Wall clock time and date at job start Tue Mar 31 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 108.70972 * 2 1 4 4 C 1.54265 * 108.87074 * 241.53906 * 2 1 3 5 5 S 1.83962 * 102.58112 * 214.65593 * 4 2 1 6 6 C 1.83957 * 94.80700 * 34.48869 * 5 4 2 7 7 C 1.52332 * 108.86722 * 118.46155 * 2 1 3 8 8 H 1.08999 * 108.86941 * 241.49315 * 7 2 1 9 9 N 1.46898 * 108.86796 * 359.97438 * 7 2 1 10 10 C 1.46902 * 110.99905 * 192.37412 * 9 7 2 11 11 H 1.08996 * 109.47164 * 352.61529 * 10 9 7 12 12 C 1.53004 * 109.46612 * 112.61378 * 10 9 7 13 13 C 1.50696 * 109.47143 * 294.19994 * 12 10 9 14 14 H 1.08005 * 119.99971 * 5.23014 * 13 12 10 15 15 C 1.37875 * 120.00206 * 184.95775 * 13 12 10 16 16 N 1.31515 * 119.99867 * 0.27358 * 15 13 12 17 17 Si 1.86798 * 120.00314 * 180.27589 * 15 13 12 18 18 H 1.48501 * 109.47149 * 60.00071 * 17 15 13 19 19 H 1.48501 * 109.47380 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47180 * 300.00059 * 17 15 13 21 21 C 1.50694 * 109.47168 * 232.61086 * 10 9 7 22 22 C 1.38236 * 120.00382 * 319.72677 * 21 10 9 23 23 C 1.38235 * 120.00384 * 179.78649 * 22 21 10 24 24 C 1.38235 * 119.99821 * 0.46699 * 23 22 21 25 25 C 1.38235 * 119.99888 * 359.76880 * 24 23 22 26 26 C 1.38231 * 120.00005 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47611 * 307.56237 * 1 2 3 28 28 H 1.09004 * 109.46749 * 67.56067 * 1 2 3 29 29 H 1.09000 * 109.47512 * 187.55580 * 1 2 3 30 30 H 1.09005 * 110.78117 * 332.92221 * 4 2 1 31 31 H 1.08990 * 110.78836 * 96.18916 * 4 2 1 32 32 H 1.08998 * 110.78816 * 207.23375 * 6 5 4 33 33 H 1.09007 * 110.78502 * 83.78204 * 6 5 4 34 34 H 1.00894 * 111.00400 * 316.33148 * 9 7 2 35 35 H 1.09004 * 109.46808 * 174.20057 * 12 10 9 36 36 H 1.08994 * 109.47302 * 54.20596 * 12 10 9 37 37 H 0.97004 * 120.00501 * 179.97438 * 16 15 13 38 38 H 1.08004 * 119.99626 * 0.02562 * 22 21 10 39 39 H 1.07998 * 119.99956 * 180.25625 * 23 22 21 40 40 H 1.08002 * 120.00206 * 179.78458 * 24 23 22 41 41 H 1.08004 * 120.00286 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.00148 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8796 1.0324 0.0000 4 6 2.0289 -0.6957 -1.2833 5 16 3.5560 -1.5463 -0.7102 6 6 2.9047 -1.9170 0.9698 7 6 2.0226 -0.6870 1.2673 8 1 2.6024 0.0267 1.8525 9 7 0.8608 -1.1149 2.0579 10 6 1.2645 -1.5149 3.4126 11 1 2.3523 -1.5264 3.4790 12 6 0.7021 -0.5176 4.4276 13 6 1.3465 0.8286 4.2191 14 1 2.0196 0.9823 3.3886 15 6 1.0724 1.8656 5.0854 16 7 0.2528 1.6785 6.0967 17 14 1.8651 3.5365 4.8225 18 1 1.4724 4.0670 3.4923 19 1 1.4113 4.4721 5.8827 20 1 3.3424 3.3987 4.8840 21 6 0.7283 -2.8913 3.7107 22 6 -0.5459 -3.2399 3.3034 23 6 -1.0361 -4.5040 3.5730 24 6 -0.2558 -5.4163 4.2583 25 6 1.0166 -5.0661 4.6698 26 6 1.5084 -3.8034 4.3965 27 1 -0.3634 0.6265 0.8146 28 1 -0.3633 0.3923 -0.9499 29 1 -0.3634 -1.0187 0.1351 30 1 1.2953 -1.4178 -1.6420 31 1 2.2580 0.0374 -2.0566 32 1 3.7177 -1.9936 1.6917 33 1 2.3070 -2.8285 0.9605 34 1 0.1581 -0.3915 2.0888 35 1 0.9133 -0.8691 5.4375 36 1 -0.3757 -0.4295 4.2915 37 1 0.0602 2.4079 6.7064 38 1 -1.1570 -2.5259 2.7713 39 1 -2.0301 -4.7777 3.2512 40 1 -0.6400 -6.4028 4.4719 41 1 1.6265 -5.7790 5.2048 42 1 2.5023 -3.5297 4.7183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295606505.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:56 Heat of formation + Delta-G solvation = 9.236880 kcal Electronic energy + Delta-G solvation = -21644.406427 eV Core-core repulsion = 18714.403878 eV Total energy + Delta-G solvation = -2930.002548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -40.50476 -39.09600 -36.24430 -34.45718 -32.01421 -31.63426 -30.77802 -29.88126 -27.73644 -26.30002 -24.43813 -23.66613 -23.15778 -21.16288 -20.11595 -18.67612 -17.81536 -17.43168 -17.06561 -16.62937 -16.20382 -15.91026 -15.58309 -15.11727 -14.80165 -14.43559 -14.35107 -14.15612 -14.05949 -13.57334 -13.49330 -13.16348 -13.02467 -12.88762 -12.77451 -12.62800 -12.40154 -12.18094 -12.01498 -11.90535 -11.86851 -11.61935 -11.46080 -11.10252 -10.89042 -10.61351 -9.65647 -9.40988 -9.18852 -8.73995 -8.22310 -6.33598 0.63720 0.68839 0.94037 1.34340 1.36627 1.37752 1.45219 2.36105 3.04596 3.10751 3.34574 3.53741 3.84964 3.96493 4.12123 4.15903 4.26395 4.28183 4.36562 4.43609 4.50339 4.55638 4.67518 4.72682 4.76429 4.81261 4.82123 4.89663 4.97135 5.14014 5.21074 5.24530 5.31924 5.42699 5.47141 5.50783 5.71292 5.75408 5.80076 5.88216 6.15268 6.28825 6.34012 6.56256 6.82104 7.36140 8.88360 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.009101 B = 0.007690 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.955534 B = 3640.044404 C = 5836.947343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.037 4.037 5 S -0.341 6.341 6 C -0.036 4.036 7 C 0.090 3.910 8 H 0.034 0.966 9 N -0.657 5.657 10 C 0.136 3.864 11 H 0.052 0.948 12 C 0.027 3.973 13 C -0.533 4.533 14 H 0.062 0.938 15 C 0.010 3.990 16 N -0.928 5.928 17 Si 0.952 3.048 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.068 4.068 22 C -0.107 4.107 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.126 4.126 26 C -0.141 4.141 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.350 0.650 35 H -0.011 1.011 36 H -0.003 1.003 37 H 0.262 0.738 38 H 0.117 0.883 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -9.172 -11.419 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.095 0.905 4 C -0.185 4.185 5 S -0.114 6.114 6 C -0.185 4.185 7 C -0.022 4.022 8 H 0.052 0.948 9 N -0.291 5.291 10 C 0.026 3.974 11 H 0.070 0.930 12 C -0.011 4.011 13 C -0.571 4.571 14 H 0.080 0.920 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.777 3.223 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.069 4.069 22 C -0.125 4.125 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.144 4.144 26 C -0.160 4.160 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.173 0.827 35 H 0.007 0.993 36 H 0.016 0.984 37 H 0.071 0.929 38 H 0.135 0.865 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.823 -9.943 -12.072 15.661 hybrid contribution -0.352 2.241 1.594 2.773 sum 0.470 -7.702 -10.478 13.012 Atomic orbital electron populations 1.21815 0.92830 1.03169 1.01814 1.21628 0.98340 0.99702 0.91494 0.90478 1.24265 0.93809 1.01126 0.99312 1.87874 1.27943 1.77223 1.18406 1.24113 1.00225 1.01047 0.93082 1.22059 0.91510 0.93656 0.94993 0.94847 1.61169 1.11344 1.44650 1.11969 1.20363 0.97192 0.90837 0.88990 0.92975 1.19388 0.94956 0.93064 0.93677 1.21495 1.27294 0.96259 1.12003 0.92037 1.25806 0.95574 1.02632 0.94868 1.70086 1.36784 1.33641 1.16230 0.85702 0.78881 0.79543 0.78176 1.18910 1.21172 1.19810 1.20082 0.95001 0.94962 0.96875 1.21009 0.95125 0.96854 0.99505 1.21415 1.00607 0.93471 0.99214 1.21384 0.94386 1.00435 0.99044 1.21315 0.96747 0.96005 1.00338 1.21173 1.00131 0.94535 1.00143 0.93407 0.90745 0.90785 0.87866 0.86194 0.89220 0.88693 0.82710 0.99304 0.98427 0.92864 0.86491 0.84333 0.83787 0.84317 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 7.68 71.98 0.55 -2.68 16 2 C -0.09 -2.34 3.17 -10.59 -0.03 -2.37 16 3 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.04 -0.81 6.91 72.41 0.50 -0.31 16 5 S -0.34 -9.37 23.27 -56.49 -1.31 -10.68 16 6 C -0.04 -1.06 6.20 72.41 0.45 -0.61 16 7 C 0.09 2.81 2.62 45.12 0.12 2.93 16 8 H 0.03 1.25 6.21 -2.39 -0.01 1.24 16 9 N -0.66 -22.12 3.96 -472.26 -1.87 -24.00 16 10 C 0.14 5.34 1.92 44.17 0.08 5.42 16 11 H 0.05 2.13 6.82 -2.39 -0.02 2.12 16 12 C 0.03 1.35 4.23 29.85 0.13 1.48 16 13 C -0.53 -28.15 8.67 25.60 0.22 -27.93 16 14 H 0.06 3.12 5.78 -2.91 -0.02 3.10 16 15 C 0.01 0.55 5.46 84.65 0.46 1.01 16 16 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 17 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 18 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 C -0.07 -2.45 4.95 -19.87 -0.10 -2.55 16 22 C -0.11 -3.50 9.32 22.27 0.21 -3.29 16 23 C -0.13 -3.53 10.05 22.27 0.22 -3.30 16 24 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 25 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 26 C -0.14 -4.64 9.67 22.27 0.22 -4.43 16 27 H 0.05 1.30 6.84 -2.39 -0.02 1.28 16 28 H 0.07 1.38 8.12 -2.38 -0.02 1.36 16 29 H 0.07 1.79 7.38 -2.39 -0.02 1.77 16 30 H 0.10 2.01 7.86 -2.38 -0.02 1.99 16 31 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.72 7.98 -2.39 -0.02 2.70 16 33 H 0.09 2.86 8.05 -2.38 -0.02 2.84 16 34 H 0.35 12.61 5.17 -89.70 -0.46 12.14 16 35 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 36 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 37 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 38 H 0.12 3.83 7.73 -2.91 -0.02 3.80 16 39 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 41 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 42 H 0.11 3.62 8.04 -2.91 -0.02 3.59 16 Total: -1.00 -60.71 343.28 3.14 -57.58 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.53 Total: 29.64 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 3.48 Total: -43.02 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -1.59 Total: -78.50 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -9.37 SS G_CDS: -1.31 Total: -10.68 kcal Total: -60.71 3.14 -57.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295606505.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.813 kcal (2) G-P(sol) polarization free energy of solvation -60.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds