Wall clock time and date at job start Tue Mar 31 2020 06:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08997 * 108.83136 * 2 1 4 4 C 1.54257 * 108.75874 * 241.53115 * 2 1 3 5 5 S 1.83947 * 102.58330 * 263.79138 * 4 2 1 6 6 C 1.83950 * 94.80978 * 325.50249 * 5 4 2 7 7 C 1.52341 * 108.86907 * 118.52983 * 2 1 3 8 8 H 1.09007 * 108.86338 * 359.97438 * 7 2 1 9 9 N 1.46898 * 108.86869 * 241.49710 * 7 2 1 10 10 C 1.46899 * 111.00144 * 154.99861 * 9 7 2 11 11 H 1.09001 * 109.47026 * 34.99195 * 10 9 7 12 12 C 1.52999 * 109.47495 * 154.99975 * 10 9 7 13 13 C 1.50699 * 109.46768 * 294.99979 * 12 10 9 14 14 H 1.08007 * 120.00346 * 0.02562 * 13 12 10 15 15 C 1.37880 * 120.00149 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00234 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99663 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47305 * 89.99654 * 17 15 13 19 19 H 1.48498 * 109.46913 * 209.99456 * 17 15 13 20 20 H 1.48502 * 109.47276 * 329.99632 * 17 15 13 21 21 C 1.50706 * 109.47010 * 275.00042 * 10 9 7 22 22 C 1.38234 * 120.00196 * 140.00087 * 21 10 9 23 23 C 1.38235 * 119.99814 * 179.97438 * 22 21 10 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38243 * 120.00076 * 0.02562 * 24 23 22 26 26 C 1.38235 * 119.99598 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47434 * 301.47342 * 1 2 3 28 28 H 1.09007 * 109.47006 * 61.47217 * 1 2 3 29 29 H 1.08999 * 109.47574 * 181.46938 * 1 2 3 30 30 H 1.09000 * 110.78524 * 22.06621 * 4 2 1 31 31 H 1.09002 * 110.78962 * 145.32678 * 4 2 1 32 32 H 1.09001 * 110.79116 * 276.22517 * 6 5 4 33 33 H 1.09000 * 110.79202 * 152.76742 * 6 5 4 34 34 H 1.00904 * 111.00388 * 31.04311 * 9 7 2 35 35 H 1.09006 * 109.47087 * 54.99800 * 12 10 9 36 36 H 1.08993 * 109.47597 * 174.99899 * 12 10 9 37 37 H 0.97005 * 119.99792 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.99516 * 0.24808 * 22 21 10 39 39 H 1.08000 * 119.99318 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00391 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.00221 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.99789 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8817 1.0316 0.0000 4 6 2.0260 -0.6963 -1.2840 5 16 2.3387 -2.4163 -0.7119 6 6 2.9017 -1.9203 0.9676 7 6 2.0226 -0.6885 1.2665 8 1 1.1605 -1.0067 1.8528 9 7 2.8039 0.2725 2.0564 10 6 2.8008 -0.0903 3.4799 11 1 2.8037 -1.1759 3.5782 12 6 4.0462 0.4864 4.1560 13 6 5.2773 -0.1656 3.5811 14 1 5.1810 -0.9160 2.8103 15 6 6.5266 0.1965 4.0384 16 7 7.6009 -0.3729 3.5370 17 14 6.6932 1.4949 5.3711 18 1 6.6675 0.8417 6.7045 19 1 7.9784 2.2186 5.1991 20 1 5.5661 2.4564 5.2691 21 6 1.5666 0.4703 4.1384 22 6 0.8817 -0.2803 5.0757 23 6 -0.2500 0.2342 5.6801 24 6 -0.6966 1.4994 5.3477 25 6 -0.0117 2.2501 4.4104 26 6 1.1200 1.7356 3.8060 27 1 -0.3634 0.5365 0.8764 28 1 -0.3633 0.4908 -0.9030 29 1 -0.3634 -1.0273 0.0264 30 1 1.2561 -0.6791 -2.0554 31 1 2.9439 -0.2328 -1.6455 32 1 3.9573 -1.6488 0.9573 33 1 2.7126 -2.7149 1.6894 34 1 2.4632 1.2127 1.9221 35 1 4.0894 1.5616 3.9815 36 1 4.0000 0.2939 5.2278 37 1 8.4798 -0.1183 3.8591 38 1 1.2334 -1.2669 5.3389 39 1 -0.7853 -0.3525 6.4120 40 1 -1.5806 1.9016 5.8202 41 1 -0.3609 3.2385 4.1504 42 1 1.6549 2.3219 3.0734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295606508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:10 Heat of formation + Delta-G solvation = 21.401694 kcal Electronic energy + Delta-G solvation = -21554.654592 eV Core-core repulsion = 18625.179549 eV Total energy + Delta-G solvation = -2929.475043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.57734 -37.77063 -35.00202 -32.48577 -31.09659 -30.76233 -29.35134 -28.49017 -27.09345 -24.82495 -22.86431 -22.32497 -21.73929 -19.84096 -19.43457 -17.29778 -16.53481 -16.40078 -15.57797 -15.04799 -14.68708 -14.61062 -14.40700 -13.96590 -13.61410 -13.31386 -13.24157 -13.03910 -12.80927 -12.53768 -12.36749 -11.93496 -11.79571 -11.58639 -11.38894 -11.18575 -11.12373 -10.92152 -10.82200 -10.72452 -10.31794 -10.13960 -9.69760 -9.69575 -9.10633 -8.78688 -8.46191 -8.42247 -7.90412 -7.49182 -5.94782 -3.89623 1.52797 1.54050 2.11754 2.52388 3.33704 3.41949 3.44886 3.94510 4.47125 4.51374 4.59106 4.81460 4.96174 5.03228 5.04456 5.12998 5.27768 5.30207 5.40116 5.48753 5.51232 5.54197 5.64317 5.66389 5.70557 5.89926 5.92852 5.93361 5.97623 6.14653 6.16424 6.23340 6.38382 6.53548 6.61348 6.61998 6.79283 7.07851 7.15459 7.21364 7.64843 7.79644 7.91249 8.65371 9.14886 9.67763 11.18689 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010041 B = 0.007215 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.988371 B = 3879.891874 C = 6009.925002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.086 0.914 4 C -0.055 4.055 5 S -0.319 6.319 6 C -0.045 4.045 7 C 0.091 3.909 8 H 0.052 0.948 9 N -0.652 5.652 10 C 0.138 3.862 11 H 0.081 0.919 12 C 0.005 3.995 13 C -0.492 4.492 14 H 0.079 0.921 15 C 0.064 3.936 16 N -0.905 5.905 17 Si 0.871 3.129 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.268 1.268 21 C -0.096 4.096 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.134 4.134 25 C -0.119 4.119 26 C -0.121 4.121 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.334 0.666 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.260 0.740 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.352 2.677 -3.168 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.105 0.895 4 C -0.203 4.203 5 S -0.093 6.093 6 C -0.193 4.193 7 C -0.021 4.021 8 H 0.070 0.930 9 N -0.284 5.284 10 C 0.028 3.972 11 H 0.099 0.901 12 C -0.033 4.033 13 C -0.530 4.530 14 H 0.097 0.903 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.699 3.301 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.193 1.193 21 C -0.098 4.098 22 C -0.135 4.135 23 C -0.138 4.138 24 C -0.153 4.153 25 C -0.137 4.137 26 C -0.139 4.139 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.156 0.844 35 H 0.036 0.964 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.662 1.282 -3.852 17.150 hybrid contribution -0.487 2.090 1.658 2.712 sum -17.149 3.372 -2.195 17.615 Atomic orbital electron populations 1.21986 0.94158 1.02495 1.01628 1.21729 0.96576 1.00805 0.92676 0.89548 1.24121 1.04112 0.92702 0.99351 1.87781 1.87541 1.14401 1.19619 1.24343 1.04545 0.98518 0.91943 1.22086 0.93849 0.92309 0.93843 0.93041 1.60809 1.55951 1.04268 1.07382 1.20772 0.91112 0.99496 0.85822 0.90117 1.19571 0.92520 0.96591 0.94592 1.20972 0.88301 1.22430 1.21291 0.90292 1.24969 0.96075 0.96104 0.96425 1.69902 0.97853 1.43306 1.43442 0.86925 0.77413 0.82895 0.82838 1.20620 1.21597 1.19284 1.21175 0.97194 0.94547 0.96889 1.21116 0.95324 1.00149 0.96868 1.21108 0.96961 0.95897 0.99817 1.21039 1.00267 0.95076 0.98879 1.21065 0.95864 0.99500 0.97258 1.20964 0.96678 0.95514 1.00750 0.92563 0.92553 0.91876 0.88294 0.89125 0.86738 0.88572 0.84419 0.96402 0.96826 0.93000 0.86102 0.86518 0.86691 0.86546 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.58 37.15 0.32 -1.19 16 2 C -0.10 -1.18 2.88 -90.30 -0.26 -1.44 16 3 H 0.09 1.03 7.26 -51.93 -0.38 0.65 16 4 C -0.05 -0.66 6.96 37.82 0.26 -0.40 16 5 S -0.32 -4.76 23.27 -107.50 -2.50 -7.27 16 6 C -0.04 -0.72 6.60 37.82 0.25 -0.47 16 7 C 0.09 1.32 2.50 -67.39 -0.17 1.15 16 8 H 0.05 0.75 6.97 -51.92 -0.36 0.39 16 9 N -0.65 -10.85 5.65 -100.61 -0.57 -11.42 16 10 C 0.14 2.49 1.96 -68.86 -0.14 2.36 16 11 H 0.08 1.51 7.38 -51.93 -0.38 1.13 16 12 C 0.00 0.11 3.70 -27.88 -0.10 0.01 16 13 C -0.49 -13.32 9.39 -34.44 -0.32 -13.64 16 14 H 0.08 2.30 7.76 -52.48 -0.41 1.89 16 15 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 16 N -0.91 -27.63 13.96 55.43 0.77 -26.86 16 17 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 21 C -0.10 -1.51 4.58 -104.62 -0.48 -1.99 16 22 C -0.12 -1.69 9.67 -39.58 -0.38 -2.07 16 23 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 24 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 25 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 26 C -0.12 -1.73 9.12 -39.58 -0.36 -2.09 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.50 8.08 -51.92 -0.42 0.08 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.01 7.75 -51.93 -0.40 0.61 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.11 2.19 7.82 -51.93 -0.41 1.79 16 33 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.33 5.09 5.48 -39.29 -0.22 4.88 16 35 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 36 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.12 1.66 8.04 -52.49 -0.42 1.23 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.12 1.62 6.51 -52.48 -0.34 1.28 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -30.01 345.51 -11.06 -41.07 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.63 Total: 6.15 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -2.67 Total: -23.85 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.21 Total: -38.27 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: -4.76 SS G_CDS: -2.50 Total: -7.27 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.01 -11.06 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295606508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.471 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds