Wall clock time and date at job start Tue Mar 31 2020 06:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08997 * 108.83136 * 2 1 4 4 C 1.54257 * 108.75874 * 241.53115 * 2 1 3 5 5 S 1.83947 * 102.58330 * 263.79138 * 4 2 1 6 6 C 1.83950 * 94.80978 * 325.50249 * 5 4 2 7 7 C 1.52341 * 108.86907 * 118.52983 * 2 1 3 8 8 H 1.09007 * 108.86338 * 359.97438 * 7 2 1 9 9 N 1.46898 * 108.86869 * 241.49710 * 7 2 1 10 10 C 1.46899 * 111.00144 * 154.99861 * 9 7 2 11 11 H 1.09001 * 109.47026 * 34.99195 * 10 9 7 12 12 C 1.52999 * 109.47495 * 154.99975 * 10 9 7 13 13 C 1.50699 * 109.46768 * 294.99979 * 12 10 9 14 14 H 1.08007 * 120.00346 * 0.02562 * 13 12 10 15 15 C 1.37880 * 120.00149 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00234 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99663 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47305 * 89.99654 * 17 15 13 19 19 H 1.48498 * 109.46913 * 209.99456 * 17 15 13 20 20 H 1.48502 * 109.47276 * 329.99632 * 17 15 13 21 21 C 1.50706 * 109.47010 * 275.00042 * 10 9 7 22 22 C 1.38234 * 120.00196 * 140.00087 * 21 10 9 23 23 C 1.38235 * 119.99814 * 179.97438 * 22 21 10 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38243 * 120.00076 * 0.02562 * 24 23 22 26 26 C 1.38235 * 119.99598 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47434 * 301.47342 * 1 2 3 28 28 H 1.09007 * 109.47006 * 61.47217 * 1 2 3 29 29 H 1.08999 * 109.47574 * 181.46938 * 1 2 3 30 30 H 1.09000 * 110.78524 * 22.06621 * 4 2 1 31 31 H 1.09002 * 110.78962 * 145.32678 * 4 2 1 32 32 H 1.09001 * 110.79116 * 276.22517 * 6 5 4 33 33 H 1.09000 * 110.79202 * 152.76742 * 6 5 4 34 34 H 1.00904 * 111.00388 * 31.04311 * 9 7 2 35 35 H 1.09006 * 109.47087 * 54.99800 * 12 10 9 36 36 H 1.08993 * 109.47597 * 174.99899 * 12 10 9 37 37 H 0.97005 * 119.99792 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.99516 * 0.24808 * 22 21 10 39 39 H 1.08000 * 119.99318 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00391 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.00221 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.99789 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8817 1.0316 0.0000 4 6 2.0260 -0.6963 -1.2840 5 16 2.3387 -2.4163 -0.7119 6 6 2.9017 -1.9203 0.9676 7 6 2.0226 -0.6885 1.2665 8 1 1.1605 -1.0067 1.8528 9 7 2.8039 0.2725 2.0564 10 6 2.8008 -0.0903 3.4799 11 1 2.8037 -1.1759 3.5782 12 6 4.0462 0.4864 4.1560 13 6 5.2773 -0.1656 3.5811 14 1 5.1810 -0.9160 2.8103 15 6 6.5266 0.1965 4.0384 16 7 7.6009 -0.3729 3.5370 17 14 6.6932 1.4949 5.3711 18 1 6.6675 0.8417 6.7045 19 1 7.9784 2.2186 5.1991 20 1 5.5661 2.4564 5.2691 21 6 1.5666 0.4703 4.1384 22 6 0.8817 -0.2803 5.0757 23 6 -0.2500 0.2342 5.6801 24 6 -0.6966 1.4994 5.3477 25 6 -0.0117 2.2501 4.4104 26 6 1.1200 1.7356 3.8060 27 1 -0.3634 0.5365 0.8764 28 1 -0.3633 0.4908 -0.9030 29 1 -0.3634 -1.0273 0.0264 30 1 1.2561 -0.6791 -2.0554 31 1 2.9439 -0.2328 -1.6455 32 1 3.9573 -1.6488 0.9573 33 1 2.7126 -2.7149 1.6894 34 1 2.4632 1.2127 1.9221 35 1 4.0894 1.5616 3.9815 36 1 4.0000 0.2939 5.2278 37 1 8.4798 -0.1183 3.8591 38 1 1.2334 -1.2669 5.3389 39 1 -0.7853 -0.3525 6.4120 40 1 -1.5806 1.9016 5.8202 41 1 -0.3609 3.2385 4.1504 42 1 1.6549 2.3219 3.0734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295606508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:06 Heat of formation + Delta-G solvation = 5.079105 kcal Electronic energy + Delta-G solvation = -21555.362392 eV Core-core repulsion = 18625.179549 eV Total energy + Delta-G solvation = -2930.182843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.16 seconds Orbital eigenvalues (eV) -40.72935 -38.86704 -36.34307 -34.49499 -32.30093 -31.77816 -30.90966 -29.85181 -28.08803 -26.40540 -23.98922 -23.55804 -23.12714 -21.11087 -20.68566 -18.99134 -17.99170 -17.60318 -16.78619 -16.38049 -16.07606 -15.82908 -15.61435 -15.33965 -14.90157 -14.72264 -14.35077 -14.24631 -14.17246 -13.97302 -13.61279 -13.31579 -13.12965 -12.79995 -12.75084 -12.56860 -12.32301 -12.21108 -11.98230 -11.97695 -11.79415 -11.63813 -11.57600 -11.17572 -10.89048 -10.67825 -9.79589 -9.55795 -9.20745 -8.73201 -8.17032 -6.15639 0.48679 0.52908 0.93319 1.33420 1.35726 1.37549 1.48054 2.41279 2.91190 3.14279 3.28275 3.51821 3.80750 3.87292 3.94731 4.02636 4.16604 4.19466 4.24746 4.31722 4.45582 4.51460 4.62331 4.66486 4.68276 4.71880 4.80102 4.87013 4.94257 5.06751 5.08583 5.12230 5.17837 5.22589 5.32010 5.43355 5.59776 5.64040 5.70432 5.74801 6.15855 6.25269 6.46079 6.61836 6.92289 7.44952 8.99706 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.010041 B = 0.007215 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.988371 B = 3879.891874 C = 6009.925002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.094 0.906 4 C -0.045 4.045 5 S -0.338 6.338 6 C -0.045 4.045 7 C 0.101 3.899 8 H 0.053 0.947 9 N -0.668 5.668 10 C 0.151 3.849 11 H 0.062 0.938 12 C 0.010 3.990 13 C -0.486 4.486 14 H 0.043 0.957 15 C 0.001 3.999 16 N -0.955 5.955 17 Si 0.938 3.062 18 H -0.274 1.274 19 H -0.289 1.289 20 H -0.251 1.251 21 C -0.115 4.115 22 C -0.133 4.133 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.117 4.117 26 C -0.130 4.130 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.343 0.657 35 H 0.017 0.983 36 H 0.010 0.990 37 H 0.260 0.740 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.578 4.975 -2.639 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.112 0.888 4 C -0.193 4.193 5 S -0.113 6.113 6 C -0.194 4.194 7 C -0.010 4.010 8 H 0.071 0.929 9 N -0.301 5.301 10 C 0.041 3.959 11 H 0.080 0.920 12 C -0.027 4.027 13 C -0.524 4.524 14 H 0.061 0.939 15 C -0.194 4.194 16 N -0.598 5.598 17 Si 0.763 3.237 18 H -0.199 1.199 19 H -0.216 1.216 20 H -0.175 1.175 21 C -0.117 4.117 22 C -0.151 4.151 23 C -0.138 4.138 24 C -0.147 4.147 25 C -0.135 4.135 26 C -0.148 4.148 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.035 0.965 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.135 0.865 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.917 3.587 -3.326 20.509 hybrid contribution 0.474 1.316 1.438 2.006 sum -19.443 4.902 -1.888 20.140 Atomic orbital electron populations 1.21918 0.92172 1.02455 1.02863 1.21699 0.98096 1.00555 0.91121 0.88824 1.24276 1.05007 0.89944 1.00027 1.87800 1.87275 1.17374 1.18811 1.24168 1.02558 0.99514 0.93111 1.22048 0.92898 0.91195 0.94881 0.92910 1.60667 1.57241 1.05282 1.06934 1.20312 0.90755 0.98155 0.86704 0.92009 1.19450 0.92776 0.96064 0.94444 1.21254 0.90218 1.21170 1.19785 0.93916 1.25843 0.95802 0.98638 0.99102 1.70069 0.98447 1.45576 1.45662 0.85850 0.77703 0.80337 0.79816 1.19909 1.21565 1.17502 1.20865 0.96852 0.95765 0.98199 1.21236 0.96426 1.00283 0.97194 1.21408 0.96114 0.96576 0.99752 1.21464 1.00758 0.94440 0.97997 1.21399 0.94851 1.00649 0.96630 1.21075 0.97608 0.94890 1.01229 0.92450 0.90242 0.92469 0.85395 0.89291 0.90728 0.89242 0.83412 0.96513 0.97139 0.93107 0.86480 0.84118 0.83521 0.83788 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.58 71.98 0.62 -1.83 16 2 C -0.09 -2.14 2.88 -10.59 -0.03 -2.17 16 3 H 0.09 2.04 7.26 -2.39 -0.02 2.02 16 4 C -0.04 -1.02 6.96 72.41 0.50 -0.52 16 5 S -0.34 -10.20 23.27 -56.49 -1.31 -11.52 16 6 C -0.04 -1.53 6.60 72.41 0.48 -1.05 16 7 C 0.10 2.97 2.50 45.12 0.11 3.09 16 8 H 0.05 1.55 6.97 -2.38 -0.02 1.53 16 9 N -0.67 -22.71 5.65 -472.23 -2.67 -25.37 16 10 C 0.15 5.60 1.96 44.17 0.09 5.69 16 11 H 0.06 2.47 7.38 -2.39 -0.02 2.45 16 12 C 0.01 0.48 3.70 29.85 0.11 0.59 16 13 C -0.49 -27.47 9.39 25.60 0.24 -27.23 16 14 H 0.04 2.67 7.76 -2.91 -0.02 2.65 16 15 C 0.00 0.08 5.47 84.66 0.46 0.54 16 16 N -0.96 -60.72 13.96 21.45 0.30 -60.42 16 17 Si 0.94 45.22 27.47 68.60 1.88 47.11 16 18 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 21 C -0.11 -3.53 4.58 -19.86 -0.09 -3.62 16 22 C -0.13 -3.72 9.67 22.27 0.22 -3.50 16 23 C -0.12 -2.69 10.05 22.27 0.22 -2.47 16 24 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 25 C -0.12 -2.50 10.05 22.27 0.22 -2.27 16 26 C -0.13 -3.43 9.12 22.27 0.20 -3.22 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.09 8.08 -2.38 -0.02 1.07 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.13 2.22 7.75 -2.39 -0.02 2.20 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 3.14 7.82 -2.39 -0.02 3.13 16 33 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.34 10.32 5.48 -89.69 -0.49 9.83 16 35 H 0.02 0.77 7.20 -2.38 -0.02 0.75 16 36 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 37 H 0.26 15.62 8.31 -92.70 -0.77 14.84 16 38 H 0.12 3.23 8.04 -2.91 -0.02 3.21 16 39 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.12 3.07 6.51 -2.91 -0.02 3.06 16 Total: -1.00 -67.68 345.51 2.23 -65.45 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.45 Total: 25.07 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.58 Total: -40.31 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -2.37 Total: -85.80 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Atomic # 16 Polarization: -10.20 SS G_CDS: -1.31 Total: -11.52 kcal Total: -67.68 2.23 -65.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295606508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.527 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.16 seconds