Wall clock time and date at job start Tue Mar 31 2020 06:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00206 * 2 1 4 4 C 1.50699 * 109.47103 * 179.97438 * 3 2 1 5 5 C 1.39254 * 119.78420 * 359.97438 * 4 3 2 6 6 C 1.38159 * 119.01501 * 180.29173 * 5 4 3 7 7 N 1.37719 * 120.64452 * 179.68621 * 6 5 4 8 8 C 1.46901 * 111.00102 * 122.40391 * 7 6 5 9 9 C 1.46900 * 110.99895 * 358.45672 * 7 6 5 10 10 H 1.09000 * 109.47204 * 311.11022 * 9 7 6 11 11 C 1.52999 * 109.47265 * 191.11327 * 9 7 6 12 12 C 1.50696 * 109.47367 * 71.10982 * 9 7 6 13 13 H 1.08001 * 120.00261 * 0.02562 * 12 9 7 14 14 C 1.37877 * 120.00102 * 180.02562 * 12 9 7 15 15 N 1.31515 * 120.00060 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00115 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47046 * 60.00022 * 16 14 12 18 18 H 1.48501 * 109.46966 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47141 * 300.00144 * 16 14 12 20 20 N 1.36508 * 118.71351 * 359.47049 * 6 5 4 21 21 N 1.40066 * 133.37729 * 180.21889 * 20 6 5 22 22 C 1.31070 * 107.03868 * 180.28603 * 21 20 6 23 23 N 1.32733 * 109.62280 * 0.02562 * 22 21 20 24 24 C 1.32857 * 109.74435 * 359.97438 * 23 22 21 25 25 N 1.31651 * 119.78669 * 180.02562 * 4 3 2 26 26 H 1.08998 * 109.47421 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47247 * 300.00473 * 1 2 3 28 28 H 1.09009 * 109.47024 * 60.00168 * 1 2 3 29 29 H 1.08999 * 109.47181 * 59.99761 * 3 2 1 30 30 H 1.08998 * 109.46979 * 299.99889 * 3 2 1 31 31 H 1.07994 * 120.49309 * 0.02562 * 5 4 3 32 32 H 1.09009 * 109.46687 * 60.00634 * 8 7 6 33 33 H 1.08997 * 109.47356 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47614 * 300.00368 * 8 7 6 35 35 H 1.09009 * 109.47208 * 53.46303 * 11 9 7 36 36 H 1.08993 * 109.47297 * 173.46654 * 11 9 7 37 37 H 1.09003 * 109.46763 * 293.46811 * 11 9 7 38 38 H 0.96998 * 120.00218 * 179.97438 * 15 14 12 39 39 H 1.07991 * 125.18397 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1066 -0.0731 0.0016 6 6 5.4852 -0.1637 0.0084 7 7 6.1079 -1.3921 0.0161 8 6 7.0068 -1.5339 -1.1371 9 6 5.1229 -2.4813 0.0527 10 1 4.3932 -2.2851 0.8383 11 6 5.8362 -3.8045 0.3383 12 6 4.4189 -2.5670 -1.2769 13 1 4.6775 -1.8811 -2.0701 14 6 3.4445 -3.5209 -1.4809 15 7 3.1292 -4.3558 -0.5149 16 14 2.5722 -3.6275 -3.1293 17 1 3.5667 -3.8960 -4.1991 18 1 1.5756 -4.7278 -3.0917 19 1 1.8807 -2.3432 -3.4073 20 7 6.2182 0.9879 0.0027 21 7 7.5936 1.2527 0.0028 22 6 7.7337 2.5559 0.0019 23 7 6.5383 3.1328 0.0018 24 6 5.5906 2.2017 0.0021 25 7 4.2548 2.2737 0.0013 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.4988 -0.9657 0.0016 32 1 7.7691 -0.7554 -1.1015 33 1 7.4858 -2.5125 -1.1063 34 1 6.4331 -1.4387 -2.0590 35 1 6.4392 -3.7048 1.2409 36 1 5.0967 -4.5925 0.4805 37 1 6.4808 -4.0586 -0.5031 38 1 2.4434 -5.0267 -0.6582 39 1 8.6778 3.0802 0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301542246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:31 Heat of formation + Delta-G solvation = 117.869856 kcal Electronic energy + Delta-G solvation = -24339.092190 eV Core-core repulsion = 20899.799858 eV Total energy + Delta-G solvation = -3439.292332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.41043 -39.25642 -38.04447 -36.87997 -33.89342 -32.42358 -31.25615 -30.02180 -29.20055 -28.05864 -25.91899 -25.51037 -25.30049 -23.72431 -21.95868 -21.45599 -19.80000 -17.91586 -17.37594 -16.81040 -16.37006 -16.14879 -15.76205 -15.63317 -15.26219 -14.56445 -14.26190 -13.84117 -13.69367 -13.22485 -13.07969 -12.81556 -12.28513 -12.17596 -11.73997 -11.67604 -11.43317 -11.25765 -11.21469 -11.10823 -10.87286 -10.69876 -10.37094 -10.23180 -9.74224 -9.70409 -9.62968 -9.46246 -9.08308 -8.65444 -8.64619 -7.44934 -6.27762 -4.39743 0.93819 1.31818 2.28338 3.01306 3.17421 3.22064 3.25568 3.26172 3.82865 4.17937 4.22520 4.30003 4.58075 4.99088 5.03789 5.16499 5.28299 5.37279 5.44311 5.53963 5.74096 5.83625 5.84474 6.03169 6.11450 6.18414 6.35079 6.39682 6.53858 6.68080 6.70575 6.78365 6.96689 7.12260 7.23640 7.37358 7.46557 7.69634 7.73379 7.93821 8.00238 8.38529 8.60709 9.28196 10.75164 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.007661 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.747326 B = 3654.141218 C = 5053.244232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.116 3.884 4 C 0.237 3.763 5 C -0.242 4.242 6 C 0.412 3.588 7 N -0.480 5.480 8 C 0.034 3.966 9 C 0.204 3.796 10 H 0.057 0.943 11 C -0.130 4.130 12 C -0.554 4.554 13 H 0.060 0.940 14 C 0.083 3.917 15 N -0.877 5.877 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 N -0.334 5.334 21 N -0.345 5.345 22 C 0.239 3.761 23 N -0.552 5.552 24 C 0.467 3.533 25 N -0.506 5.506 26 H 0.091 0.909 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.210 0.790 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.020 0.980 36 H 0.092 0.908 37 H 0.035 0.965 38 H 0.267 0.733 39 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 6.160 0.677 6.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.287 6.287 3 C 0.038 3.962 4 C 0.080 3.920 5 C -0.271 4.271 6 C 0.192 3.808 7 N -0.193 5.193 8 C -0.111 4.111 9 C 0.101 3.899 10 H 0.075 0.925 11 C -0.188 4.188 12 C -0.592 4.592 13 H 0.078 0.922 14 C -0.122 4.122 15 N -0.513 5.513 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.197 1.197 20 N -0.116 5.116 21 N -0.177 5.177 22 C -0.064 4.064 23 N -0.288 5.288 24 C 0.107 3.893 25 N -0.229 5.229 26 H 0.109 0.891 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.227 0.773 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.039 0.961 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.831 6.516 1.142 6.668 hybrid contribution -0.732 -0.673 -1.419 1.733 sum -1.564 5.844 -0.278 6.056 Atomic orbital electron populations 1.22763 0.80409 1.03326 0.99675 1.88030 1.19853 1.25427 1.95430 1.20899 0.86818 0.86091 1.02370 1.21187 0.95654 0.87916 0.87228 1.22618 0.90921 1.02102 1.11463 1.19550 0.88382 0.83480 0.89413 1.58505 1.21852 1.00262 1.38659 1.22418 0.95295 1.03429 0.89912 1.19802 0.87429 0.84564 0.98153 0.92494 1.21815 0.99894 0.99496 0.97604 1.21369 1.21550 1.17949 0.98313 0.92153 1.24766 0.95983 0.94693 0.96793 1.69854 1.30914 1.18581 1.31940 0.86628 0.79531 0.78064 0.83813 1.20316 1.21015 1.19716 1.48802 1.07108 1.07652 1.48042 1.78360 0.88996 1.16850 1.33470 1.26087 0.97220 0.88746 0.94297 1.70852 0.97036 1.28241 1.32624 1.22515 0.90583 0.80471 0.95745 1.67359 0.99666 1.30906 1.24935 0.89058 0.94028 0.94066 0.90130 0.90203 0.77313 0.91069 0.89912 0.93054 0.96141 0.88953 0.94593 0.92303 0.76089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -5.88 9.19 -35.23 -0.32 -6.20 16 3 C 0.12 1.67 6.48 36.01 0.23 1.90 16 4 C 0.24 4.33 6.81 -82.29 -0.56 3.77 16 5 C -0.24 -4.90 7.49 -39.23 -0.29 -5.19 16 6 C 0.41 8.66 6.22 -152.98 -0.95 7.71 16 7 N -0.48 -10.07 4.77 -174.28 -0.83 -10.90 16 8 C 0.03 0.66 8.72 60.07 0.52 1.19 16 9 C 0.20 4.56 1.87 -68.87 -0.13 4.43 16 10 H 0.06 1.37 6.69 -51.93 -0.35 1.03 16 11 C -0.13 -2.81 8.66 37.16 0.32 -2.49 16 12 C -0.55 -13.08 5.43 -34.44 -0.19 -13.27 16 13 H 0.06 1.47 6.14 -52.49 -0.32 1.15 16 14 C 0.08 2.00 5.30 -17.82 -0.09 1.91 16 15 N -0.88 -21.83 11.40 55.43 0.63 -21.20 16 16 Si 0.89 19.34 29.54 -169.99 -5.02 14.32 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 N -0.33 -6.90 3.76 -12.98 -0.05 -6.95 16 21 N -0.35 -6.59 11.02 29.26 0.32 -6.26 16 22 C 0.24 3.96 12.98 -91.96 -1.19 2.77 16 23 N -0.55 -10.74 11.26 -15.67 -0.18 -10.91 16 24 C 0.47 9.67 9.00 -323.17 -2.91 6.77 16 25 N -0.51 -9.92 10.38 -10.18 -0.11 -10.03 16 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.21 4.59 3.94 -52.49 -0.21 4.38 16 32 H 0.07 1.34 6.30 -51.92 -0.33 1.02 16 33 H 0.08 1.52 6.48 -51.93 -0.34 1.18 16 34 H 0.05 1.04 6.23 -51.93 -0.32 0.72 16 35 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.09 2.16 6.28 -51.93 -0.33 1.83 16 37 H 0.03 0.75 6.81 -51.93 -0.35 0.40 16 38 H 0.27 6.42 8.31 -40.82 -0.34 6.09 16 39 H 0.22 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -28.22 316.71 -9.54 -37.76 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.64 Total: 4.58 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -4.12 Total: 11.01 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -0.21 Total: -66.26 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.32 Total: -6.20 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.22 -9.54 -37.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301542246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.634 kcal (2) G-P(sol) polarization free energy of solvation -28.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds