Wall clock time and date at job start Tue Mar 31 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 H 1.09002 * 109.47070 * 55.00009 * 3 2 1 5 5 C 1.50703 * 109.46966 * 174.99919 * 3 2 1 6 6 H 1.07996 * 119.99751 * 120.00006 * 5 3 2 7 7 C 1.37877 * 120.00001 * 300.00469 * 5 3 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46942 * 119.99666 * 9 7 5 12 12 H 1.48504 * 109.46979 * 239.99580 * 9 7 5 13 13 N 1.46505 * 109.47411 * 294.99930 * 3 2 1 14 14 C 1.37715 * 119.99814 * 84.99899 * 13 3 2 15 15 C 1.38149 * 120.64783 * 0.02562 * 14 13 3 16 16 C 1.39251 * 119.02152 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.79038 * 179.97438 * 16 15 14 18 18 O 1.42906 * 109.46889 * 0.02562 * 17 16 15 19 19 C 1.42901 * 114.00075 * 179.97438 * 18 17 16 20 20 N 1.31657 * 120.42917 * 0.02562 * 16 15 14 21 21 C 1.33790 * 121.22523 * 359.97438 * 20 16 15 22 22 N 1.32855 * 132.41549 * 180.02562 * 21 20 16 23 23 C 1.32736 * 109.74021 * 179.34248 * 22 21 20 24 24 N 1.31073 * 109.62206 * 0.59020 * 23 22 21 25 25 N 1.36516 * 120.64059 * 179.72023 * 14 13 3 26 26 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47306 * 299.99810 * 1 2 3 28 28 H 1.09000 * 109.46927 * 59.99869 * 1 2 3 29 29 H 1.09000 * 109.47306 * 240.00190 * 2 1 3 30 30 H 1.08996 * 109.47287 * 119.99816 * 2 1 3 31 31 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99634 * 265.00306 * 13 3 2 33 33 H 1.08009 * 120.48976 * 359.97438 * 15 14 13 34 34 H 1.09003 * 109.47108 * 119.99628 * 17 16 15 35 35 H 1.08991 * 109.47672 * 240.00489 * 17 16 15 36 36 H 1.09000 * 109.47350 * 299.99973 * 19 18 17 37 37 H 1.09003 * 109.46809 * 59.99938 * 19 18 17 38 38 H 1.09004 * 109.47235 * 179.97438 * 19 18 17 39 39 H 1.07997 * 125.19084 * 180.08291 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.5987 1.5465 0.1942 11 1 6.3989 1.6168 2.6103 12 1 6.4971 -0.5174 1.4630 13 7 1.6524 2.0976 -1.2518 14 6 0.4085 2.6768 -1.3695 15 6 -0.4841 2.6484 -0.3154 16 6 -1.7326 3.2451 -0.4712 17 6 -2.7199 3.2237 0.6672 18 8 -2.1450 2.5414 1.7835 19 6 -3.0037 2.4651 2.9231 20 7 -2.0566 3.8269 -1.6069 21 6 -1.2028 3.8623 -2.6363 22 7 -1.2924 4.3775 -3.8576 23 6 -0.1604 4.1659 -4.5177 24 7 0.6767 3.5054 -3.7555 25 7 0.0359 3.2955 -2.5279 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0611 2.9499 32 1 2.2719 2.1232 -1.9978 33 1 -0.2175 2.1704 0.6158 34 1 -2.9657 4.2462 0.9541 35 1 -3.6263 2.7067 0.3524 36 1 -3.2555 3.4719 3.2565 37 1 -3.9162 1.9322 2.6555 38 1 -2.4948 1.9326 3.7266 39 1 0.0374 4.4819 -5.5313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302129937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:12 Heat of formation + Delta-G solvation = 96.203014 kcal Electronic energy + Delta-G solvation = -23802.501011 eV Core-core repulsion = 20362.269134 eV Total energy + Delta-G solvation = -3440.231877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.38993 -39.09352 -37.82677 -36.69906 -34.18054 -32.41167 -31.28620 -30.92711 -29.74142 -28.06406 -26.87646 -25.82925 -23.92225 -23.19848 -22.19363 -21.24261 -20.04752 -18.62532 -17.52771 -16.92481 -16.39375 -16.12485 -15.90600 -15.75303 -15.28494 -14.77549 -14.36906 -14.28962 -13.79743 -13.24033 -13.10981 -12.98269 -12.24851 -12.18716 -12.09642 -11.75478 -11.64730 -11.51894 -11.36631 -11.13737 -11.02113 -10.46019 -10.42762 -9.99288 -9.83659 -9.77040 -9.54321 -9.40552 -9.23263 -8.95880 -8.64698 -7.20397 -6.38214 -4.48522 1.09490 1.33584 2.17078 3.01458 3.11042 3.19579 3.20588 3.23354 3.63924 3.87486 4.17599 4.22325 4.51929 4.93120 4.95837 5.13702 5.22830 5.27350 5.33788 5.44140 5.69151 5.75338 5.92320 6.01646 6.05976 6.17268 6.23566 6.35997 6.57518 6.64268 6.74266 6.85104 6.91622 7.06765 7.09883 7.40515 7.48889 7.63020 7.83992 7.94521 8.15578 8.38965 8.55716 9.19370 10.67239 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.006024 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.391659 B = 4646.614518 C = 6297.691001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.268 3.732 4 H 0.058 0.942 5 C -0.540 4.540 6 H 0.065 0.935 7 C 0.072 3.928 8 N -0.879 5.879 9 Si 0.906 3.094 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.666 5.666 14 C 0.493 3.507 15 C -0.309 4.309 16 C 0.251 3.749 17 C 0.117 3.883 18 O -0.378 6.378 19 C 0.034 3.966 20 N -0.531 5.531 21 C 0.490 3.510 22 N -0.556 5.556 23 C 0.247 3.753 24 N -0.358 5.358 25 N -0.366 5.366 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.110 0.890 31 H 0.268 0.732 32 H 0.408 0.592 33 H 0.187 0.813 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 2.348 -0.568 9.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.167 3.833 4 H 0.075 0.925 5 C -0.579 4.579 6 H 0.083 0.917 7 C -0.132 4.132 8 N -0.516 5.516 9 Si 0.733 3.267 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.206 1.206 13 N -0.287 5.287 14 C 0.261 3.739 15 C -0.343 4.343 16 C 0.099 3.901 17 C 0.040 3.960 18 O -0.296 6.296 19 C -0.063 4.063 20 N -0.258 5.258 21 C 0.129 3.871 22 N -0.292 5.292 23 C -0.056 4.056 24 N -0.190 5.190 25 N -0.153 5.153 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.244 0.756 33 H 0.204 0.796 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.239 2.465 -0.904 9.604 hybrid contribution 1.733 -0.350 -0.042 1.768 sum -7.506 2.115 -0.947 7.855 Atomic orbital electron populations 1.22236 0.98325 0.99830 1.00754 1.22064 0.92643 0.99096 1.03431 1.19281 0.95774 0.89405 0.78850 0.92481 1.21126 0.89733 1.40067 1.06935 0.91673 1.24838 0.99122 0.94237 0.95030 1.69851 1.35425 1.36993 1.09304 0.86311 0.84062 0.78010 0.78344 1.19642 1.20609 1.20624 1.45885 1.10164 1.52852 1.19770 1.18394 0.88272 0.85215 0.81990 1.21478 0.94789 1.16946 1.01081 1.20810 0.92075 0.86583 0.90676 1.20901 0.93093 0.97964 0.84080 1.87928 1.41623 1.77521 1.22577 1.22777 0.94547 1.00741 0.88197 1.67393 1.31149 1.28210 0.99024 1.22548 0.80349 0.90927 0.93266 1.70880 1.25001 1.31437 1.01854 1.26027 0.86477 0.92867 1.00197 1.78256 1.21119 1.29089 0.90493 1.48784 1.15360 1.40427 1.10683 0.94614 0.91913 0.94493 0.94301 0.87208 0.92189 0.75635 0.79647 0.90116 0.90120 0.93901 0.93919 0.89043 0.76047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.23 37.16 0.31 -2.53 16 2 C -0.13 -2.82 5.45 -26.73 -0.15 -2.97 16 3 C 0.27 5.90 2.20 -69.08 -0.15 5.75 16 4 H 0.06 1.35 6.49 -51.93 -0.34 1.02 16 5 C -0.54 -13.17 8.73 -34.44 -0.30 -13.47 16 6 H 0.07 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -22.10 11.29 55.43 0.63 -21.48 16 9 Si 0.91 19.44 29.54 -169.99 -5.02 14.42 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.67 -13.37 5.13 -54.65 -0.28 -13.65 16 14 C 0.49 9.59 6.60 -152.98 -1.01 8.58 16 15 C -0.31 -5.59 6.06 -39.24 -0.24 -5.83 16 16 C 0.25 4.18 6.81 -82.29 -0.56 3.62 16 17 C 0.12 1.47 6.48 36.00 0.23 1.70 16 18 O -0.38 -4.98 9.19 -35.23 -0.32 -5.31 16 19 C 0.03 0.31 11.01 101.05 1.11 1.42 16 20 N -0.53 -9.84 10.38 -10.18 -0.11 -9.95 16 21 C 0.49 9.72 8.99 -323.17 -2.91 6.81 16 22 N -0.56 -10.51 11.26 -15.66 -0.18 -10.69 16 23 C 0.25 4.00 12.98 -91.95 -1.19 2.80 16 24 N -0.36 -6.64 12.76 29.26 0.37 -6.27 16 25 N -0.37 -7.20 3.93 -12.98 -0.05 -7.26 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.13 6.36 -51.93 -0.33 0.80 16 28 H 0.04 0.68 5.39 -51.93 -0.28 0.40 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.11 2.57 5.95 -51.93 -0.31 2.26 16 31 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 32 H 0.41 8.12 8.65 -40.82 -0.35 7.76 16 33 H 0.19 3.44 3.05 -52.48 -0.16 3.28 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.22 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 320.63 15.07 4.83 4.83 Total: -1.00 -28.26 320.63 -9.77 -38.03 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.69 Total: 9.74 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -4.95 Total: 7.58 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: 0.39 Total: -69.29 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.32 Total: -5.31 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.26 -9.77 -38.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302129937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.235 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds