Wall clock time and date at job start Tue Mar 31 2020 07:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99591 * 2 1 4 4 C 1.50708 * 109.47034 * 179.97438 * 3 2 1 5 5 C 1.39257 * 119.78084 * 0.02562 * 4 3 2 6 6 C 1.38153 * 119.01310 * 179.97438 * 5 4 3 7 7 N 1.37719 * 120.64289 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.47237 * 179.72048 * 8 7 6 10 10 C 1.52996 * 109.46929 * 179.97438 * 9 8 7 11 11 C 1.50709 * 109.47079 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99331 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00242 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00070 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00390 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46949 * 59.99946 * 15 13 11 17 17 H 1.48496 * 109.47648 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47026 * 300.00228 * 15 13 11 19 19 N 1.36508 * 118.71456 * 0.24820 * 6 5 4 20 20 N 1.40065 * 133.37292 * 180.41879 * 19 6 5 21 21 C 1.31065 * 107.03777 * 179.51033 * 20 19 6 22 22 N 1.32725 * 109.62872 * 359.77756 * 21 20 19 23 23 C 1.32860 * 109.73973 * 359.97438 * 22 21 20 24 24 N 1.31645 * 119.78490 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.46965 * 60.00661 * 1 2 3 26 26 H 1.08998 * 109.46887 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47451 * 300.00215 * 1 2 3 28 28 H 1.08998 * 109.47586 * 59.99784 * 3 2 1 29 29 H 1.09001 * 109.47246 * 299.99487 * 3 2 1 30 30 H 1.08004 * 120.49151 * 0.02562 * 5 4 3 31 31 H 0.97005 * 120.00070 * 179.72429 * 7 6 5 32 32 H 1.09001 * 109.46512 * 299.72417 * 8 7 6 33 33 H 1.08998 * 109.47174 * 59.71539 * 8 7 6 34 34 H 1.09000 * 109.46986 * 299.99958 * 9 8 7 35 35 H 1.09002 * 109.46857 * 60.00093 * 9 8 7 36 36 H 1.09000 * 109.47441 * 299.99910 * 10 9 8 37 37 H 1.08994 * 109.47235 * 60.00181 * 10 9 8 38 38 H 0.96994 * 120.00439 * 179.97438 * 14 13 11 39 39 H 1.07997 * 125.18851 * 179.77636 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.1067 -0.0729 0.0006 6 6 5.4852 -0.1634 0.0006 7 7 6.1080 -1.3918 0.0011 8 6 5.3076 -2.6189 0.0010 9 6 6.2372 -3.8341 -0.0055 10 6 5.4013 -5.1155 -0.0050 11 6 6.3169 -6.3126 -0.0107 12 1 7.3879 -6.1731 -0.0139 13 6 5.7874 -7.5855 -0.0107 14 7 4.4832 -7.7553 -0.0063 15 14 6.9222 -9.0692 -0.0185 16 1 7.7843 -9.0394 1.1902 17 1 6.1110 -10.3130 -0.0179 18 1 7.7736 -9.0348 -1.2348 19 7 6.2182 0.9882 0.0059 20 7 7.5935 1.2531 0.0001 21 6 7.7336 2.5563 -0.0006 22 7 6.5383 3.1332 -0.0004 23 6 5.5906 2.2020 -0.0002 24 7 4.2546 2.2740 0.0002 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8465 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.4988 -0.9656 -0.0004 31 1 7.0766 -1.4445 -0.0029 32 1 4.6820 -2.6446 0.8932 33 1 4.6754 -2.6402 -0.8867 34 1 6.8628 -3.8082 -0.8977 35 1 6.8693 -3.8127 0.8823 36 1 4.7760 -5.1411 0.8875 37 1 4.7689 -5.1371 -0.8924 38 1 4.1106 -8.6508 -0.0067 39 1 8.6777 3.0807 -0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301168567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:40 Heat of formation + Delta-G solvation = 65.391036 kcal Electronic energy + Delta-G solvation = -22267.400360 eV Core-core repulsion = 18825.832376 eV Total energy + Delta-G solvation = -3441.567985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.89160 -40.37105 -38.95107 -38.01979 -36.05082 -34.66933 -33.02234 -32.59253 -31.02069 -29.13266 -28.50254 -26.76540 -25.74050 -24.37903 -23.58168 -22.53194 -22.25204 -19.88955 -18.96783 -18.47568 -17.99413 -17.85016 -16.93843 -16.76554 -16.58507 -16.39664 -16.17709 -16.12846 -15.56412 -14.76669 -14.46376 -14.27642 -14.20393 -13.98286 -13.60138 -13.37012 -13.20942 -12.89582 -12.72269 -12.58632 -12.44063 -12.22454 -11.75548 -11.55011 -11.30274 -11.23067 -11.01632 -10.97311 -10.82602 -10.54349 -10.39470 -9.00878 -8.20515 -6.30565 -0.42436 -0.23378 0.60040 1.41680 1.42746 1.50708 1.57420 1.75396 2.02333 2.36456 2.41227 3.05178 3.08181 3.13893 3.56183 3.82583 3.92875 4.10478 4.12472 4.28973 4.41517 4.42434 4.50124 4.58708 4.68099 4.71559 4.80976 4.86600 4.96819 5.03202 5.10556 5.21778 5.31481 5.48973 5.60915 5.70243 5.83668 6.05253 6.16895 6.22979 6.52170 6.85608 6.89529 7.38679 8.90681 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.003459 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.006464 B = 8091.890470 C = 9952.535059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.117 3.883 4 C 0.264 3.736 5 C -0.302 4.302 6 C 0.478 3.522 7 N -0.691 5.691 8 C 0.129 3.871 9 C -0.107 4.107 10 C 0.029 3.971 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.005 3.995 14 N -0.928 5.928 15 Si 0.958 3.042 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.269 1.269 19 N -0.371 5.371 20 N -0.374 5.374 21 C 0.261 3.739 22 N -0.569 5.569 23 C 0.470 3.530 24 N -0.530 5.530 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.186 0.814 31 H 0.416 0.584 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.264 0.736 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.535 18.239 0.003 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C 0.040 3.960 4 C 0.109 3.891 5 C -0.335 4.335 6 C 0.251 3.749 7 N -0.316 5.316 8 C 0.006 3.994 9 C -0.145 4.145 10 C -0.009 4.009 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.783 3.217 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.157 5.157 20 N -0.205 5.205 21 C -0.040 4.040 22 N -0.305 5.305 23 C 0.110 3.890 24 N -0.256 5.256 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.203 0.797 31 H 0.253 0.747 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.073 0.927 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -4.248 18.549 0.012 19.029 hybrid contribution 0.992 -1.634 -0.007 1.911 sum -3.256 16.915 0.006 17.226 Atomic orbital electron populations 1.22985 0.78100 1.04157 1.01597 1.87830 1.22256 1.26448 1.95849 1.21081 0.84150 0.86081 1.04652 1.21480 0.97193 0.86515 0.83937 1.21327 0.88588 1.02244 1.21341 1.18372 0.88880 0.78756 0.88923 1.44944 1.10787 1.01858 1.74058 1.21817 0.94034 0.80116 1.03388 1.21624 0.98134 0.92981 1.01767 1.18895 0.94787 0.91286 0.95953 1.21632 0.93713 0.92236 1.50843 0.92326 1.25864 0.96485 1.02237 0.94803 1.70054 1.12219 1.23161 1.51380 0.85601 0.78750 0.78280 0.79028 1.19410 1.20929 1.19421 1.48913 1.07843 1.07434 1.51545 1.78282 0.88117 1.18832 1.35274 1.27034 0.98176 0.87801 0.91037 1.70942 0.97935 1.28474 1.33127 1.22941 0.91273 0.80339 0.94492 1.67513 0.99054 1.31205 1.27817 0.92328 0.88715 0.92320 0.87852 0.87838 0.79709 0.74653 0.89865 0.89864 0.92056 0.92063 0.97891 0.97883 0.92721 0.71295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -7.10 9.19 -148.98 -1.37 -8.47 16 3 C 0.12 1.89 6.48 71.24 0.46 2.35 16 4 C 0.26 6.31 6.81 42.83 0.29 6.60 16 5 C -0.30 -7.54 8.65 22.49 0.19 -7.34 16 6 C 0.48 13.28 7.76 131.99 1.02 14.30 16 7 N -0.69 -18.21 5.68 -343.76 -1.95 -20.17 16 8 C 0.13 3.57 4.91 86.38 0.42 4.00 16 9 C -0.11 -3.73 5.27 30.59 0.16 -3.57 16 10 C 0.03 1.35 4.97 29.85 0.15 1.49 16 11 C -0.55 -29.17 9.11 25.60 0.23 -28.94 16 12 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 13 C 0.00 0.25 5.46 84.65 0.46 0.71 16 14 N -0.93 -53.73 13.29 21.45 0.28 -53.44 16 15 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 N -0.37 -11.24 3.93 -194.98 -0.77 -12.01 16 20 N -0.37 -10.70 12.76 -61.36 -0.78 -11.48 16 21 C 0.26 6.37 12.98 180.82 2.35 8.72 16 22 N -0.57 -17.38 11.26 -203.47 -2.29 -19.67 16 23 C 0.47 14.92 9.00 261.61 2.35 17.28 16 24 N -0.53 -15.33 10.38 -186.12 -1.93 -17.27 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.19 4.28 5.77 -2.91 -0.02 4.26 16 31 H 0.42 10.86 8.58 -92.70 -0.80 10.06 16 32 H 0.08 2.24 7.97 -2.39 -0.02 2.22 16 33 H 0.08 2.23 7.94 -2.39 -0.02 2.21 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 39 H 0.27 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -69.18 337.39 2.85 -66.33 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.28 Total: 14.47 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 9.35 Total: 17.14 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -7.44 Total: -134.04 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -1.37 Total: -8.47 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -69.18 2.85 -66.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301168567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.718 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds