Wall clock time and date at job start Tue Mar 31 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47019 * 2 1 4 4 H 1.09000 * 109.47386 * 305.71626 * 3 2 1 5 5 C 1.50707 * 109.46891 * 185.71508 * 3 2 1 6 6 H 1.07992 * 119.99919 * 274.99718 * 5 3 2 7 7 C 1.37881 * 119.99588 * 95.00533 * 5 3 2 8 8 N 1.31515 * 119.99392 * 184.82599 * 7 5 3 9 9 Si 1.86796 * 120.00197 * 4.82445 * 7 5 3 10 10 H 1.48508 * 109.47096 * 84.86440 * 9 7 5 11 11 H 1.48501 * 109.47202 * 204.86004 * 9 7 5 12 12 H 1.48496 * 109.47439 * 324.86263 * 9 7 5 13 13 N 1.46502 * 109.47491 * 65.71625 * 3 2 1 14 14 C 1.37711 * 120.00031 * 275.00093 * 13 3 2 15 15 C 1.38153 * 120.64252 * 359.71749 * 14 13 3 16 16 C 1.39263 * 119.01835 * 179.78167 * 15 14 13 17 17 C 1.50696 * 119.78572 * 180.24935 * 16 15 14 18 18 O 1.42904 * 109.47176 * 0.25065 * 17 16 15 19 19 C 1.42903 * 113.99763 * 180.02562 * 18 17 16 20 20 N 1.31650 * 120.42766 * 0.50049 * 16 15 14 21 21 C 1.33793 * 121.22737 * 359.74396 * 20 16 15 22 22 N 1.32858 * 132.41727 * 179.97438 * 21 20 16 23 23 C 1.32723 * 109.74521 * 180.02562 * 22 21 20 24 24 N 1.31075 * 109.62281 * 0.02562 * 23 22 21 25 25 N 1.36508 * 120.64635 * 179.97438 * 14 13 3 26 26 H 1.08997 * 109.47044 * 59.99940 * 1 2 3 27 27 H 1.09001 * 109.46734 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46984 * 299.99940 * 1 2 3 29 29 H 1.08997 * 109.47044 * 120.00059 * 2 1 3 30 30 H 1.08997 * 109.47099 * 239.99566 * 2 1 3 31 31 H 0.96999 * 119.99631 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99729 * 94.99818 * 13 3 2 33 33 H 1.08000 * 120.49418 * 0.02562 * 15 14 13 34 34 H 1.08998 * 109.47150 * 120.25248 * 17 16 15 35 35 H 1.09005 * 109.46739 * 240.25187 * 17 16 15 36 36 H 1.09001 * 109.46933 * 59.99847 * 19 18 17 37 37 H 1.09004 * 109.46772 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47246 * 300.00065 * 19 18 17 39 39 H 1.07995 * 125.19103 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5955 1.9850 -0.8344 5 6 3.5404 1.4448 -0.1415 6 1 4.1653 1.3332 0.7322 7 6 4.1152 1.5894 -1.3864 8 7 5.4199 1.4966 -1.5230 9 14 3.0407 1.9173 -2.8789 10 1 2.7742 3.3743 -2.9865 11 1 3.7386 1.4500 -4.1035 12 1 1.7552 1.1884 -2.7331 13 7 1.6673 2.0923 1.2590 14 6 0.4250 2.6710 1.3937 15 6 -0.4780 2.6516 0.3483 16 6 -1.7266 3.2430 0.5230 17 6 -2.7269 3.2269 -0.6040 18 8 -2.1653 2.5491 -1.7297 19 6 -3.0372 2.4781 -2.8597 20 7 -2.0370 3.8205 1.6647 21 6 -1.1711 3.8515 2.6842 22 7 -1.2462 4.3620 3.9085 23 6 -0.1118 4.1355 4.5591 24 7 0.7176 3.4812 3.7831 25 7 0.0637 3.2795 2.5610 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 5.8243 1.5980 -2.3989 32 1 2.2956 2.1148 1.9977 33 1 -0.2209 2.1812 -0.5893 34 1 -3.6297 2.7085 -0.2810 35 1 -2.9760 4.2507 -0.8834 36 1 -3.2923 3.4864 -3.1857 37 1 -2.5374 1.9496 -3.6716 38 1 -3.9467 1.9444 -2.5839 39 1 0.0965 4.4440 5.5729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302129936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:05 Heat of formation + Delta-G solvation = 96.616955 kcal Electronic energy + Delta-G solvation = -23950.781214 eV Core-core repulsion = 20510.567287 eV Total energy + Delta-G solvation = -3440.213927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.46485 -39.21212 -37.97085 -36.83435 -34.19641 -32.55375 -31.37714 -31.29411 -29.89094 -28.22413 -27.31996 -25.94895 -23.94103 -23.09412 -22.29251 -21.36893 -20.19759 -18.68541 -17.64970 -17.30397 -16.47143 -16.31256 -16.02787 -15.87443 -15.47439 -14.90176 -14.44167 -14.32308 -13.98206 -13.33966 -13.23278 -13.01785 -12.47067 -12.37190 -12.26519 -12.12477 -11.96918 -11.78956 -11.49938 -11.14425 -10.94428 -10.86011 -10.33058 -10.08449 -9.95793 -9.84272 -9.64275 -9.47137 -9.39691 -9.06772 -8.87896 -7.32354 -6.46814 -4.54244 1.00990 1.24756 2.08841 2.94680 3.05966 3.10132 3.15181 3.17547 3.52114 3.78991 4.08371 4.12942 4.43157 4.81116 4.89796 5.07027 5.13325 5.16513 5.22823 5.33631 5.53905 5.56759 5.70631 5.75520 5.82096 5.91820 5.96935 6.10686 6.29930 6.47476 6.53834 6.56115 6.63107 6.68736 6.96131 6.96908 7.09428 7.35700 7.74435 8.00443 8.11425 8.32172 8.54411 9.10029 10.64163 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.007117 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.686049 B = 3933.238144 C = 5489.869734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.130 4.130 3 C 0.236 3.764 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.082 0.918 7 C 0.086 3.914 8 N -0.876 5.876 9 Si 0.869 3.131 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.255 1.255 13 N -0.662 5.662 14 C 0.493 3.507 15 C -0.318 4.318 16 C 0.254 3.746 17 C 0.117 3.883 18 O -0.382 6.382 19 C 0.033 3.967 20 N -0.529 5.529 21 C 0.490 3.510 22 N -0.553 5.553 23 C 0.248 3.752 24 N -0.354 5.354 25 N -0.365 5.365 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.272 0.728 32 H 0.411 0.589 33 H 0.180 0.820 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.098 0.755 -0.553 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C 0.134 3.866 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.100 0.900 7 C -0.121 4.121 8 N -0.511 5.511 9 Si 0.694 3.306 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.179 1.179 13 N -0.283 5.283 14 C 0.261 3.739 15 C -0.352 4.352 16 C 0.100 3.900 17 C 0.039 3.961 18 O -0.300 6.300 19 C -0.064 4.064 20 N -0.255 5.255 21 C 0.129 3.871 22 N -0.289 5.289 23 C -0.055 4.055 24 N -0.185 5.185 25 N -0.152 5.152 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.248 0.752 33 H 0.197 0.803 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -13.930 0.975 -0.153 13.965 hybrid contribution 0.432 -0.085 -0.695 0.823 sum -13.498 0.890 -0.847 13.554 Atomic orbital electron populations 1.22301 0.97449 1.00593 1.01555 1.22181 0.93635 0.98693 1.02416 1.19604 0.96915 0.89384 0.80651 0.92694 1.20868 0.87809 1.52916 0.95942 0.89955 1.24948 0.95014 0.93287 0.98826 1.69859 1.09814 1.46496 1.24890 0.86961 0.81346 0.79923 0.82334 1.19426 1.20664 1.17917 1.46176 1.09910 1.52823 1.19405 1.18471 0.88313 0.85251 0.81865 1.21350 0.94894 1.17940 1.01010 1.20785 0.92054 0.86511 0.90610 1.20921 0.93136 0.98128 0.83889 1.87896 1.41619 1.77804 1.22714 1.22786 0.94332 1.00902 0.88332 1.67395 1.30872 1.28033 0.99230 1.22559 0.80486 0.90785 0.93264 1.70884 1.24951 1.31146 1.01951 1.26059 0.86461 0.92746 1.00201 1.78297 1.20557 1.29231 0.90413 1.48804 1.15261 1.40559 1.10594 0.91938 0.93876 0.93375 0.92318 0.90883 0.91782 0.75167 0.80295 0.89963 0.89965 0.93757 0.89181 0.93741 0.75928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.24 37.16 0.31 -2.30 16 2 C -0.13 -2.42 5.59 -26.73 -0.15 -2.57 16 3 C 0.24 4.88 1.85 -69.08 -0.13 4.75 16 4 H 0.06 1.16 3.63 -51.93 -0.19 0.97 16 5 C -0.54 -13.33 9.05 -34.44 -0.31 -13.64 16 6 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 7 C 0.09 2.21 5.47 -17.82 -0.10 2.11 16 8 N -0.88 -24.25 13.96 55.43 0.77 -23.47 16 9 Si 0.87 19.00 26.99 -169.99 -4.59 14.41 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.26 -5.15 6.82 56.52 0.39 -4.76 16 13 N -0.66 -12.88 5.14 -54.65 -0.28 -13.16 16 14 C 0.49 9.27 6.62 -152.99 -1.01 8.25 16 15 C -0.32 -5.49 6.06 -39.23 -0.24 -5.73 16 16 C 0.25 4.04 6.81 -82.29 -0.56 3.48 16 17 C 0.12 1.38 6.48 36.00 0.23 1.61 16 18 O -0.38 -4.70 9.19 -35.23 -0.32 -5.02 16 19 C 0.03 0.28 11.01 101.05 1.11 1.39 16 20 N -0.53 -9.48 10.38 -10.18 -0.11 -9.59 16 21 C 0.49 9.47 9.00 -323.16 -2.91 6.56 16 22 N -0.55 -10.25 11.26 -15.66 -0.18 -10.42 16 23 C 0.25 3.93 12.98 -91.96 -1.19 2.74 16 24 N -0.35 -6.46 12.76 29.26 0.37 -6.08 16 25 N -0.37 -7.02 3.93 -12.98 -0.05 -7.07 16 26 H 0.06 0.98 6.43 -51.93 -0.33 0.65 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.80 5.37 -51.93 -0.28 0.52 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.41 8.07 8.70 -40.82 -0.36 7.71 16 33 H 0.18 3.10 3.06 -52.49 -0.16 2.94 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.22 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -29.85 320.55 -9.19 -39.04 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.70 Total: 9.88 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -4.95 Total: 6.65 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: 0.53 Total: -69.80 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.32 Total: -5.02 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.59 Total: 14.41 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.85 -9.19 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302129936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.661 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds