Wall clock time and date at job start Tue Mar 31 2020 07:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99591 * 2 1 4 4 C 1.50708 * 109.47034 * 179.97438 * 3 2 1 5 5 C 1.39257 * 119.78084 * 0.02562 * 4 3 2 6 6 C 1.38153 * 119.01310 * 179.97438 * 5 4 3 7 7 N 1.37719 * 120.64289 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47237 * 179.72048 * 8 7 6 10 10 C 1.52996 * 109.46929 * 179.97438 * 9 8 7 11 11 C 1.50709 * 109.47079 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99331 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00242 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00070 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00390 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46949 * 59.99946 * 15 13 11 17 17 H 1.48496 * 109.47648 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47026 * 300.00228 * 15 13 11 19 19 N 1.36508 * 118.71456 * 0.24820 * 6 5 4 20 20 N 1.40065 * 133.37292 * 180.41879 * 19 6 5 21 21 C 1.31065 * 107.03777 * 179.51033 * 20 19 6 22 22 N 1.32725 * 109.62872 * 359.77756 * 21 20 19 23 23 C 1.32860 * 109.73973 * 359.97438 * 22 21 20 24 24 N 1.31645 * 119.78490 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.46965 * 60.00661 * 1 2 3 26 26 H 1.08998 * 109.46887 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47451 * 300.00215 * 1 2 3 28 28 H 1.08998 * 109.47586 * 59.99784 * 3 2 1 29 29 H 1.09001 * 109.47246 * 299.99487 * 3 2 1 30 30 H 1.08004 * 120.49151 * 0.02562 * 5 4 3 31 31 H 0.97005 * 120.00070 * 179.72429 * 7 6 5 32 32 H 1.09001 * 109.46512 * 299.72417 * 8 7 6 33 33 H 1.08998 * 109.47174 * 59.71539 * 8 7 6 34 34 H 1.09000 * 109.46986 * 299.99958 * 9 8 7 35 35 H 1.09002 * 109.46857 * 60.00093 * 9 8 7 36 36 H 1.09000 * 109.47441 * 299.99910 * 10 9 8 37 37 H 1.08994 * 109.47235 * 60.00181 * 10 9 8 38 38 H 0.96994 * 120.00439 * 179.97438 * 14 13 11 39 39 H 1.07997 * 125.18851 * 179.77636 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.1067 -0.0729 0.0006 6 6 5.4852 -0.1634 0.0006 7 7 6.1080 -1.3918 0.0011 8 6 5.3076 -2.6189 0.0010 9 6 6.2372 -3.8341 -0.0055 10 6 5.4013 -5.1155 -0.0050 11 6 6.3169 -6.3126 -0.0107 12 1 7.3879 -6.1731 -0.0139 13 6 5.7874 -7.5855 -0.0107 14 7 4.4832 -7.7553 -0.0063 15 14 6.9222 -9.0692 -0.0185 16 1 7.7843 -9.0394 1.1902 17 1 6.1110 -10.3130 -0.0179 18 1 7.7736 -9.0348 -1.2348 19 7 6.2182 0.9882 0.0059 20 7 7.5935 1.2531 0.0001 21 6 7.7336 2.5563 -0.0006 22 7 6.5383 3.1332 -0.0004 23 6 5.5906 2.2020 -0.0002 24 7 4.2546 2.2740 0.0002 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8465 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.4988 -0.9656 -0.0004 31 1 7.0766 -1.4445 -0.0029 32 1 4.6820 -2.6446 0.8932 33 1 4.6754 -2.6402 -0.8867 34 1 6.8628 -3.8082 -0.8977 35 1 6.8693 -3.8127 0.8823 36 1 4.7760 -5.1411 0.8875 37 1 4.7689 -5.1371 -0.8924 38 1 4.1106 -8.6508 -0.0067 39 1 8.6777 3.0807 -0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301168567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:40 Heat of formation + Delta-G solvation = 83.128265 kcal Electronic energy + Delta-G solvation = -22266.631216 eV Core-core repulsion = 18825.832376 eV Total energy + Delta-G solvation = -3440.798841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.82274 -39.37795 -38.10040 -37.00681 -34.52734 -33.11559 -31.72861 -31.34225 -29.85228 -28.31121 -26.91482 -26.13580 -24.35430 -22.96826 -22.64024 -21.43898 -20.68749 -18.77903 -17.91259 -17.05318 -16.79730 -16.47961 -16.23410 -16.08894 -15.30116 -15.09072 -15.03807 -14.66507 -14.51317 -13.75842 -13.49719 -13.04533 -12.84663 -12.57084 -12.37536 -12.10069 -11.96683 -11.77416 -11.65891 -10.97921 -10.94293 -10.70473 -10.19996 -10.16289 -10.12396 -9.98664 -9.77549 -9.63589 -9.45454 -9.28531 -8.47442 -7.91691 -6.12546 -4.16082 0.60946 0.84040 1.67258 2.59181 2.78714 2.94635 3.25958 3.31050 3.33195 3.43248 3.86436 4.05501 4.35798 4.50604 4.71215 4.89543 5.00986 5.07472 5.17627 5.19661 5.23680 5.31462 5.39095 5.47086 5.48930 5.51072 5.78284 5.91036 6.19757 6.28841 6.30853 6.34344 6.75084 6.75309 6.78521 7.14999 7.47636 7.58100 7.58404 7.84515 7.95760 8.24938 8.89579 9.48999 10.98565 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.003459 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.006464 B = 8091.890470 C = 9952.535059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.114 3.886 4 C 0.264 3.736 5 C -0.305 4.305 6 C 0.489 3.511 7 N -0.694 5.694 8 C 0.113 3.887 9 C -0.122 4.122 10 C 0.027 3.973 11 C -0.527 4.527 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 N -0.364 5.364 20 N -0.354 5.354 21 C 0.254 3.746 22 N -0.545 5.545 23 C 0.490 3.510 24 N -0.517 5.517 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.178 0.822 31 H 0.415 0.585 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.263 0.737 39 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 17.699 0.007 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.037 3.963 4 C 0.107 3.893 5 C -0.338 4.338 6 C 0.261 3.739 7 N -0.319 5.319 8 C -0.009 4.009 9 C -0.160 4.160 10 C -0.011 4.011 11 C -0.565 4.565 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 N -0.150 5.150 20 N -0.185 5.185 21 C -0.048 4.048 22 N -0.280 5.280 23 C 0.129 3.871 24 N -0.241 5.241 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.195 0.805 31 H 0.252 0.748 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.484 18.004 0.017 18.554 hybrid contribution 1.117 -1.512 -0.008 1.880 sum -3.367 16.492 0.009 16.832 Atomic orbital electron populations 1.22811 0.79682 1.03577 1.00241 1.87871 1.20529 1.26110 1.95607 1.20960 0.86527 0.85832 1.03006 1.20913 0.95573 0.87240 0.85538 1.21131 0.88981 1.01603 1.22132 1.18196 0.88471 0.78881 0.88320 1.45193 1.10909 1.02261 1.73533 1.22122 0.94954 0.81084 1.02721 1.21936 0.98492 0.94082 1.01517 1.19019 0.94987 0.89272 0.97814 1.21126 0.92992 0.90856 1.51500 0.92668 1.25001 0.95064 0.99139 0.95048 1.69936 1.10512 1.22513 1.50211 0.86630 0.80642 0.81902 0.78682 1.20193 1.21179 1.20197 1.48855 1.07568 1.07353 1.51234 1.78322 0.88217 1.17744 1.34214 1.26143 0.97402 0.88263 0.93001 1.70935 0.97061 1.27880 1.32150 1.22608 0.90613 0.79880 0.94002 1.67436 0.99341 1.30324 1.27040 0.93683 0.88833 0.93675 0.89683 0.89673 0.80476 0.74760 0.90461 0.90472 0.92318 0.92316 0.96062 0.96060 0.92758 0.75566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.68 9.19 -35.23 -0.32 -4.01 16 3 C 0.11 1.03 6.48 36.01 0.23 1.26 16 4 C 0.26 3.30 6.81 -82.29 -0.56 2.74 16 5 C -0.31 -3.95 8.65 -39.23 -0.34 -4.29 16 6 C 0.49 6.97 7.76 -152.98 -1.19 5.78 16 7 N -0.69 -9.44 5.68 -60.01 -0.34 -9.78 16 8 C 0.11 1.62 4.91 -4.04 -0.02 1.60 16 9 C -0.12 -2.16 5.27 -26.73 -0.14 -2.31 16 10 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 11 C -0.53 -14.04 9.11 -34.44 -0.31 -14.36 16 12 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 15 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 N -0.36 -5.61 3.93 -12.98 -0.05 -5.66 16 20 N -0.35 -5.22 12.76 29.26 0.37 -4.84 16 21 C 0.25 3.28 12.98 -91.97 -1.19 2.08 16 22 N -0.55 -8.53 11.26 -15.66 -0.18 -8.71 16 23 C 0.49 7.89 9.00 -323.15 -2.91 4.98 16 24 N -0.52 -7.67 10.38 -10.18 -0.11 -7.77 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.18 2.15 5.77 -52.48 -0.30 1.85 16 31 H 0.42 5.58 8.58 -40.82 -0.35 5.23 16 32 H 0.08 1.07 7.97 -51.93 -0.41 0.66 16 33 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.23 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -32.21 337.39 -10.62 -42.83 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.25 Total: 1.03 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -5.55 Total: 0.83 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.44 Total: -61.61 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.32 Total: -4.01 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.21 -10.62 -42.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301168567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.962 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds