Wall clock time and date at job start Tue Mar 31 2020 06:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00206 * 2 1 4 4 C 1.50699 * 109.47103 * 179.97438 * 3 2 1 5 5 C 1.39254 * 119.78420 * 359.97438 * 4 3 2 6 6 C 1.38159 * 119.01501 * 180.29173 * 5 4 3 7 7 N 1.37719 * 120.64452 * 179.68621 * 6 5 4 8 8 C 1.46901 * 111.00102 * 122.40391 * 7 6 5 9 9 C 1.46900 * 110.99895 * 358.45672 * 7 6 5 10 10 H 1.09000 * 109.47204 * 311.11022 * 9 7 6 11 11 C 1.52999 * 109.47265 * 191.11327 * 9 7 6 12 12 C 1.50696 * 109.47367 * 71.10982 * 9 7 6 13 13 H 1.08001 * 120.00261 * 0.02562 * 12 9 7 14 14 C 1.37877 * 120.00102 * 180.02562 * 12 9 7 15 15 N 1.31515 * 120.00060 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 120.00115 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47046 * 60.00022 * 16 14 12 18 18 H 1.48501 * 109.46966 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47141 * 300.00144 * 16 14 12 20 20 N 1.36508 * 118.71351 * 359.47049 * 6 5 4 21 21 N 1.40066 * 133.37729 * 180.21889 * 20 6 5 22 22 C 1.31070 * 107.03868 * 180.28603 * 21 20 6 23 23 N 1.32733 * 109.62280 * 0.02562 * 22 21 20 24 24 C 1.32857 * 109.74435 * 359.97438 * 23 22 21 25 25 N 1.31651 * 119.78669 * 180.02562 * 4 3 2 26 26 H 1.08998 * 109.47421 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47247 * 300.00473 * 1 2 3 28 28 H 1.09009 * 109.47024 * 60.00168 * 1 2 3 29 29 H 1.08999 * 109.47181 * 59.99761 * 3 2 1 30 30 H 1.08998 * 109.46979 * 299.99889 * 3 2 1 31 31 H 1.07994 * 120.49309 * 0.02562 * 5 4 3 32 32 H 1.09009 * 109.46687 * 60.00634 * 8 7 6 33 33 H 1.08997 * 109.47356 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47614 * 300.00368 * 8 7 6 35 35 H 1.09009 * 109.47208 * 53.46303 * 11 9 7 36 36 H 1.08993 * 109.47297 * 173.46654 * 11 9 7 37 37 H 1.09003 * 109.46763 * 293.46811 * 11 9 7 38 38 H 0.96998 * 120.00218 * 179.97438 * 15 14 12 39 39 H 1.07991 * 125.18397 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1066 -0.0731 0.0016 6 6 5.4852 -0.1637 0.0084 7 7 6.1079 -1.3921 0.0161 8 6 7.0068 -1.5339 -1.1371 9 6 5.1229 -2.4813 0.0527 10 1 4.3932 -2.2851 0.8383 11 6 5.8362 -3.8045 0.3383 12 6 4.4189 -2.5670 -1.2769 13 1 4.6775 -1.8811 -2.0701 14 6 3.4445 -3.5209 -1.4809 15 7 3.1292 -4.3558 -0.5149 16 14 2.5722 -3.6275 -3.1293 17 1 3.5667 -3.8960 -4.1991 18 1 1.5756 -4.7278 -3.0917 19 1 1.8807 -2.3432 -3.4073 20 7 6.2182 0.9879 0.0027 21 7 7.5936 1.2527 0.0028 22 6 7.7337 2.5559 0.0019 23 7 6.5383 3.1328 0.0018 24 6 5.5906 2.2017 0.0021 25 7 4.2548 2.2737 0.0013 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 1.6886 1.8464 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.4988 -0.9657 0.0016 32 1 7.7691 -0.7554 -1.1015 33 1 7.4858 -2.5125 -1.1063 34 1 6.4331 -1.4387 -2.0590 35 1 6.4392 -3.7048 1.2409 36 1 5.0967 -4.5925 0.4805 37 1 6.4808 -4.0586 -0.5031 38 1 2.4434 -5.0267 -0.6582 39 1 8.6778 3.0802 0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301542246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:30 Heat of formation + Delta-G solvation = 103.230657 kcal Electronic energy + Delta-G solvation = -24339.726994 eV Core-core repulsion = 20899.799858 eV Total energy + Delta-G solvation = -3439.927136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.89861 -40.78481 -39.40166 -38.20688 -35.55554 -34.12224 -32.65496 -31.56200 -30.92852 -29.30019 -27.33841 -27.20930 -26.61121 -25.25039 -23.35481 -22.99613 -21.47446 -19.38773 -18.86043 -18.56356 -17.90689 -17.65401 -16.96028 -16.81488 -16.74344 -16.09542 -15.57758 -15.44952 -15.37872 -14.66420 -14.45213 -14.24057 -13.88258 -13.46867 -13.39483 -13.09299 -12.99094 -12.84816 -12.77559 -12.60535 -12.44193 -12.21129 -12.08397 -12.02864 -11.40363 -11.21109 -10.99700 -10.86041 -10.54595 -10.47919 -10.21700 -9.06044 -8.13090 -6.29260 -0.56226 -0.19607 0.76723 1.43578 1.46387 1.51613 1.60789 1.96352 2.32909 2.41851 2.65595 3.10372 3.15738 3.17120 3.61796 3.85940 4.06865 4.26104 4.33763 4.38016 4.46758 4.54233 4.62135 4.67268 4.69239 4.76467 4.86634 4.90865 4.96646 4.97947 5.03277 5.28059 5.38123 5.41243 5.61538 5.72519 5.90170 5.99582 6.14929 6.21028 6.48200 6.74034 6.92552 7.39906 8.88744 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.007661 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.747326 B = 3654.141218 C = 5053.244232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.118 3.882 4 C 0.242 3.758 5 C -0.250 4.250 6 C 0.396 3.604 7 N -0.484 5.484 8 C 0.042 3.958 9 C 0.213 3.787 10 H 0.035 0.965 11 C -0.120 4.120 12 C -0.549 4.549 13 H 0.050 0.950 14 C 0.049 3.951 15 N -0.897 5.897 16 Si 0.940 3.060 17 H -0.280 1.280 18 H -0.281 1.281 19 H -0.272 1.272 20 N -0.342 5.342 21 N -0.364 5.364 22 C 0.252 3.748 23 N -0.565 5.565 24 C 0.449 3.551 25 N -0.510 5.510 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.193 0.807 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.267 0.733 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 7.403 0.339 7.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.324 6.324 3 C 0.041 3.959 4 C 0.085 3.915 5 C -0.279 4.279 6 C 0.177 3.823 7 N -0.197 5.197 8 C -0.102 4.102 9 C 0.109 3.891 10 H 0.053 0.947 11 C -0.178 4.178 12 C -0.588 4.588 13 H 0.068 0.932 14 C -0.154 4.154 15 N -0.534 5.534 16 Si 0.766 3.234 17 H -0.206 1.206 18 H -0.207 1.207 19 H -0.197 1.197 20 N -0.124 5.124 21 N -0.195 5.195 22 C -0.049 4.049 23 N -0.301 5.301 24 C 0.088 3.912 25 N -0.233 5.233 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.209 0.791 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -0.863 7.768 0.803 7.857 hybrid contribution -0.706 -0.962 -1.288 1.756 sum -1.569 6.806 -0.484 7.002 Atomic orbital electron populations 1.22960 0.78361 1.03722 1.01691 1.87985 1.22184 1.26408 1.95783 1.21089 0.84096 0.86098 1.04594 1.21752 0.97583 0.86799 0.85359 1.22500 0.90741 1.02468 1.12205 1.19643 0.88850 0.83644 0.90199 1.58507 1.21673 1.00051 1.39472 1.22369 0.94884 1.04115 0.88863 1.19559 0.87385 0.85328 0.96827 0.94747 1.21666 0.99406 0.98485 0.98253 1.21382 1.21567 1.17385 0.98427 0.93190 1.25276 0.96563 0.94632 0.98960 1.69937 1.31384 1.19042 1.33072 0.85888 0.78622 0.77920 0.80953 1.20561 1.20669 1.19692 1.48841 1.07720 1.07347 1.48523 1.78338 0.88345 1.18354 1.34499 1.27120 0.98128 0.87997 0.91658 1.70910 0.97776 1.28284 1.33109 1.22950 0.91294 0.80867 0.96097 1.67472 0.99465 1.31049 1.25268 0.89567 0.91643 0.92373 0.87331 0.88003 0.79056 0.90472 0.89025 0.94381 0.94990 0.90737 0.94230 0.92337 0.71016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.40 -12.50 9.19 -148.98 -1.37 -13.87 16 3 C 0.12 3.20 6.48 71.24 0.46 3.66 16 4 C 0.24 8.71 6.81 42.83 0.29 9.00 16 5 C -0.25 -10.24 7.49 22.50 0.17 -10.07 16 6 C 0.40 16.76 6.22 131.99 0.82 17.58 16 7 N -0.48 -20.42 4.77 -705.30 -3.36 -23.79 16 8 C 0.04 1.63 8.72 127.69 1.11 2.75 16 9 C 0.21 9.69 1.87 44.17 0.08 9.77 16 10 H 0.03 1.72 6.69 -2.39 -0.02 1.71 16 11 C -0.12 -5.21 8.66 71.98 0.62 -4.58 16 12 C -0.55 -26.25 5.43 25.60 0.14 -26.11 16 13 H 0.05 2.47 6.14 -2.91 -0.02 2.45 16 14 C 0.05 2.36 5.30 84.65 0.45 2.81 16 15 N -0.90 -45.13 11.40 21.45 0.24 -44.89 16 16 Si 0.94 39.58 29.54 68.60 2.03 41.61 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 N -0.34 -13.97 3.76 -194.99 -0.73 -14.70 16 21 N -0.36 -13.38 11.02 -61.35 -0.68 -14.06 16 22 C 0.25 7.74 12.98 180.82 2.35 10.09 16 23 N -0.56 -21.00 11.26 -203.48 -2.29 -23.29 16 24 C 0.45 18.16 9.00 261.61 2.35 20.51 16 25 N -0.51 -19.50 10.38 -186.13 -1.93 -21.43 16 26 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.19 8.64 3.94 -2.91 -0.01 8.63 16 32 H 0.08 2.87 6.30 -2.38 -0.02 2.85 16 33 H 0.09 3.31 6.48 -2.39 -0.02 3.29 16 34 H 0.04 1.55 6.23 -2.39 -0.01 1.53 16 35 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 3.52 6.28 -2.39 -0.02 3.51 16 37 H 0.04 1.64 6.81 -2.39 -0.02 1.63 16 38 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 39 H 0.27 4.92 8.06 -2.92 -0.02 4.90 16 Total: -1.00 -60.42 316.71 3.09 -57.33 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.09 Total: 19.83 kcal Atomic # 6 Polarization: 27.17 SS G_CDS: 10.10 Total: 37.27 kcal Atomic # 7 Polarization: -133.40 SS G_CDS: -8.75 Total: -142.16 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -1.37 Total: -13.87 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -60.42 3.09 -57.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301542246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.558 kcal (2) G-P(sol) polarization free energy of solvation -60.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds