Wall clock time and date at job start Tue Mar 31 2020 06:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99694 * 2 1 4 4 C 1.50696 * 109.46770 * 179.97438 * 3 2 1 5 5 C 1.39256 * 119.78931 * 0.02562 * 4 3 2 6 6 C 1.38153 * 119.01775 * 179.97438 * 5 4 3 7 7 N 1.37722 * 120.64003 * 179.97438 * 6 5 4 8 8 C 1.46899 * 110.99931 * 299.20905 * 7 6 5 9 9 C 1.46895 * 111.00218 * 63.16746 * 7 6 5 10 10 H 1.08999 * 109.46857 * 296.22815 * 9 7 6 11 11 C 1.52997 * 109.47389 * 56.22522 * 9 7 6 12 12 C 1.50696 * 109.47006 * 176.22795 * 9 7 6 13 13 H 1.08002 * 120.00364 * 0.02562 * 12 9 7 14 14 C 1.37875 * 120.00109 * 180.27106 * 12 9 7 15 15 N 1.31517 * 120.00132 * 359.73091 * 14 12 9 16 16 Si 1.86803 * 120.00441 * 179.72481 * 14 12 9 17 17 H 1.48502 * 109.46803 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47103 * 120.00059 * 16 14 12 19 19 H 1.48503 * 109.47251 * 240.00329 * 16 14 12 20 20 N 1.36511 * 118.71253 * 0.24634 * 6 5 4 21 21 N 1.40059 * 133.37455 * 179.74670 * 20 6 5 22 22 C 1.31062 * 107.04069 * 180.02562 * 21 20 6 23 23 N 1.32737 * 109.62346 * 359.50433 * 22 21 20 24 24 C 1.32856 * 109.73948 * 0.59361 * 23 22 21 25 25 N 1.31657 * 119.78337 * 179.97438 * 4 3 2 26 26 H 1.08991 * 109.47677 * 300.00003 * 1 2 3 27 27 H 1.09006 * 109.47330 * 60.00251 * 1 2 3 28 28 H 1.09001 * 109.46853 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46988 * 59.99876 * 3 2 1 30 30 H 1.08997 * 109.46906 * 299.99844 * 3 2 1 31 31 H 1.08000 * 120.48639 * 359.97438 * 5 4 3 32 32 H 1.08997 * 109.46823 * 183.96052 * 8 7 6 33 33 H 1.09003 * 109.47355 * 303.95346 * 8 7 6 34 34 H 1.09000 * 109.47108 * 63.95569 * 8 7 6 35 35 H 1.08999 * 109.47264 * 184.99693 * 11 9 7 36 36 H 1.08993 * 109.47479 * 305.00230 * 11 9 7 37 37 H 1.09006 * 109.47002 * 64.99908 * 11 9 7 38 38 H 0.97002 * 120.00466 * 179.97438 * 15 14 12 39 39 H 1.07996 * 125.19036 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.1067 -0.0729 0.0006 6 6 5.4852 -0.1634 0.0006 7 7 6.1079 -1.3918 0.0011 8 6 5.7490 -2.1635 1.1984 9 6 5.7939 -2.1417 -1.2224 10 1 4.7253 -2.3541 -1.2541 11 6 6.1849 -1.3096 -2.4452 12 6 6.5639 -3.4371 -1.2291 13 1 7.2206 -3.6793 -0.4066 14 6 6.4340 -4.3108 -2.2877 15 7 5.6340 -4.0162 -3.2892 16 14 7.3943 -5.9130 -2.2998 17 1 8.2172 -6.0061 -1.0671 18 1 6.4485 -7.0567 -2.3517 19 1 8.2813 -5.9496 -3.4903 20 7 6.2181 0.9883 0.0059 21 7 7.5934 1.2532 0.0120 22 6 7.7335 2.5563 0.0157 23 7 6.5381 3.1332 0.0015 24 6 5.5905 2.2021 0.0012 25 7 4.2546 2.2740 0.0002 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.4988 -0.9655 0.0005 32 1 6.3082 -3.0990 1.2087 33 1 5.9921 -1.5852 2.0898 34 1 4.6806 -2.3788 1.1851 35 1 5.8714 -1.8268 -3.3520 36 1 5.6960 -0.3368 -2.3942 37 1 7.2662 -1.1724 -2.4607 38 1 5.5429 -4.6307 -4.0341 39 1 8.6775 3.0808 0.0203 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301542247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:34 Heat of formation + Delta-G solvation = 98.046797 kcal Electronic energy + Delta-G solvation = -23865.423556 eV Core-core repulsion = 20425.271631 eV Total energy + Delta-G solvation = -3440.151925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.97080 -40.78483 -39.37595 -38.25259 -35.53733 -34.32045 -32.76407 -31.66930 -31.09222 -29.21343 -27.78131 -26.80638 -26.54897 -25.13174 -23.70204 -23.22865 -21.42861 -19.71781 -19.08811 -18.38969 -17.96416 -17.46101 -17.05284 -16.89661 -16.73983 -16.21390 -15.79061 -15.62534 -15.14085 -14.95771 -14.36659 -14.19862 -13.98943 -13.80813 -13.45750 -13.14394 -13.03970 -12.95872 -12.78388 -12.65175 -12.36028 -12.30381 -12.27212 -12.03848 -11.37565 -11.21444 -11.16818 -10.93809 -10.62970 -10.50645 -9.71263 -9.62246 -8.19937 -6.32009 -0.77466 -0.36279 0.74404 1.42076 1.45453 1.52260 1.56386 1.81905 2.21622 2.36211 2.63819 2.99473 3.02393 3.11863 3.52329 3.76923 3.89586 4.20514 4.23914 4.33063 4.34511 4.44305 4.51402 4.62906 4.65294 4.68365 4.69296 4.76245 4.94392 4.98610 4.99430 5.15184 5.25831 5.31172 5.49216 5.62204 5.89198 6.01982 6.10419 6.30394 6.35273 6.75909 6.84440 7.36876 8.87210 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.006005 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.375790 B = 4661.962267 C = 6129.811937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.119 3.881 4 C 0.245 3.755 5 C -0.235 4.235 6 C 0.396 3.604 7 N -0.525 5.525 8 C 0.049 3.951 9 C 0.236 3.764 10 H 0.005 0.995 11 C -0.114 4.114 12 C -0.522 4.522 13 H 0.066 0.934 14 C 0.020 3.980 15 N -0.916 5.916 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.285 1.285 20 N -0.322 5.322 21 N -0.352 5.352 22 C 0.245 3.755 23 N -0.557 5.557 24 C 0.436 3.564 25 N -0.485 5.485 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.182 0.818 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.074 0.926 36 H -0.001 1.001 37 H 0.022 0.978 38 H 0.265 0.735 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.173 7.833 7.691 14.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.042 3.958 4 C 0.083 3.917 5 C -0.263 4.263 6 C 0.182 3.818 7 N -0.249 5.249 8 C -0.096 4.096 9 C 0.133 3.867 10 H 0.022 0.978 11 C -0.172 4.172 12 C -0.560 4.560 13 H 0.084 0.916 14 C -0.180 4.180 15 N -0.555 5.555 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.211 1.211 20 N -0.103 5.103 21 N -0.182 5.182 22 C -0.055 4.055 23 N -0.292 5.292 24 C 0.075 3.925 25 N -0.205 5.205 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.199 0.801 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.018 0.982 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -8.155 8.490 7.530 13.974 hybrid contribution 0.066 -1.510 -0.490 1.589 sum -8.089 6.979 7.040 12.795 Atomic orbital electron populations 1.23014 0.77698 1.04297 1.01798 1.87841 1.22706 1.26434 1.95895 1.21143 0.83235 0.86258 1.05190 1.21892 0.97945 0.86517 0.85329 1.22490 0.91073 1.02330 1.10394 1.19449 0.87699 0.85854 0.88789 1.58572 1.58813 1.00460 1.07055 1.22362 1.00485 0.98427 0.88362 1.19265 0.94647 0.90746 0.82084 0.97768 1.21648 0.98308 0.95321 1.01967 1.21250 1.26663 1.01801 1.06296 0.91591 1.25654 0.96061 1.01523 0.94778 1.69993 1.38160 1.37798 1.09499 0.85402 0.78430 0.79113 0.78062 1.19078 1.20136 1.21118 1.49306 1.07509 1.07792 1.45724 1.78598 0.89190 1.18112 1.32306 1.27185 0.98192 0.88039 0.92128 1.70882 0.97759 1.28514 1.32043 1.22996 0.91350 0.81105 0.97044 1.67500 0.99383 1.31246 1.22370 0.91745 0.92447 0.88573 0.86757 0.87640 0.80062 0.89324 0.91472 0.93299 0.90696 0.98216 0.95848 0.92537 0.71143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.72 9.19 -148.98 -1.37 -10.09 16 3 C 0.12 2.36 6.48 71.23 0.46 2.82 16 4 C 0.24 7.31 6.81 42.83 0.29 7.61 16 5 C -0.24 -8.03 7.99 22.49 0.18 -7.85 16 6 C 0.40 15.83 4.13 131.98 0.54 16.38 16 7 N -0.53 -22.61 4.67 -705.33 -3.29 -25.90 16 8 C 0.05 1.76 8.97 127.69 1.15 2.91 16 9 C 0.24 11.54 1.80 44.17 0.08 11.62 16 10 H 0.00 0.25 7.43 -2.39 -0.02 0.23 16 11 C -0.11 -5.82 8.80 71.98 0.63 -5.18 16 12 C -0.52 -27.18 7.94 25.60 0.20 -26.98 16 13 H 0.07 3.41 6.66 -2.91 -0.02 3.39 16 14 C 0.02 1.04 5.30 84.65 0.45 1.48 16 15 N -0.92 -50.02 11.37 21.45 0.24 -49.78 16 16 Si 0.96 41.76 29.54 68.60 2.03 43.78 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 20 N -0.32 -13.21 3.93 -194.99 -0.77 -13.97 16 21 N -0.35 -14.12 12.78 -61.35 -0.78 -14.90 16 22 C 0.25 8.01 12.98 180.82 2.35 10.35 16 23 N -0.56 -20.67 11.26 -203.47 -2.29 -22.96 16 24 C 0.44 17.01 9.00 261.61 2.35 19.36 16 25 N -0.49 -16.74 10.38 -186.13 -1.93 -18.67 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.18 5.97 6.11 -2.91 -0.02 5.95 16 32 H 0.09 3.29 6.45 -2.39 -0.02 3.27 16 33 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 34 H 0.05 1.59 7.31 -2.39 -0.02 1.58 16 35 H 0.07 4.07 6.21 -2.39 -0.01 4.06 16 36 H 0.00 -0.06 6.95 -2.39 -0.02 -0.07 16 37 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 39 H 0.27 5.53 8.06 -2.91 -0.02 5.51 16 Total: -1.00 -68.36 326.10 2.85 -65.51 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.07 Total: 12.85 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 9.94 Total: 34.12 kcal Atomic # 7 Polarization: -137.36 SS G_CDS: -8.82 Total: -146.18 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -1.37 Total: -10.09 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -68.36 2.85 -65.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301542247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.560 kcal (2) G-P(sol) polarization free energy of solvation -68.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds