Wall clock time and date at job start Tue Mar 31 2020 06:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99694 * 2 1 4 4 C 1.50696 * 109.46770 * 179.97438 * 3 2 1 5 5 C 1.39256 * 119.78931 * 0.02562 * 4 3 2 6 6 C 1.38153 * 119.01775 * 179.97438 * 5 4 3 7 7 N 1.37722 * 120.64003 * 179.97438 * 6 5 4 8 8 C 1.46899 * 110.99931 * 299.20905 * 7 6 5 9 9 C 1.46895 * 111.00218 * 63.16746 * 7 6 5 10 10 H 1.08999 * 109.46857 * 296.22815 * 9 7 6 11 11 C 1.52997 * 109.47389 * 56.22522 * 9 7 6 12 12 C 1.50696 * 109.47006 * 176.22795 * 9 7 6 13 13 H 1.08002 * 120.00364 * 0.02562 * 12 9 7 14 14 C 1.37875 * 120.00109 * 180.27106 * 12 9 7 15 15 N 1.31517 * 120.00132 * 359.73091 * 14 12 9 16 16 Si 1.86803 * 120.00441 * 179.72481 * 14 12 9 17 17 H 1.48502 * 109.46803 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47103 * 120.00059 * 16 14 12 19 19 H 1.48503 * 109.47251 * 240.00329 * 16 14 12 20 20 N 1.36511 * 118.71253 * 0.24634 * 6 5 4 21 21 N 1.40059 * 133.37455 * 179.74670 * 20 6 5 22 22 C 1.31062 * 107.04069 * 180.02562 * 21 20 6 23 23 N 1.32737 * 109.62346 * 359.50433 * 22 21 20 24 24 C 1.32856 * 109.73948 * 0.59361 * 23 22 21 25 25 N 1.31657 * 119.78337 * 179.97438 * 4 3 2 26 26 H 1.08991 * 109.47677 * 300.00003 * 1 2 3 27 27 H 1.09006 * 109.47330 * 60.00251 * 1 2 3 28 28 H 1.09001 * 109.46853 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46988 * 59.99876 * 3 2 1 30 30 H 1.08997 * 109.46906 * 299.99844 * 3 2 1 31 31 H 1.08000 * 120.48639 * 359.97438 * 5 4 3 32 32 H 1.08997 * 109.46823 * 183.96052 * 8 7 6 33 33 H 1.09003 * 109.47355 * 303.95346 * 8 7 6 34 34 H 1.09000 * 109.47108 * 63.95569 * 8 7 6 35 35 H 1.08999 * 109.47264 * 184.99693 * 11 9 7 36 36 H 1.08993 * 109.47479 * 305.00230 * 11 9 7 37 37 H 1.09006 * 109.47002 * 64.99908 * 11 9 7 38 38 H 0.97002 * 120.00466 * 179.97438 * 15 14 12 39 39 H 1.07996 * 125.19036 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.1067 -0.0729 0.0006 6 6 5.4852 -0.1634 0.0006 7 7 6.1079 -1.3918 0.0011 8 6 5.7490 -2.1635 1.1984 9 6 5.7939 -2.1417 -1.2224 10 1 4.7253 -2.3541 -1.2541 11 6 6.1849 -1.3096 -2.4452 12 6 6.5639 -3.4371 -1.2291 13 1 7.2206 -3.6793 -0.4066 14 6 6.4340 -4.3108 -2.2877 15 7 5.6340 -4.0162 -3.2892 16 14 7.3943 -5.9130 -2.2998 17 1 8.2172 -6.0061 -1.0671 18 1 6.4485 -7.0567 -2.3517 19 1 8.2813 -5.9496 -3.4903 20 7 6.2181 0.9883 0.0059 21 7 7.5934 1.2532 0.0120 22 6 7.7335 2.5563 0.0157 23 7 6.5381 3.1332 0.0015 24 6 5.5905 2.2021 0.0012 25 7 4.2546 2.2740 0.0002 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.4988 -0.9655 0.0005 32 1 6.3082 -3.0990 1.2087 33 1 5.9921 -1.5852 2.0898 34 1 4.6806 -2.3788 1.1851 35 1 5.8714 -1.8268 -3.3520 36 1 5.6960 -0.3368 -2.3942 37 1 7.2662 -1.1724 -2.4607 38 1 5.5429 -4.6307 -4.0341 39 1 8.6775 3.0808 0.0203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301542247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:35 Heat of formation + Delta-G solvation = 116.438033 kcal Electronic energy + Delta-G solvation = -23864.626052 eV Core-core repulsion = 20425.271631 eV Total energy + Delta-G solvation = -3439.354421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.55884 -39.38467 -38.19170 -37.04317 -33.82673 -32.65328 -31.48045 -29.99661 -29.43664 -28.17114 -26.13856 -25.94933 -24.79323 -23.66121 -22.34772 -21.69602 -19.78782 -18.33088 -17.71707 -16.67501 -16.52644 -16.12385 -16.05018 -15.87305 -15.21068 -14.74063 -14.46270 -14.00636 -13.74575 -13.38191 -13.33579 -12.71790 -12.55517 -12.28291 -12.10857 -11.92718 -11.57722 -11.45523 -11.24197 -11.00023 -10.87478 -10.49217 -10.44146 -10.19000 -10.03700 -9.88724 -9.81005 -9.31707 -9.25635 -8.64997 -8.24459 -7.95648 -6.20532 -4.26534 0.61652 1.03146 2.16073 2.87990 2.93322 3.20806 3.29400 3.33278 3.60185 3.95275 4.09035 4.31207 4.34552 4.73555 5.00439 5.01476 5.09184 5.12950 5.16336 5.25087 5.42768 5.52571 5.64066 5.66669 5.84461 5.97305 6.28757 6.42097 6.49257 6.52233 6.61781 6.73015 6.79147 6.86230 7.07962 7.36510 7.58424 7.67416 7.71911 7.96856 8.14857 8.28194 8.76778 9.39017 10.86761 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.006005 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.375790 B = 4661.962267 C = 6129.811937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.115 3.885 4 C 0.237 3.763 5 C -0.245 4.245 6 C 0.423 3.577 7 N -0.513 5.513 8 C 0.047 3.953 9 C 0.225 3.775 10 H 0.020 0.980 11 C -0.133 4.133 12 C -0.510 4.510 13 H 0.069 0.931 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.903 3.097 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.311 5.311 21 N -0.312 5.312 22 C 0.233 3.767 23 N -0.542 5.542 24 C 0.452 3.548 25 N -0.481 5.481 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.178 0.822 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.093 0.907 36 H -0.004 1.004 37 H 0.041 0.959 38 H 0.264 0.736 39 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 7.450 6.904 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.038 3.962 4 C 0.075 3.925 5 C -0.273 4.273 6 C 0.209 3.791 7 N -0.236 5.236 8 C -0.099 4.099 9 C 0.123 3.877 10 H 0.038 0.962 11 C -0.192 4.192 12 C -0.549 4.549 13 H 0.087 0.913 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.092 5.092 21 N -0.142 5.142 22 C -0.069 4.069 23 N -0.277 5.277 24 C 0.091 3.909 25 N -0.200 5.200 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.195 0.805 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.015 0.985 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.213 8.108 6.722 12.765 hybrid contribution -0.136 -1.468 -0.268 1.499 sum -7.349 6.639 6.454 11.822 Atomic orbital electron populations 1.22795 0.79771 1.03431 1.00234 1.87882 1.20489 1.26172 1.95598 1.20960 0.86491 0.85780 1.03008 1.21188 0.95803 0.87804 0.87675 1.22340 0.92017 1.01216 1.11747 1.19301 0.86874 0.86475 0.86475 1.58798 1.57775 0.99806 1.07263 1.22333 0.99818 0.98860 0.88874 1.19594 0.95961 0.91078 0.81063 0.96211 1.21884 0.99856 0.95316 1.02103 1.21020 1.26617 1.00915 1.06302 0.91274 1.24916 0.95280 0.98594 0.95108 1.69893 1.37074 1.36753 1.09015 0.86348 0.79690 0.82606 0.78259 1.19565 1.20909 1.20885 1.49288 1.07282 1.07619 1.45020 1.78674 0.88832 1.16275 1.30370 1.26271 0.97172 0.88885 0.94569 1.70847 0.97151 1.28332 1.31339 1.22551 0.90478 0.81015 0.96866 1.67358 1.00112 1.30688 1.21883 0.93745 0.93605 0.88974 0.89705 0.89593 0.80514 0.88483 0.93151 0.94588 0.88809 0.98473 0.93968 0.92642 0.75730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.51 9.19 -35.23 -0.32 -4.83 16 3 C 0.11 1.30 6.48 36.00 0.23 1.53 16 4 C 0.24 3.72 6.81 -82.29 -0.56 3.16 16 5 C -0.24 -4.26 7.99 -39.23 -0.31 -4.57 16 6 C 0.42 8.46 4.13 -152.97 -0.63 7.83 16 7 N -0.51 -10.94 4.67 -174.29 -0.81 -11.76 16 8 C 0.05 0.85 8.97 60.06 0.54 1.39 16 9 C 0.23 5.42 1.80 -68.87 -0.12 5.29 16 10 H 0.02 0.51 7.43 -51.93 -0.39 0.12 16 11 C -0.13 -3.31 8.80 37.16 0.33 -2.99 16 12 C -0.51 -13.16 7.94 -34.44 -0.27 -13.43 16 13 H 0.07 1.78 6.66 -52.49 -0.35 1.43 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.05 11.37 55.43 0.63 -23.42 16 16 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 N -0.31 -6.38 3.93 -12.98 -0.05 -6.43 16 21 N -0.31 -6.27 12.78 29.26 0.37 -5.90 16 22 C 0.23 3.93 12.98 -91.96 -1.19 2.73 16 23 N -0.54 -10.30 11.26 -15.66 -0.18 -10.48 16 24 C 0.45 8.94 9.00 -323.17 -2.91 6.04 16 25 N -0.48 -8.60 10.38 -10.18 -0.11 -8.70 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.18 2.96 6.11 -52.49 -0.32 2.64 16 32 H 0.10 1.80 6.45 -51.93 -0.34 1.46 16 33 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 34 H 0.04 0.59 7.31 -51.93 -0.38 0.21 16 35 H 0.09 2.48 6.21 -51.93 -0.32 2.16 16 36 H 0.00 -0.09 6.95 -51.93 -0.36 -0.45 16 37 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.23 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 326.10 15.07 4.91 4.91 Total: -1.00 -31.50 326.10 -9.43 -40.93 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.97 Total: 0.38 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -3.89 Total: 9.93 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.14 Total: -66.69 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.32 Total: -4.83 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.50 -9.43 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301542247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.371 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds