Wall clock time and date at job start Tue Mar 31 2020 06:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 108.71031 * 2 1 4 4 C 1.54260 * 108.87111 * 241.53192 * 2 1 3 5 5 S 1.83952 * 102.58379 * 214.65464 * 4 2 1 6 6 C 1.83961 * 94.80610 * 34.49799 * 5 4 2 7 7 C 1.52340 * 108.86394 * 118.45933 * 2 1 3 8 8 H 1.08998 * 108.86496 * 241.49146 * 7 2 1 9 9 N 1.46896 * 108.86809 * 0.02562 * 7 2 1 10 10 C 1.46901 * 110.99763 * 206.13353 * 9 7 2 11 11 H 1.09002 * 109.47372 * 326.29112 * 10 9 7 12 12 C 1.52996 * 109.47244 * 206.29316 * 10 9 7 13 13 C 1.50693 * 109.47347 * 65.57147 * 12 10 9 14 14 H 1.07998 * 120.00297 * 356.27505 * 13 12 10 15 15 C 1.37881 * 120.00105 * 176.28108 * 13 12 10 16 16 N 1.31508 * 119.99973 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99874 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47215 * 89.99528 * 17 15 13 19 19 H 1.48501 * 109.47031 * 329.99608 * 17 15 13 20 20 H 1.48504 * 109.46856 * 209.99758 * 17 15 13 21 21 C 1.50700 * 109.47167 * 86.29210 * 10 9 7 22 22 C 1.38238 * 120.00012 * 39.72691 * 21 10 9 23 23 C 1.38236 * 119.99715 * 179.79237 * 22 21 10 24 24 C 1.38238 * 120.00282 * 0.43435 * 23 22 21 25 25 C 1.38235 * 119.99668 * 359.81860 * 24 23 22 26 26 C 1.38233 * 120.00314 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47427 * 301.54083 * 1 2 3 28 28 H 1.08999 * 109.46884 * 61.54236 * 1 2 3 29 29 H 1.08997 * 109.47554 * 181.53907 * 1 2 3 30 30 H 1.09000 * 110.78480 * 332.92976 * 4 2 1 31 31 H 1.09004 * 110.78501 * 96.19198 * 4 2 1 32 32 H 1.09002 * 110.78367 * 207.23274 * 6 5 4 33 33 H 1.08998 * 110.78664 * 83.77613 * 6 5 4 34 34 H 1.00903 * 111.00322 * 82.17923 * 9 7 2 35 35 H 1.09007 * 109.47064 * 305.57277 * 12 10 9 36 36 H 1.09004 * 109.47556 * 185.57236 * 12 10 9 37 37 H 0.96996 * 120.00141 * 0.02562 * 16 15 13 38 38 H 1.07998 * 119.99580 * 359.97438 * 22 21 10 39 39 H 1.08005 * 119.99773 * 180.27723 * 23 22 21 40 40 H 1.08000 * 119.99859 * 179.83773 * 24 23 22 41 41 H 1.07999 * 119.99860 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.00238 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8796 1.0324 0.0000 4 6 2.0289 -0.6958 -1.2832 5 16 3.5560 -1.5463 -0.7100 6 6 2.9046 -1.9171 0.9700 7 6 2.0225 -0.6870 1.2674 8 1 2.6023 0.0268 1.8526 9 7 0.8608 -1.1159 2.0574 10 6 1.1977 -1.2024 3.4846 11 1 2.2344 -1.5206 3.5946 12 6 0.2778 -2.2180 4.1652 13 6 0.5567 -3.5941 3.6181 14 1 1.2713 -3.7228 2.8186 15 6 -0.1004 -4.6891 4.1381 16 7 -0.9702 -4.5325 5.1119 17 14 0.2460 -6.3950 3.4603 18 1 1.3605 -7.0135 4.2223 19 1 0.6235 -6.2913 2.0278 20 1 -0.9706 -7.2364 3.5920 21 6 1.0161 0.1489 4.1265 22 6 -0.0578 0.9439 3.7719 23 6 -0.2267 2.1816 4.3638 24 6 0.6832 2.6282 5.3038 25 6 1.7600 1.8354 5.6545 26 6 1.9266 0.5959 5.0658 27 1 -0.3634 0.5375 0.8758 28 1 -0.3633 0.4897 -0.9035 29 1 -0.3634 -1.0272 0.0276 30 1 1.2954 -1.4178 -1.6419 31 1 2.2580 0.0373 -2.0566 32 1 3.7177 -1.9937 1.6919 33 1 2.3069 -2.8285 0.9606 34 1 0.4967 -1.9936 1.7179 35 1 -0.7618 -1.9538 3.9711 36 1 0.4600 -2.2105 5.2398 37 1 -1.1498 -3.6468 5.4641 38 1 -0.7664 0.5966 3.0345 39 1 -1.0682 2.8008 4.0900 40 1 0.5527 3.5964 5.7643 41 1 2.4711 2.1845 6.3886 42 1 2.7676 -0.0236 5.3401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295606513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:17 Heat of formation + Delta-G solvation = 12.707557 kcal Electronic energy + Delta-G solvation = -21678.286743 eV Core-core repulsion = 18748.434695 eV Total energy + Delta-G solvation = -2929.852049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.32390 -37.84077 -34.95919 -32.77109 -31.01457 -30.53888 -29.14700 -28.08149 -26.46842 -24.29495 -23.51923 -22.27250 -22.02059 -19.94013 -19.06821 -17.04133 -16.47263 -16.25771 -15.96091 -15.05234 -14.81705 -14.49928 -14.04824 -13.76137 -13.60425 -13.34616 -13.20265 -12.93047 -12.62973 -12.29478 -12.07645 -11.91270 -11.82689 -11.79167 -11.48379 -11.10957 -10.88248 -10.70694 -10.56638 -10.50523 -10.35198 -10.21313 -9.98838 -9.80020 -8.76645 -8.56042 -8.43206 -8.17882 -7.96550 -7.62145 -6.45546 -4.17548 1.73817 1.79102 1.98462 2.40615 3.37866 3.39752 3.55047 4.16356 4.45389 4.49399 4.64386 4.86737 5.13682 5.16540 5.23723 5.27266 5.30385 5.33194 5.38999 5.50758 5.58922 5.67772 5.76211 5.88436 5.90100 5.93719 5.95559 6.07325 6.21277 6.30222 6.37093 6.43556 6.51455 6.65997 6.80023 6.85864 7.04567 7.15815 7.27802 7.39443 7.71792 7.94242 8.03869 8.32425 8.76257 9.55322 10.94644 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.009046 B = 0.007704 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.706328 B = 3633.658647 C = 5890.572583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.085 4.085 3 H 0.077 0.923 4 C -0.059 4.059 5 S -0.320 6.320 6 C -0.086 4.086 7 C 0.090 3.910 8 H 0.082 0.918 9 N -0.665 5.665 10 C 0.132 3.868 11 H 0.044 0.956 12 C 0.016 3.984 13 C -0.607 4.607 14 H 0.048 0.952 15 C 0.021 3.979 16 N -0.907 5.907 17 Si 1.066 2.934 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.284 1.284 21 C -0.057 4.057 22 C -0.089 4.089 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.124 4.124 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.361 0.639 35 H 0.018 0.982 36 H 0.015 0.985 37 H 0.271 0.729 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 11.909 -7.083 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.207 4.207 5 S -0.094 6.094 6 C -0.236 4.236 7 C -0.023 4.023 8 H 0.100 0.900 9 N -0.299 5.299 10 C 0.023 3.977 11 H 0.062 0.938 12 C -0.022 4.022 13 C -0.645 4.645 14 H 0.066 0.934 15 C -0.184 4.184 16 N -0.542 5.542 17 Si 0.895 3.105 18 H -0.215 1.215 19 H -0.214 1.214 20 H -0.209 1.209 21 C -0.058 4.058 22 C -0.107 4.107 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.144 4.144 26 C -0.142 4.142 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.184 0.816 35 H 0.036 0.964 36 H 0.033 0.967 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.577 10.672 -7.422 13.782 hybrid contribution 0.094 0.982 0.541 1.125 sum 4.671 11.654 -6.882 14.317 Atomic orbital electron populations 1.21642 0.92976 1.02591 1.00870 1.21576 0.98195 0.99584 0.91147 0.90503 1.24288 0.95291 1.00958 1.00176 1.87824 1.25878 1.76644 1.19041 1.25124 1.02457 1.02460 0.93510 1.22128 0.90714 0.94361 0.95069 0.89964 1.60866 1.28584 1.38313 1.02162 1.20530 0.99030 0.90890 0.87295 0.93814 1.19368 0.94402 0.92900 0.95491 1.21953 1.27601 0.92474 1.22486 0.93413 1.25748 0.93615 1.03886 0.95114 1.70739 1.32055 1.26789 1.24659 0.83577 0.76360 0.75169 0.75443 1.21512 1.21421 1.20934 1.20204 0.94072 0.95997 0.95479 1.21041 0.97549 0.93231 0.98917 1.21136 0.99140 0.96817 0.97683 1.20994 0.95730 0.99628 0.99056 1.20988 0.98268 0.94898 1.00269 1.21052 0.99524 0.96015 0.97644 0.90860 0.94331 0.92270 0.89271 0.88314 0.88201 0.88454 0.81565 0.96425 0.96686 0.91857 0.85421 0.86831 0.87003 0.86865 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 7.88 37.16 0.29 -1.20 16 2 C -0.08 -1.05 3.17 -90.30 -0.29 -1.33 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.06 -0.70 6.92 37.82 0.26 -0.44 16 5 S -0.32 -4.62 23.27 -107.50 -2.50 -7.12 16 6 C -0.09 -1.29 6.64 37.82 0.25 -1.04 16 7 C 0.09 1.29 2.75 -67.39 -0.19 1.11 16 8 H 0.08 1.25 7.64 -51.93 -0.40 0.85 16 9 N -0.67 -10.87 3.12 -100.62 -0.31 -11.19 16 10 C 0.13 2.47 1.97 -68.87 -0.14 2.34 16 11 H 0.04 0.86 7.41 -51.93 -0.38 0.47 16 12 C 0.02 0.37 3.87 -27.89 -0.11 0.26 16 13 C -0.61 -15.60 8.18 -34.44 -0.28 -15.88 16 14 H 0.05 1.19 7.08 -52.49 -0.37 0.82 16 15 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 16 N -0.91 -26.68 13.65 55.43 0.76 -25.92 16 17 Si 1.07 24.34 29.90 -169.99 -5.08 19.26 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.06 -0.98 4.66 -104.62 -0.49 -1.47 16 22 C -0.09 -1.44 9.33 -39.58 -0.37 -1.81 16 23 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 24 C -0.14 -1.85 10.05 -39.58 -0.40 -2.25 16 25 C -0.13 -1.80 10.05 -39.58 -0.40 -2.19 16 26 C -0.12 -2.00 9.67 -39.58 -0.38 -2.38 16 27 H 0.07 0.97 6.92 -51.93 -0.36 0.61 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.79 7.32 -51.93 -0.38 0.41 16 30 H 0.09 1.04 7.86 -51.93 -0.41 0.63 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.10 1.62 7.25 -51.93 -0.38 1.24 16 34 H 0.36 6.59 6.04 -39.29 -0.24 6.35 16 35 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.01 0.39 7.86 -51.93 -0.41 -0.02 16 37 H 0.27 7.99 7.20 -40.82 -0.29 7.69 16 38 H 0.13 2.07 6.94 -52.49 -0.36 1.70 16 39 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 40 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.11 1.76 8.04 -52.49 -0.42 1.34 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -27.66 344.31 -11.25 -38.91 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.58 Total: 8.92 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -2.72 Total: -28.05 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.44 Total: -37.11 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.26 kcal Atomic # 16 Polarization: -4.62 SS G_CDS: -2.50 Total: -7.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.66 -11.25 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295606513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.622 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds