Wall clock time and date at job start Tue Mar 31 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47019 * 2 1 4 4 H 1.09000 * 109.47386 * 305.71626 * 3 2 1 5 5 C 1.50707 * 109.46891 * 185.71508 * 3 2 1 6 6 H 1.07992 * 119.99919 * 274.99718 * 5 3 2 7 7 C 1.37881 * 119.99588 * 95.00533 * 5 3 2 8 8 N 1.31515 * 119.99392 * 184.82599 * 7 5 3 9 9 Si 1.86796 * 120.00197 * 4.82445 * 7 5 3 10 10 H 1.48508 * 109.47096 * 84.86440 * 9 7 5 11 11 H 1.48501 * 109.47202 * 204.86004 * 9 7 5 12 12 H 1.48496 * 109.47439 * 324.86263 * 9 7 5 13 13 N 1.46502 * 109.47491 * 65.71625 * 3 2 1 14 14 C 1.37711 * 120.00031 * 275.00093 * 13 3 2 15 15 C 1.38153 * 120.64252 * 359.71749 * 14 13 3 16 16 C 1.39263 * 119.01835 * 179.78167 * 15 14 13 17 17 C 1.50696 * 119.78572 * 180.24935 * 16 15 14 18 18 O 1.42904 * 109.47176 * 0.25065 * 17 16 15 19 19 C 1.42903 * 113.99763 * 180.02562 * 18 17 16 20 20 N 1.31650 * 120.42766 * 0.50049 * 16 15 14 21 21 C 1.33793 * 121.22737 * 359.74396 * 20 16 15 22 22 N 1.32858 * 132.41727 * 179.97438 * 21 20 16 23 23 C 1.32723 * 109.74521 * 180.02562 * 22 21 20 24 24 N 1.31075 * 109.62281 * 0.02562 * 23 22 21 25 25 N 1.36508 * 120.64635 * 179.97438 * 14 13 3 26 26 H 1.08997 * 109.47044 * 59.99940 * 1 2 3 27 27 H 1.09001 * 109.46734 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46984 * 299.99940 * 1 2 3 29 29 H 1.08997 * 109.47044 * 120.00059 * 2 1 3 30 30 H 1.08997 * 109.47099 * 239.99566 * 2 1 3 31 31 H 0.96999 * 119.99631 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99729 * 94.99818 * 13 3 2 33 33 H 1.08000 * 120.49418 * 0.02562 * 15 14 13 34 34 H 1.08998 * 109.47150 * 120.25248 * 17 16 15 35 35 H 1.09005 * 109.46739 * 240.25187 * 17 16 15 36 36 H 1.09001 * 109.46933 * 59.99847 * 19 18 17 37 37 H 1.09004 * 109.46772 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.47246 * 300.00065 * 19 18 17 39 39 H 1.07995 * 125.19103 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5955 1.9850 -0.8344 5 6 3.5404 1.4448 -0.1415 6 1 4.1653 1.3332 0.7322 7 6 4.1152 1.5894 -1.3864 8 7 5.4199 1.4966 -1.5230 9 14 3.0407 1.9173 -2.8789 10 1 2.7742 3.3743 -2.9865 11 1 3.7386 1.4500 -4.1035 12 1 1.7552 1.1884 -2.7331 13 7 1.6673 2.0923 1.2590 14 6 0.4250 2.6710 1.3937 15 6 -0.4780 2.6516 0.3483 16 6 -1.7266 3.2430 0.5230 17 6 -2.7269 3.2269 -0.6040 18 8 -2.1653 2.5491 -1.7297 19 6 -3.0372 2.4781 -2.8597 20 7 -2.0370 3.8205 1.6647 21 6 -1.1711 3.8515 2.6842 22 7 -1.2462 4.3620 3.9085 23 6 -0.1118 4.1355 4.5591 24 7 0.7176 3.4812 3.7831 25 7 0.0637 3.2795 2.5610 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 5.8243 1.5980 -2.3989 32 1 2.2956 2.1148 1.9977 33 1 -0.2209 2.1812 -0.5893 34 1 -3.6297 2.7085 -0.2810 35 1 -2.9760 4.2507 -0.8834 36 1 -3.2923 3.4864 -3.1857 37 1 -2.5374 1.9496 -3.6716 38 1 -3.9467 1.9444 -2.5839 39 1 0.0965 4.4440 5.5729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302129936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:56 Heat of formation + Delta-G solvation = 79.278781 kcal Electronic energy + Delta-G solvation = -23951.533054 eV Core-core repulsion = 20510.567287 eV Total energy + Delta-G solvation = -3440.965767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 7.31 seconds Orbital eigenvalues (eV) -43.83275 -40.53120 -39.06750 -38.08267 -35.70825 -34.37063 -32.76030 -32.59308 -31.32580 -29.44459 -28.75854 -26.73168 -25.38084 -24.68950 -23.50218 -22.75377 -21.71294 -20.20769 -19.14022 -18.72112 -17.83217 -17.72409 -17.09902 -16.91704 -16.72104 -16.11630 -15.98202 -15.52114 -15.42446 -14.82218 -14.50848 -14.17795 -13.99518 -13.90220 -13.59098 -13.40910 -13.32958 -12.87723 -12.85621 -12.56849 -12.28424 -12.20175 -11.86246 -11.75898 -11.33616 -11.22231 -10.98493 -10.90750 -10.83911 -10.67570 -10.30436 -8.76821 -8.43725 -6.55707 -0.31866 -0.13262 0.70817 1.34377 1.37734 1.46424 1.64163 1.93765 2.12945 2.25689 2.43929 2.96415 3.11537 3.16844 3.66917 3.88632 4.05578 4.17829 4.32197 4.37267 4.40956 4.44458 4.53349 4.63011 4.70336 4.71771 4.73047 4.91592 5.02453 5.09572 5.11634 5.19312 5.24326 5.35114 5.43773 5.51758 5.72792 6.16432 6.20563 6.27186 6.52251 6.63100 6.96495 7.12552 8.71131 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.007117 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.686049 B = 3933.238144 C = 5489.869734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.248 3.752 4 H 0.058 0.942 5 C -0.540 4.540 6 H 0.042 0.958 7 C 0.031 3.969 8 N -0.928 5.928 9 Si 0.926 3.074 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.223 1.223 13 N -0.672 5.672 14 C 0.479 3.521 15 C -0.314 4.314 16 C 0.260 3.740 17 C 0.120 3.880 18 O -0.407 6.407 19 C 0.026 3.974 20 N -0.534 5.534 21 C 0.470 3.530 22 N -0.570 5.570 23 C 0.258 3.742 24 N -0.380 5.380 25 N -0.373 5.373 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.273 0.727 32 H 0.406 0.594 33 H 0.183 0.817 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.259 0.934 -1.540 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.146 3.854 4 H 0.076 0.924 5 C -0.578 4.578 6 H 0.060 0.940 7 C -0.170 4.170 8 N -0.566 5.566 9 Si 0.748 3.252 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.145 1.145 13 N -0.294 5.294 14 C 0.249 3.751 15 C -0.348 4.348 16 C 0.106 3.894 17 C 0.043 3.957 18 O -0.326 6.326 19 C -0.070 4.070 20 N -0.260 5.260 21 C 0.110 3.890 22 N -0.307 5.307 23 C -0.044 4.044 24 N -0.211 5.211 25 N -0.160 5.160 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.242 0.758 33 H 0.200 0.800 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -17.132 1.151 -1.125 17.207 hybrid contribution 1.367 -0.099 -0.271 1.397 sum -15.764 1.052 -1.396 15.861 Atomic orbital electron populations 1.22176 0.94959 1.02026 1.01548 1.22086 0.95731 0.96848 1.02015 1.19380 0.94061 0.90784 0.81218 0.92428 1.21058 0.90010 1.52129 0.94643 0.93978 1.25801 0.96117 0.93080 1.02026 1.70001 1.11955 1.48899 1.25697 0.86041 0.80883 0.79961 0.78294 1.19410 1.20564 1.14533 1.45771 1.10618 1.54223 1.18830 1.18636 0.88208 0.85750 0.82476 1.21514 0.95135 1.17650 1.00473 1.21472 0.92360 0.84615 0.90993 1.21072 0.92216 0.99715 0.82728 1.87846 1.43172 1.77992 1.23547 1.23008 0.94585 1.02160 0.87221 1.67514 1.30608 1.28345 0.99556 1.22981 0.80827 0.91209 0.94014 1.70914 1.26052 1.31670 1.02020 1.27009 0.85042 0.90912 1.01398 1.78284 1.21685 1.30539 0.90634 1.48871 1.15450 1.40767 1.10901 0.91041 0.91762 0.94155 0.93034 0.91074 0.91770 0.75763 0.79965 0.87525 0.87941 0.92440 0.88655 0.92021 0.71324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 8.24 71.98 0.59 -3.86 16 2 C -0.13 -4.62 5.59 30.59 0.17 -4.44 16 3 C 0.25 10.19 1.85 44.24 0.08 10.27 16 4 H 0.06 2.34 3.63 -2.39 -0.01 2.34 16 5 C -0.54 -27.66 9.05 25.60 0.23 -27.43 16 6 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 7 C 0.03 1.64 5.47 84.66 0.46 2.10 16 8 N -0.93 -53.28 13.96 21.45 0.30 -52.98 16 9 Si 0.93 38.57 26.99 68.60 1.85 40.42 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.22 -8.05 6.82 99.48 0.68 -7.37 16 13 N -0.67 -26.45 5.14 -326.82 -1.68 -28.13 16 14 C 0.48 17.73 6.62 131.99 0.87 18.61 16 15 C -0.31 -10.28 6.06 22.50 0.14 -10.14 16 16 C 0.26 7.62 6.81 42.83 0.29 7.91 16 17 C 0.12 2.38 6.48 71.23 0.46 2.84 16 18 O -0.41 -8.45 9.19 -148.98 -1.37 -9.82 16 19 C 0.03 0.33 11.01 113.37 1.25 1.58 16 20 N -0.53 -18.12 10.38 -186.13 -1.93 -20.05 16 21 C 0.47 17.65 9.00 261.61 2.35 20.00 16 22 N -0.57 -20.34 11.26 -203.47 -2.29 -22.63 16 23 C 0.26 7.78 12.98 180.82 2.35 10.13 16 24 N -0.38 -13.69 12.76 -61.35 -0.78 -14.48 16 25 N -0.37 -14.16 3.93 -194.99 -0.77 -14.92 16 26 H 0.07 2.00 6.43 -2.39 -0.02 1.99 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.26 5.37 -2.39 -0.01 1.25 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.41 16.61 8.70 -92.71 -0.81 15.80 16 33 H 0.18 5.84 3.06 -2.91 -0.01 5.83 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.27 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -66.63 320.55 2.85 -63.77 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.27 Total: 31.25 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 9.25 Total: 27.56 kcal Atomic # 7 Polarization: -146.03 SS G_CDS: -7.15 Total: -153.18 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -1.37 Total: -9.82 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.85 Total: 40.42 kcal Total: -66.63 2.85 -63.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302129936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.052 kcal (2) G-P(sol) polarization free energy of solvation -66.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.31 seconds