Wall clock time and date at job start Tue Mar 31 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00063 * 2 1 4 4 H 1.08003 * 119.99815 * 164.52839 * 3 2 1 5 5 C 1.38810 * 119.99745 * 344.25383 * 3 2 1 6 6 N 1.31612 * 120.00521 * 344.66817 * 5 3 2 7 7 Si 1.86800 * 119.99654 * 164.66626 * 5 3 2 8 8 H 1.48504 * 109.47046 * 60.00133 * 7 5 3 9 9 H 1.48497 * 109.47359 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47465 * 300.00058 * 7 5 3 11 11 C 1.46500 * 120.00058 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.46958 * 270.00214 * 11 2 1 13 13 C 1.38224 * 120.01903 * 104.72569 * 12 11 2 14 14 C 1.38226 * 120.02566 * 179.72387 * 13 12 11 15 15 C 1.50695 * 119.96883 * 180.27380 * 14 13 12 16 16 N 1.46896 * 109.47267 * 270.27123 * 15 14 13 17 17 C 1.46905 * 110.99949 * 293.95806 * 16 15 14 18 18 C 1.46902 * 111.00293 * 170.00751 * 16 15 14 19 19 C 1.47198 * 109.47154 * 190.00229 * 18 16 15 20 20 N 8.25479 * 54.94852 * 123.63875 * 2 1 3 21 21 C 1.38264 * 120.04988 * 0.54494 * 14 13 12 22 22 C 1.38174 * 120.02803 * 359.73009 * 21 14 13 23 23 C 1.38446 * 120.01140 * 284.99535 * 12 11 2 24 24 F 1.35102 * 120.02158 * 0.02658 * 23 12 11 25 25 H 1.08997 * 109.47001 * 84.91724 * 1 2 3 26 26 H 1.08997 * 109.47388 * 204.91551 * 1 2 3 27 27 H 1.09000 * 109.47246 * 324.92219 * 1 2 3 28 28 H 0.96994 * 120.00579 * 180.02562 * 6 5 3 29 29 H 1.09008 * 109.47191 * 29.99490 * 11 2 1 30 30 H 1.08996 * 109.47523 * 150.00020 * 11 2 1 31 31 H 1.07996 * 119.98092 * 359.97438 * 13 12 11 32 32 H 1.08999 * 109.47663 * 30.27505 * 15 14 13 33 33 H 1.09006 * 109.47013 * 150.27664 * 15 14 13 34 34 H 1.09000 * 109.46875 * 60.00081 * 17 16 15 35 35 H 1.09004 * 109.46879 * 179.97438 * 17 16 15 36 36 H 1.08994 * 109.47316 * 299.99741 * 17 16 15 37 37 H 1.09004 * 109.46572 * 309.99787 * 18 16 15 38 38 H 1.08998 * 109.47388 * 69.99802 * 18 16 15 39 39 H 1.08002 * 119.98197 * 179.70258 * 21 14 13 40 40 H 1.07997 * 120.01059 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2004 1.2028 0.2495 5 6 1.4947 2.3655 -0.3262 6 7 0.3209 2.3239 -0.9201 7 14 2.2792 4.0119 0.0777 8 1 3.5856 4.1221 -0.6199 9 1 1.3852 5.1096 -0.3705 10 1 2.4911 4.1129 1.5440 11 6 2.1975 -1.2687 -0.0006 12 6 2.4486 -1.7044 1.4200 13 6 1.7048 -2.7314 1.9701 14 6 1.9389 -3.1349 3.2713 15 6 1.1315 -4.2589 3.8676 16 7 -0.0719 -3.7113 4.5078 17 6 0.2802 -2.8804 5.6671 18 6 -0.9989 -4.7844 4.8915 19 6 -2.2840 -4.1980 5.3053 20 7 -3.2758 -3.7434 5.6261 21 6 2.9094 -2.5044 4.0277 22 6 3.6503 -1.4737 3.4819 23 6 3.4206 -1.0723 2.1766 24 9 4.1441 -0.0644 1.6420 25 1 -0.3633 0.0910 -1.0236 26 1 -0.3634 -0.9320 0.4329 27 1 -0.3634 0.8410 0.5906 28 1 -0.1366 3.1481 -1.1484 29 1 1.6084 -2.0282 -0.5147 30 1 3.1499 -1.1382 -0.5143 31 1 0.9433 -3.2214 1.3816 32 1 0.8398 -4.9543 3.0806 33 1 1.7320 -4.7829 4.6113 34 1 0.9110 -2.0528 5.3427 35 1 -0.6290 -2.4873 6.1219 36 1 0.8199 -3.4844 6.3964 37 1 -1.1590 -5.4473 4.0411 38 1 -0.5749 -5.3519 5.7198 39 1 3.0881 -2.8174 5.0458 40 1 4.4080 -0.9811 4.0731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297291672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:06 Heat of formation + Delta-G solvation = 47.914421 kcal Electronic energy + Delta-G solvation = -23006.108421 eV Core-core repulsion = 19543.862632 eV Total energy + Delta-G solvation = -3462.245789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.19624 -39.44220 -37.83960 -36.10281 -35.38720 -32.17377 -31.29208 -30.15217 -28.56302 -26.96421 -26.12670 -25.50384 -23.15687 -22.20450 -21.36664 -19.79855 -17.88485 -17.04041 -16.78357 -16.23697 -16.17977 -15.59582 -15.21580 -15.03518 -14.48148 -14.00419 -13.88156 -13.59008 -13.45147 -13.16956 -13.07963 -12.95570 -12.76593 -12.61915 -12.14350 -11.86878 -11.82463 -11.72857 -11.56351 -11.26777 -11.14334 -10.78334 -10.60636 -10.53637 -10.27306 -9.92062 -9.66932 -8.77591 -8.57084 -8.44312 -8.06586 -6.79053 -5.64640 -3.04556 1.46188 1.61751 2.44612 2.59670 3.45496 3.50439 3.52846 3.59190 3.83978 4.10250 4.60518 4.64800 4.78758 4.83880 4.89035 4.93074 5.15829 5.18911 5.24646 5.34117 5.42688 5.50326 5.62368 5.71768 5.82002 5.86543 6.07754 6.24283 6.38764 6.53883 6.55795 6.58260 6.63880 6.75886 6.83311 6.91011 7.32269 7.37559 7.51624 7.78878 7.96554 8.43644 9.31503 9.94012 10.38893 11.41145 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.004455 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.047425 B = 6284.181822 C = 7058.908100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.594 5.594 3 C -0.254 4.254 4 H 0.082 0.918 5 C -0.002 4.002 6 N -0.912 5.912 7 Si 0.901 3.099 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.184 3.816 12 C -0.119 4.119 13 C -0.065 4.065 14 C -0.107 4.107 15 C 0.105 3.895 16 N -0.533 5.533 17 C 0.016 3.984 18 C 0.148 3.852 19 C 0.213 3.787 20 N -0.427 5.427 21 C -0.099 4.099 22 C -0.165 4.165 23 C 0.126 3.874 24 F -0.128 7.128 25 H 0.027 0.973 26 H -0.003 1.003 27 H 0.049 0.951 28 H 0.251 0.749 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -17.496 11.443 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.315 5.315 3 C -0.383 4.383 4 H 0.100 0.900 5 C -0.199 4.199 6 N -0.558 5.558 7 Si 0.731 3.269 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.212 1.212 11 C 0.056 3.944 12 C -0.123 4.123 13 C -0.085 4.085 14 C -0.107 4.107 15 C -0.022 4.022 16 N -0.258 5.258 17 C -0.131 4.131 18 C 0.018 3.982 19 C -0.106 4.106 20 N -0.105 5.105 21 C -0.118 4.118 22 C -0.184 4.184 23 C 0.105 3.895 24 F -0.106 7.106 25 H 0.045 0.955 26 H 0.015 0.985 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.144 0.856 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.080 -16.308 11.460 20.040 hybrid contribution 1.213 0.707 0.704 1.570 sum 3.293 -15.600 12.164 20.054 Atomic orbital electron populations 1.20836 0.82064 0.95734 0.99300 1.43982 1.02033 1.00169 1.85277 1.19504 0.95029 0.84142 1.39602 0.90036 1.24865 0.97380 0.98039 0.99607 1.70116 1.16085 1.26119 1.43441 0.86370 0.78331 0.83831 0.78324 1.20958 1.21731 1.21217 1.19685 0.97066 0.89159 0.88513 1.21401 0.94272 0.95080 1.01574 1.20738 0.97617 0.95787 0.94309 1.19473 0.97645 0.98975 0.94653 1.20985 0.88686 0.94460 0.98037 1.61893 1.14868 1.20448 1.28621 1.22571 1.01573 0.98150 0.90847 1.19546 0.84108 0.92686 1.01890 1.28998 0.94638 0.93836 0.93123 1.81282 1.12317 1.07379 1.09481 1.20634 0.96157 0.96040 0.98969 1.21018 1.02892 1.00134 0.94381 1.17599 0.92627 0.87279 0.91958 1.91503 1.75608 1.57335 1.86164 0.95462 0.98493 0.93231 0.93869 0.93009 0.92307 0.85639 0.89251 0.93351 0.89727 0.91684 0.94958 0.86159 0.90204 0.86258 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.18 8.97 59.85 0.54 4.72 16 2 N -0.59 -15.13 2.92 -182.50 -0.53 -15.66 16 3 C -0.25 -7.12 9.23 -15.06 -0.14 -7.26 16 4 H 0.08 2.26 5.75 -52.48 -0.30 1.96 16 5 C 0.00 -0.05 5.08 -17.43 -0.09 -0.14 16 6 N -0.91 -27.24 10.43 55.49 0.58 -26.66 16 7 Si 0.90 22.76 29.58 -169.99 -5.03 17.73 16 8 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 C 0.18 3.77 5.50 -5.20 -0.03 3.74 16 12 C -0.12 -2.13 5.47 -104.55 -0.57 -2.70 16 13 C -0.07 -0.94 9.32 -39.59 -0.37 -1.31 16 14 C -0.11 -1.26 4.88 -104.62 -0.51 -1.77 16 15 C 0.10 0.84 5.12 -4.98 -0.03 0.81 16 16 N -0.53 -4.81 4.73 -247.90 -1.17 -5.98 16 17 C 0.02 0.15 8.96 60.07 0.54 0.69 16 18 C 0.15 0.91 5.46 -6.61 -0.04 0.88 16 19 C 0.21 2.17 14.47 -20.72 -0.30 1.87 16 20 N -0.43 -5.82 18.55 42.20 0.78 -5.03 16 21 C -0.10 -1.17 7.96 -39.60 -0.32 -1.49 16 22 C -0.17 -2.40 10.03 -39.52 -0.40 -2.80 16 23 C 0.13 2.28 7.21 -39.42 -0.28 2.00 16 24 F -0.13 -2.66 14.22 2.25 0.03 -2.63 16 25 H 0.03 0.73 7.53 -51.93 -0.39 0.34 16 26 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 27 H 0.05 1.38 6.89 -51.93 -0.36 1.02 16 28 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.05 0.95 7.89 -51.92 -0.41 0.54 16 30 H 0.06 1.23 7.98 -51.93 -0.41 0.81 16 31 H 0.13 1.65 8.00 -52.49 -0.42 1.23 16 32 H 0.09 0.57 7.88 -51.93 -0.41 0.16 16 33 H 0.05 0.29 8.06 -51.93 -0.42 -0.13 16 34 H 0.08 0.93 6.17 -51.93 -0.32 0.61 16 35 H 0.06 0.66 7.17 -51.93 -0.37 0.29 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.12 0.46 7.93 -51.93 -0.41 0.05 16 38 H 0.08 0.28 8.12 -51.93 -0.42 -0.14 16 39 H 0.12 1.07 8.03 -52.49 -0.42 0.65 16 40 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -33.72 339.35 -7.68 -41.41 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -5.47 Total: -5.53 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.99 Total: -2.76 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.34 Total: -53.34 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.03 Total: -2.63 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.72 -7.68 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297291672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.320 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds