Wall clock time and date at job start Tue Mar 31 2020 06:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 108.71031 * 2 1 4 4 C 1.54260 * 108.87111 * 241.53192 * 2 1 3 5 5 S 1.83952 * 102.58379 * 214.65464 * 4 2 1 6 6 C 1.83961 * 94.80610 * 34.49799 * 5 4 2 7 7 C 1.52340 * 108.86394 * 118.45933 * 2 1 3 8 8 H 1.08998 * 108.86496 * 241.49146 * 7 2 1 9 9 N 1.46896 * 108.86809 * 0.02562 * 7 2 1 10 10 C 1.46901 * 110.99763 * 206.13353 * 9 7 2 11 11 H 1.09002 * 109.47372 * 326.29112 * 10 9 7 12 12 C 1.52996 * 109.47244 * 206.29316 * 10 9 7 13 13 C 1.50693 * 109.47347 * 65.57147 * 12 10 9 14 14 H 1.07998 * 120.00297 * 356.27505 * 13 12 10 15 15 C 1.37881 * 120.00105 * 176.28108 * 13 12 10 16 16 N 1.31508 * 119.99973 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99874 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47215 * 89.99528 * 17 15 13 19 19 H 1.48501 * 109.47031 * 329.99608 * 17 15 13 20 20 H 1.48504 * 109.46856 * 209.99758 * 17 15 13 21 21 C 1.50700 * 109.47167 * 86.29210 * 10 9 7 22 22 C 1.38238 * 120.00012 * 39.72691 * 21 10 9 23 23 C 1.38236 * 119.99715 * 179.79237 * 22 21 10 24 24 C 1.38238 * 120.00282 * 0.43435 * 23 22 21 25 25 C 1.38235 * 119.99668 * 359.81860 * 24 23 22 26 26 C 1.38233 * 120.00314 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47427 * 301.54083 * 1 2 3 28 28 H 1.08999 * 109.46884 * 61.54236 * 1 2 3 29 29 H 1.08997 * 109.47554 * 181.53907 * 1 2 3 30 30 H 1.09000 * 110.78480 * 332.92976 * 4 2 1 31 31 H 1.09004 * 110.78501 * 96.19198 * 4 2 1 32 32 H 1.09002 * 110.78367 * 207.23274 * 6 5 4 33 33 H 1.08998 * 110.78664 * 83.77613 * 6 5 4 34 34 H 1.00903 * 111.00322 * 82.17923 * 9 7 2 35 35 H 1.09007 * 109.47064 * 305.57277 * 12 10 9 36 36 H 1.09004 * 109.47556 * 185.57236 * 12 10 9 37 37 H 0.96996 * 120.00141 * 0.02562 * 16 15 13 38 38 H 1.07998 * 119.99580 * 359.97438 * 22 21 10 39 39 H 1.08005 * 119.99773 * 180.27723 * 23 22 21 40 40 H 1.08000 * 119.99859 * 179.83773 * 24 23 22 41 41 H 1.07999 * 119.99860 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.00238 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8796 1.0324 0.0000 4 6 2.0289 -0.6958 -1.2832 5 16 3.5560 -1.5463 -0.7100 6 6 2.9046 -1.9171 0.9700 7 6 2.0225 -0.6870 1.2674 8 1 2.6023 0.0268 1.8526 9 7 0.8608 -1.1159 2.0574 10 6 1.1977 -1.2024 3.4846 11 1 2.2344 -1.5206 3.5946 12 6 0.2778 -2.2180 4.1652 13 6 0.5567 -3.5941 3.6181 14 1 1.2713 -3.7228 2.8186 15 6 -0.1004 -4.6891 4.1381 16 7 -0.9702 -4.5325 5.1119 17 14 0.2460 -6.3950 3.4603 18 1 1.3605 -7.0135 4.2223 19 1 0.6235 -6.2913 2.0278 20 1 -0.9706 -7.2364 3.5920 21 6 1.0161 0.1489 4.1265 22 6 -0.0578 0.9439 3.7719 23 6 -0.2267 2.1816 4.3638 24 6 0.6832 2.6282 5.3038 25 6 1.7600 1.8354 5.6545 26 6 1.9266 0.5959 5.0658 27 1 -0.3634 0.5375 0.8758 28 1 -0.3633 0.4897 -0.9035 29 1 -0.3634 -1.0272 0.0276 30 1 1.2954 -1.4178 -1.6419 31 1 2.2580 0.0373 -2.0566 32 1 3.7177 -1.9937 1.6919 33 1 2.3069 -2.8285 0.9606 34 1 0.4967 -1.9936 1.7179 35 1 -0.7618 -1.9538 3.9711 36 1 0.4600 -2.2105 5.2398 37 1 -1.1498 -3.6468 5.4641 38 1 -0.7664 0.5966 3.0345 39 1 -1.0682 2.8008 4.0900 40 1 0.5527 3.5964 5.7643 41 1 2.4711 2.1845 6.3886 42 1 2.7676 -0.0236 5.3401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295606513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:13 Heat of formation + Delta-G solvation = 0.406273 kcal Electronic energy + Delta-G solvation = -21678.820167 eV Core-core repulsion = 18748.434695 eV Total energy + Delta-G solvation = -2930.385472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -40.60710 -39.01779 -36.50112 -34.59641 -32.22580 -31.71393 -30.51405 -29.57763 -27.66995 -26.01795 -24.68072 -23.86147 -23.29230 -21.32354 -20.20611 -18.93409 -17.78199 -17.44342 -17.23743 -16.37011 -16.09218 -15.70943 -15.62669 -15.24062 -14.85306 -14.80722 -14.53332 -14.12667 -13.89276 -13.72914 -13.39181 -13.31985 -13.26310 -12.95177 -12.87345 -12.67223 -12.33612 -12.15588 -11.98301 -11.84324 -11.70752 -11.59371 -11.45927 -10.95618 -10.71229 -10.56128 -9.73578 -9.49026 -9.33524 -8.79446 -8.65660 -6.37510 0.53646 0.60407 0.85145 1.30242 1.51084 1.58123 1.74742 2.53858 2.95495 3.11905 3.28227 3.46441 3.84899 3.90553 4.02943 4.08913 4.10622 4.21711 4.25179 4.35784 4.43466 4.50303 4.62486 4.67514 4.69091 4.74606 4.78014 4.82987 4.87079 5.10768 5.17622 5.21043 5.26683 5.34109 5.36324 5.63662 5.64080 5.70365 5.80075 5.94822 6.16784 6.22214 6.26361 6.45369 6.58242 7.43730 8.73953 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.009046 B = 0.007704 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.706328 B = 3633.658647 C = 5890.572583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 H 0.090 0.910 4 C -0.047 4.047 5 S -0.338 6.338 6 C -0.083 4.083 7 C 0.095 3.905 8 H 0.076 0.924 9 N -0.654 5.654 10 C 0.148 3.852 11 H 0.030 0.970 12 C 0.026 3.974 13 C -0.604 4.604 14 H 0.055 0.945 15 C -0.032 4.032 16 N -0.938 5.938 17 Si 1.111 2.889 18 H -0.279 1.279 19 H -0.267 1.267 20 H -0.286 1.286 21 C -0.080 4.080 22 C -0.101 4.101 23 C -0.130 4.130 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.141 4.141 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.349 0.651 35 H -0.004 1.004 36 H -0.017 1.017 37 H 0.256 0.744 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 13.738 -8.431 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.099 4.099 3 H 0.108 0.892 4 C -0.195 4.195 5 S -0.112 6.112 6 C -0.233 4.233 7 C -0.017 4.017 8 H 0.094 0.906 9 N -0.286 5.286 10 C 0.038 3.962 11 H 0.048 0.952 12 C -0.011 4.011 13 C -0.641 4.641 14 H 0.073 0.927 15 C -0.231 4.231 16 N -0.575 5.575 17 Si 0.934 3.066 18 H -0.205 1.205 19 H -0.191 1.191 20 H -0.212 1.212 21 C -0.081 4.081 22 C -0.120 4.120 23 C -0.147 4.147 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.160 4.160 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.171 0.829 35 H 0.014 0.986 36 H 0.002 0.998 37 H 0.065 0.935 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.077 12.531 -8.783 16.123 hybrid contribution -0.046 0.517 0.970 1.100 sum 5.030 13.048 -7.813 16.019 Atomic orbital electron populations 1.21565 0.92652 1.01749 1.01530 1.21525 0.98280 0.99898 0.90211 0.89211 1.24397 0.93615 1.01199 1.00250 1.87889 1.27734 1.77221 1.18344 1.24972 1.02142 1.01895 0.94325 1.22176 0.89721 0.93940 0.95828 0.90571 1.60918 1.29484 1.37234 1.00996 1.20170 0.96655 0.90899 0.88447 0.95208 1.19172 0.94238 0.93772 0.93934 1.22306 1.26604 0.93376 1.21863 0.92714 1.27159 0.93127 1.07931 0.94840 1.70872 1.34217 1.25820 1.26600 0.82994 0.76341 0.71157 0.76131 1.20480 1.19138 1.21161 1.20093 0.95662 0.95516 0.96839 1.21072 0.97160 0.94260 0.99463 1.21457 1.00011 0.96070 0.97206 1.21424 0.94612 1.00696 0.98071 1.21324 0.99011 0.93907 1.00153 1.21193 0.99571 0.97286 0.97951 0.92009 0.91954 0.93736 0.88758 0.85694 0.88836 0.90252 0.82941 0.98581 0.99829 0.93491 0.86145 0.84182 0.83568 0.84193 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 7.88 71.98 0.57 -2.08 16 2 C -0.08 -1.81 3.17 -10.59 -0.03 -1.84 16 3 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.05 -0.99 6.92 72.41 0.50 -0.49 16 5 S -0.34 -9.34 23.27 -56.49 -1.31 -10.65 16 6 C -0.08 -2.53 6.64 72.41 0.48 -2.05 16 7 C 0.10 2.73 2.75 45.13 0.12 2.85 16 8 H 0.08 2.30 7.64 -2.39 -0.02 2.28 16 9 N -0.65 -21.93 3.12 -472.24 -1.47 -23.40 16 10 C 0.15 5.79 1.97 44.17 0.09 5.88 16 11 H 0.03 1.23 7.41 -2.39 -0.02 1.21 16 12 C 0.03 1.30 3.87 29.84 0.12 1.41 16 13 C -0.60 -32.04 8.18 25.60 0.21 -31.83 16 14 H 0.05 2.78 7.08 -2.91 -0.02 2.76 16 15 C -0.03 -1.80 5.46 84.66 0.46 -1.34 16 16 N -0.94 -57.15 13.65 21.45 0.29 -56.86 16 17 Si 1.11 49.37 29.90 68.60 2.05 51.42 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 21 C -0.08 -2.84 4.66 -19.86 -0.09 -2.93 16 22 C -0.10 -3.26 9.33 22.27 0.21 -3.05 16 23 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 24 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 25 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 26 C -0.14 -4.57 9.67 22.27 0.22 -4.36 16 27 H 0.06 1.57 6.92 -2.39 -0.02 1.55 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 29 H 0.04 1.14 7.32 -2.39 -0.02 1.13 16 30 H 0.09 1.95 7.86 -2.39 -0.02 1.93 16 31 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.08 2.69 7.25 -2.39 -0.02 2.67 16 34 H 0.35 13.15 6.04 -89.69 -0.54 12.61 16 35 H 0.00 -0.22 8.12 -2.38 -0.02 -0.24 16 36 H -0.02 -0.92 7.86 -2.38 -0.02 -0.94 16 37 H 0.26 15.90 7.20 -92.71 -0.67 15.23 16 38 H 0.12 3.96 6.94 -2.91 -0.02 3.94 16 39 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 42 H 0.11 3.54 8.04 -2.91 -0.02 3.52 16 Total: -1.00 -61.68 344.31 3.63 -58.06 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.55 Total: 30.47 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 3.52 Total: -49.05 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -1.18 Total: -80.26 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.42 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.31 Total: -10.65 kcal Total: -61.68 3.63 -58.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295606513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.465 kcal (2) G-P(sol) polarization free energy of solvation -61.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds