Wall clock time and date at job start Tue Mar 31 2020 07:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00063 * 2 1 4 4 H 1.08003 * 119.99815 * 164.52839 * 3 2 1 5 5 C 1.38810 * 119.99745 * 344.25383 * 3 2 1 6 6 N 1.31612 * 120.00521 * 344.66817 * 5 3 2 7 7 Si 1.86800 * 119.99654 * 164.66626 * 5 3 2 8 8 H 1.48504 * 109.47046 * 60.00133 * 7 5 3 9 9 H 1.48497 * 109.47359 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47465 * 300.00058 * 7 5 3 11 11 C 1.46500 * 120.00058 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.46958 * 270.00214 * 11 2 1 13 13 C 1.38224 * 120.01903 * 104.72569 * 12 11 2 14 14 C 1.38226 * 120.02566 * 179.72387 * 13 12 11 15 15 C 1.50695 * 119.96883 * 180.27380 * 14 13 12 16 16 N 1.46896 * 109.47267 * 270.27123 * 15 14 13 17 17 C 1.46905 * 110.99949 * 293.95806 * 16 15 14 18 18 C 1.46902 * 111.00293 * 170.00751 * 16 15 14 19 19 C 1.47198 * 109.47154 * 190.00229 * 18 16 15 20 20 N 8.25479 * 54.94852 * 123.63875 * 2 1 3 21 21 C 1.38264 * 120.04988 * 0.54494 * 14 13 12 22 22 C 1.38174 * 120.02803 * 359.73009 * 21 14 13 23 23 C 1.38446 * 120.01140 * 284.99535 * 12 11 2 24 24 F 1.35102 * 120.02158 * 0.02658 * 23 12 11 25 25 H 1.08997 * 109.47001 * 84.91724 * 1 2 3 26 26 H 1.08997 * 109.47388 * 204.91551 * 1 2 3 27 27 H 1.09000 * 109.47246 * 324.92219 * 1 2 3 28 28 H 0.96994 * 120.00579 * 180.02562 * 6 5 3 29 29 H 1.09008 * 109.47191 * 29.99490 * 11 2 1 30 30 H 1.08996 * 109.47523 * 150.00020 * 11 2 1 31 31 H 1.07996 * 119.98092 * 359.97438 * 13 12 11 32 32 H 1.08999 * 109.47663 * 30.27505 * 15 14 13 33 33 H 1.09006 * 109.47013 * 150.27664 * 15 14 13 34 34 H 1.09000 * 109.46875 * 60.00081 * 17 16 15 35 35 H 1.09004 * 109.46879 * 179.97438 * 17 16 15 36 36 H 1.08994 * 109.47316 * 299.99741 * 17 16 15 37 37 H 1.09004 * 109.46572 * 309.99787 * 18 16 15 38 38 H 1.08998 * 109.47388 * 69.99802 * 18 16 15 39 39 H 1.08002 * 119.98197 * 179.70258 * 21 14 13 40 40 H 1.07997 * 120.01059 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2004 1.2028 0.2495 5 6 1.4947 2.3655 -0.3262 6 7 0.3209 2.3239 -0.9201 7 14 2.2792 4.0119 0.0777 8 1 3.5856 4.1221 -0.6199 9 1 1.3852 5.1096 -0.3705 10 1 2.4911 4.1129 1.5440 11 6 2.1975 -1.2687 -0.0006 12 6 2.4486 -1.7044 1.4200 13 6 1.7048 -2.7314 1.9701 14 6 1.9389 -3.1349 3.2713 15 6 1.1315 -4.2589 3.8676 16 7 -0.0719 -3.7113 4.5078 17 6 0.2802 -2.8804 5.6671 18 6 -0.9989 -4.7844 4.8915 19 6 -2.2840 -4.1980 5.3053 20 7 -3.2758 -3.7434 5.6261 21 6 2.9094 -2.5044 4.0277 22 6 3.6503 -1.4737 3.4819 23 6 3.4206 -1.0723 2.1766 24 9 4.1441 -0.0644 1.6420 25 1 -0.3633 0.0910 -1.0236 26 1 -0.3634 -0.9320 0.4329 27 1 -0.3634 0.8410 0.5906 28 1 -0.1366 3.1481 -1.1484 29 1 1.6084 -2.0282 -0.5147 30 1 3.1499 -1.1382 -0.5143 31 1 0.9433 -3.2214 1.3816 32 1 0.8398 -4.9543 3.0806 33 1 1.7320 -4.7829 4.6113 34 1 0.9110 -2.0528 5.3427 35 1 -0.6290 -2.4873 6.1219 36 1 0.8199 -3.4844 6.3964 37 1 -1.1590 -5.4473 4.0411 38 1 -0.5749 -5.3519 5.7198 39 1 3.0881 -2.8174 5.0458 40 1 4.4080 -0.9811 4.0731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297291672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:05 Heat of formation + Delta-G solvation = 26.030904 kcal Electronic energy + Delta-G solvation = -23007.057361 eV Core-core repulsion = 19543.862632 eV Total energy + Delta-G solvation = -3463.194730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -49.63101 -40.40927 -38.69114 -37.43765 -36.71931 -33.86925 -32.26873 -31.81662 -29.20567 -28.09532 -27.69162 -27.30909 -24.03285 -23.71935 -22.69839 -21.04154 -18.78290 -18.53908 -18.29965 -17.38529 -17.04812 -16.76167 -16.34520 -16.23680 -16.03930 -15.42958 -15.01061 -14.96806 -14.72387 -14.51485 -14.37360 -14.07266 -13.73253 -13.59140 -13.40100 -13.17460 -12.92874 -12.85486 -12.73779 -12.59135 -12.43585 -12.35067 -12.20270 -12.13564 -11.84720 -11.83384 -11.62651 -10.60606 -9.71040 -9.42699 -9.16118 -8.84532 -7.81368 -5.22256 0.34516 0.48980 1.41695 1.44418 1.51167 1.70164 1.87932 2.50026 2.72302 3.12666 3.31676 3.39563 3.62587 3.80652 3.93024 3.96565 4.08001 4.38520 4.40054 4.45343 4.47686 4.61462 4.67918 4.72131 4.82216 4.83911 4.92000 4.95242 5.13997 5.18661 5.27714 5.37401 5.45840 5.59818 5.65459 5.70790 5.77045 6.01067 6.04222 6.18743 6.32441 6.67512 7.17297 7.88998 8.28867 9.22647 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.004455 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.047425 B = 6284.181822 C = 7058.908100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.611 5.611 3 C -0.252 4.252 4 H 0.079 0.921 5 C -0.059 4.059 6 N -0.942 5.942 7 Si 0.958 3.042 8 H -0.275 1.275 9 H -0.292 1.292 10 H -0.285 1.285 11 C 0.183 3.817 12 C -0.143 4.143 13 C -0.068 4.068 14 C -0.092 4.092 15 C 0.108 3.892 16 N -0.560 5.560 17 C 0.018 3.982 18 C 0.150 3.850 19 C 0.238 3.762 20 N -0.502 5.502 21 C -0.083 4.083 22 C -0.168 4.168 23 C 0.081 3.919 24 F -0.156 7.156 25 H 0.003 0.997 26 H 0.029 0.971 27 H 0.015 0.985 28 H 0.245 0.755 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.140 0.860 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.153 0.847 38 H 0.121 0.879 39 H 0.160 0.840 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.796 -20.689 13.670 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.334 5.334 3 C -0.382 4.382 4 H 0.097 0.903 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.787 3.213 8 H -0.201 1.201 9 H -0.218 1.218 10 H -0.212 1.212 11 C 0.058 3.942 12 C -0.146 4.146 13 C -0.088 4.088 14 C -0.093 4.093 15 C -0.018 4.018 16 N -0.285 5.285 17 C -0.130 4.130 18 C 0.021 3.979 19 C -0.079 4.079 20 N -0.180 5.180 21 C -0.102 4.102 22 C -0.187 4.187 23 C 0.061 3.939 24 F -0.135 7.135 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.158 0.842 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.170 0.830 38 H 0.138 0.862 39 H 0.178 0.822 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.993 -19.549 13.702 24.060 hybrid contribution 1.001 1.505 0.096 1.810 sum 3.994 -18.045 13.798 23.064 Atomic orbital electron populations 1.20502 0.82369 0.95835 0.97382 1.44178 1.02169 1.01277 1.85758 1.19761 0.95112 0.85448 1.37865 0.90348 1.25568 0.98251 1.01001 1.00454 1.70267 1.17374 1.26217 1.45172 0.85467 0.77725 0.80263 0.77893 1.20126 1.21798 1.21185 1.19767 0.96044 0.87604 0.90834 1.21057 0.96291 0.97486 0.99782 1.20963 0.97118 0.94857 0.95823 1.19943 0.97012 0.99038 0.93308 1.21077 0.88277 0.92913 0.99490 1.61718 1.15743 1.22000 1.29062 1.22503 1.00662 0.98199 0.91634 1.19947 0.81424 0.91895 1.04669 1.29888 0.94809 0.92097 0.91121 1.81308 1.14906 1.09635 1.12194 1.21126 0.94497 0.94094 1.00447 1.21292 1.03563 1.00864 0.92965 1.18098 0.93965 0.87954 0.93847 1.91415 1.76422 1.58818 1.86813 0.97904 0.95237 0.96580 0.94545 0.90995 0.93815 0.84229 0.86871 0.89854 0.91884 0.93565 0.91862 0.82986 0.86157 0.82222 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.54 8.97 127.77 1.15 10.69 16 2 N -0.61 -31.93 2.92 -731.32 -2.13 -34.07 16 3 C -0.25 -14.57 9.23 84.03 0.78 -13.79 16 4 H 0.08 4.51 5.75 -2.91 -0.02 4.50 16 5 C -0.06 -3.49 5.08 84.86 0.43 -3.06 16 6 N -0.94 -58.31 10.43 21.65 0.23 -58.08 16 7 Si 0.96 48.09 29.58 68.60 2.03 50.12 16 8 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 9 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 10 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 11 C 0.18 7.62 5.50 85.63 0.47 8.10 16 12 C -0.14 -5.03 5.47 -19.82 -0.11 -5.14 16 13 C -0.07 -1.80 9.32 22.26 0.21 -1.59 16 14 C -0.09 -1.77 4.88 -19.86 -0.10 -1.87 16 15 C 0.11 1.04 5.12 85.56 0.44 1.48 16 16 N -0.56 -7.26 4.73 -938.23 -4.44 -11.70 16 17 C 0.02 0.26 8.96 127.69 1.14 1.40 16 18 C 0.15 1.03 5.46 84.50 0.46 1.49 16 19 C 0.24 4.24 14.47 89.43 1.29 5.54 16 20 N -0.50 -13.31 18.55 20.02 0.37 -12.94 16 21 C -0.08 -1.62 7.96 22.26 0.18 -1.44 16 22 C -0.17 -4.57 10.03 22.31 0.22 -4.35 16 23 C 0.08 2.96 7.21 22.38 0.16 3.12 16 24 F -0.16 -6.75 14.22 44.97 0.64 -6.11 16 25 H 0.00 0.15 7.53 -2.39 -0.02 0.13 16 26 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 27 H 0.02 0.90 6.89 -2.39 -0.02 0.89 16 28 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.07 2.61 7.89 -2.38 -0.02 2.59 16 30 H 0.04 1.90 7.98 -2.39 -0.02 1.88 16 31 H 0.14 3.20 8.00 -2.91 -0.02 3.18 16 32 H 0.11 0.64 7.88 -2.39 -0.02 0.62 16 33 H 0.08 0.32 8.06 -2.38 -0.02 0.30 16 34 H 0.06 1.17 6.17 -2.39 -0.01 1.16 16 35 H 0.05 0.83 7.17 -2.38 -0.02 0.82 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 37 H 0.15 0.18 7.93 -2.39 -0.02 0.16 16 38 H 0.12 -0.01 8.12 -2.39 -0.02 -0.03 16 39 H 0.16 1.86 8.03 -2.91 -0.02 1.84 16 40 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -79.47 339.35 4.47 -75.01 By element: Atomic # 1 Polarization: -3.84 SS G_CDS: 1.04 Total: -2.79 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 6.73 Total: 0.57 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -5.97 Total: -116.79 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.64 Total: -6.11 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -79.47 4.47 -75.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297291672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.036 kcal (2) G-P(sol) polarization free energy of solvation -79.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds