38235 * 119.99821 * 0.46699 * 23 22 21 25 25 C 1.38235 * 119.99888 * 359.76880 * 24 23 22 26 26 C 1.38231 * 120.00005 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47611 * 307.56237 * 1 2 3 28 28 H 1.09004 * 109.46749 * 67.56067 * 1 2 3 29 29 H 1.09000 * 109.47512 * 187.55580 * 1 2 3 30 30 H 1.09005 * 110.78117 * 332.92221 * 4 2 1 31 31 H 1.08990 * 110.78836 * 96.18916 * 4 2 1 32 32 H 1.08998 * 110.78816 * 207.23375 * 6 5 4 33 33 H 1.09007 * 110.78502 * 83.78204 * 6 5 4 34 34 H 1.00894 * 111.00400 * 316.33148 * 9 7 2 35 35 H 1.09004 * 109.46808 * 174.20057 * 12 10 9 36 36 H 1.08994 * 109.47302 * 54.20596 * 12 10 9 37 37 H 0.97004 * 120.00501 * 179.97438 * 16 15 13 38 38 H 1.08004 * 119.99626 * 0.02562 * 22 21 10 39 39 H 1.07998 * 119.99956 * 180.25625 * 23 22 21 40 40 H 1.08002 * 120.00206 * 179.78458 * 24 23 22 41 41 H 1.08004 * 120.00286 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.00148 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8796 1.0324 0.0000 4 6 2.0289 -0.6957 -1.2833 5 16 3.5560 -1.5463 -0.7102 6 6 2.9047 -1.9170 0.9698 7 6 2.0226 -0.6870 1.2673 8 1 2.6024 0.0267 1.8525 9 7 0.8608 -1.1149 2.0579 10 6 1.2645 -1.5149 3.4126 11 1 2.3523 -1.5264 3.4790 12 6 0.7021 -0.5176 4.4276 13 6 1.3465 0.8286 4.2191 14 1 2.0196 0.9823 3.3886 15 6 1.0724 1.8656 5.0854 16 7 0.2528 1.6785 6.0967 17 14 1.8651 3.5365 4.8225 18 1 1.4724 4.0670 3.4923 19 1 1.4113 4.4721 5.8827 20 1 3.3424 3.3987 4.8840 21 6 0.7283 -2.8913 3.7107 22 6 -0.5459 -3.2399 3.3034 23 6 -1.0361 -4.5040 3.5730 24 6 -0.2558 -5.4163 4.2583 25 6 1.0166 -5.0661 4.6698 26 6 1.5084 -3.8034 4.3965 27 1 -0.3634 0.6265 0.8146 28 1 -0.3633 0.3923 -0.9499 29 1 -0.3634 -1.0187 0.1351 30 1 1.2953 -1.4178 -1.6420 31 1 2.2580 0.0374 -2.0566 32 1 3.7177 -1.9936 1.6917 33 1 2.3070 -2.8285 0.9605 34 1 0.1581 -0.3915 2.0888 35 1 0.9133 -0.8691 5.4375 36 1 -0.3757 -0.4295 4.2915 37 1 0.0602 2.4079 6.7064 38 1 -1.1570 -2.5259 2.7713 39 1 -2.0301 -4.7777 3.2512 40 1 -0.6400 -6.4028 4.4719 41 1 1.6265 -5.7790 5.2048 42 1 2.5023 -3.5297 4.7183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295606505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:00 Heat of formation + Delta-G solvation = 21.658197 kcal Electronic energy + Delta-G solvation = -21643.867798 eV Core-core repulsion = 18714.403878 eV Total energy + Delta-G solvation = -2929.463920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.19483 -37.88567 -34.74731 -32.56710 -30.78980 -30.43713 -29.44820 -28.28721 -26.49883 -24.72929 -23.14608 -22.16782 -21.86081 -19.75279 -18.89249 -16.98544 -16.41453 -16.10751 -15.80897 -14.94895 -14.79762 -14.64338 -14.21901 -13.90338 -13.63657 -13.07866 -12.89262 -12.78297 -12.67939 -12.12267 -12.01294 -11.96545 -11.78139 -11.49859 -11.17897 -11.04878 -10.87586 -10.79393 -10.67836 -10.51127 -10.46190 -10.27941 -9.83013 -9.79364 -9.18588 -8.53489 -8.43901 -8.12059 -7.73771 -7.58656 -6.13636 -4.18841 1.85826 1.90063 2.05892 2.45775 3.22876 3.29023 3.30588 4.26753 4.34594 4.66056 4.67839 4.92482 5.13680 5.22619 5.31569 5.33417 5.38435 5.44213 5.49459 5.59762 5.68115 5.74815 5.81321 5.93123 5.99453 6.03827 6.06658 6.13361 6.22117 6.37691 6.45884 6.50101 6.56193 6.66680 6.91463 6.95415 7.15198 7.31518 7.49054 7.51670 7.81966 7.86644 8.04422 8.20466 8.87533 9.46912 10.96621 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.009101 B = 0.007690 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.955534 B = 3640.044404 C = 5836.947343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.051 4.051 5 S -0.322 6.322 6 C -0.045 4.045 7 C 0.089 3.911 8 H 0.063 0.937 9 N -0.673 5.673 10 C 0.118 3.882 11 H 0.064 0.936 12 C 0.015 3.985 13 C -0.529 4.529 14 H 0.055 0.945 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.888 3.112 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.044 4.044 22 C -0.092 4.092 23 C -0.128 4.128 24 C -0.139 4.139 25 C -0.125 4.125 26 C -0.124 4.124 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.356 0.644 35 H 0.026 0.974 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 -8.312 -9.683 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.200 4.200 5 S -0.096 6.096 6 C -0.193 4.193 7 C -0.023 4.023 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.009 3.991 11 H 0.082 0.918 12 C -0.023 4.023 13 C -0.567 4.567 14 H 0.073 0.927 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.716 3.284 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.045 4.045 22 C -0.111 4.111 23 C -0.146 4.146 24 C -0.157 4.157 25 C -0.143 4.143 26 C -0.142 4.142 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.180 0.820 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.007 -9.075 -10.314 13.775 hybrid contribution -0.393 2.045 1.043 2.329 sum 0.614 -7.030 -9.271 11.651 Atomic orbital electron populations 1.21889 0.93750 1.03547 1.01131 1.21669 0.97664 1.00023 0.91918 0.90281 1.24191 0.95147 1.00794 0.99832 1.87799 1.26116 1.76727 1.18950 1.24290 1.00685 1.01754 0.92585 1.22022 0.92185 0.93765 0.94304 0.91861 1.61069 1.11267 1.45086 1.13419 1.20726 0.98295 0.90834 0.89257 0.91819 1.19574 0.96281 0.92222 0.94209 1.21128 1.27872 0.95486 1.12261 0.92683 1.24972 0.94993 0.98830 0.95051 1.69948 1.35015 1.32559 1.15093 0.86720 0.79847 0.83954 0.77898 1.20189 1.21204 1.20214 1.20166 0.93905 0.95487 0.94973 1.20927 0.95517 0.95717 0.98902 1.21087 0.99369 0.94354 0.99803 1.20956 0.94967 0.99215 1.00581 1.20978 0.96031 0.96516 1.00818 1.21018 0.99937 0.93511 0.99773 0.91646 0.93302 0.90525 0.89280 0.88428 0.88599 0.88401 0.82032 0.95531 0.96224 0.92763 0.86084 0.86969 0.87141 0.86975 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.68 37.16 0.29 -1.51 16 2 C -0.09 -1.24 3.17 -90.30 -0.29 -1.53 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.05 -0.62 6.91 37.82 0.26 -0.36 16 5 S -0.32 -4.63 23.27 -107.50 -2.50 -7.13 16 6 C -0.04 -0.66 6.20 37.82 0.23 -0.42 16 7 C 0.09 1.38 2.62 -67.40 -0.18 1.21 16 8 H 0.06 1.15 6.21 -51.93 -0.32 0.82 16 9 N -0.67 -11.04 3.96 -100.62 -0.40 -11.44 16 10 C 0.12 2.22 1.92 -68.86 -0.13 2.09 16 11 H 0.06 1.23 6.82 -51.93 -0.35 0.88 16 12 C 0.01 0.35 4.23 -27.88 -0.12 0.23 16 13 C -0.53 -13.53 8.67 -34.44 -0.30 -13.83 16 14 H 0.06 1.36 5.78 -52.48 -0.30 1.06 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 17 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 C -0.04 -0.78 4.95 -104.63 -0.52 -1.29 16 22 C -0.09 -1.52 9.32 -39.58 -0.37 -1.89 16 23 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 24 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 25 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.12 -2.02 9.67 -39.58 -0.38 -2.41 16 27 H 0.06 0.90 6.84 -51.93 -0.36 0.55 16 28 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.08 0.98 7.38 -51.93 -0.38 0.59 16 30 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.10 1.41 7.98 -51.93 -0.41 1.00 16 33 H 0.10 1.49 8.05 -51.93 -0.42 1.07 16 34 H 0.36 6.21 5.17 -39.30 -0.20 6.01 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.02 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.12 1.95 7.73 -52.48 -0.41 1.54 16 39 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.11 1.77 8.04 -52.48 -0.42 1.35 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -27.45 343.28 -11.30 -38.76 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.50 Total: 8.57 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -2.79 Total: -24.92 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.34 Total: -36.10 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -2.50 Total: -7.13 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.45 -11.30 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295606505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.414 kcal (2) G-P(sol) polarization free energy of solvation -27.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds