Wall clock time and date at job start Tue Mar 31 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 H 1.09002 * 109.47070 * 55.00009 * 3 2 1 5 5 C 1.50703 * 109.46966 * 174.99919 * 3 2 1 6 6 H 1.07996 * 119.99751 * 120.00006 * 5 3 2 7 7 C 1.37877 * 120.00001 * 300.00469 * 5 3 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46942 * 119.99666 * 9 7 5 12 12 H 1.48504 * 109.46979 * 239.99580 * 9 7 5 13 13 N 1.46505 * 109.47411 * 294.99930 * 3 2 1 14 14 C 1.37715 * 119.99814 * 84.99899 * 13 3 2 15 15 C 1.38149 * 120.64783 * 0.02562 * 14 13 3 16 16 C 1.39251 * 119.02152 * 179.97438 * 15 14 13 17 17 C 1.50696 * 119.79038 * 179.97438 * 16 15 14 18 18 O 1.42906 * 109.46889 * 0.02562 * 17 16 15 19 19 C 1.42901 * 114.00075 * 179.97438 * 18 17 16 20 20 N 1.31657 * 120.42917 * 0.02562 * 16 15 14 21 21 C 1.33790 * 121.22523 * 359.97438 * 20 16 15 22 22 N 1.32855 * 132.41549 * 180.02562 * 21 20 16 23 23 C 1.32736 * 109.74021 * 179.34248 * 22 21 20 24 24 N 1.31073 * 109.62206 * 0.59020 * 23 22 21 25 25 N 1.36516 * 120.64059 * 179.72023 * 14 13 3 26 26 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47306 * 299.99810 * 1 2 3 28 28 H 1.09000 * 109.46927 * 59.99869 * 1 2 3 29 29 H 1.09000 * 109.47306 * 240.00190 * 2 1 3 30 30 H 1.08996 * 109.47287 * 119.99816 * 2 1 3 31 31 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99634 * 265.00306 * 13 3 2 33 33 H 1.08009 * 120.48976 * 359.97438 * 15 14 13 34 34 H 1.09003 * 109.47108 * 119.99628 * 17 16 15 35 35 H 1.08991 * 109.47672 * 240.00489 * 17 16 15 36 36 H 1.09000 * 109.47350 * 299.99973 * 19 18 17 37 37 H 1.09003 * 109.46809 * 59.99938 * 19 18 17 38 38 H 1.09004 * 109.47235 * 179.97438 * 19 18 17 39 39 H 1.07997 * 125.19084 * 180.08291 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.5987 1.5465 0.1942 11 1 6.3989 1.6168 2.6103 12 1 6.4971 -0.5174 1.4630 13 7 1.6524 2.0976 -1.2518 14 6 0.4085 2.6768 -1.3695 15 6 -0.4841 2.6484 -0.3154 16 6 -1.7326 3.2451 -0.4712 17 6 -2.7199 3.2237 0.6672 18 8 -2.1450 2.5414 1.7835 19 6 -3.0037 2.4651 2.9231 20 7 -2.0566 3.8269 -1.6069 21 6 -1.2028 3.8623 -2.6363 22 7 -1.2924 4.3775 -3.8576 23 6 -0.1604 4.1659 -4.5177 24 7 0.6767 3.5054 -3.7555 25 7 0.0359 3.2955 -2.5279 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0611 2.9499 32 1 2.2719 2.1232 -1.9978 33 1 -0.2175 2.1704 0.6158 34 1 -2.9657 4.2462 0.9541 35 1 -3.6263 2.7067 0.3524 36 1 -3.2555 3.4719 3.2565 37 1 -3.9162 1.9322 2.6555 38 1 -2.4948 1.9326 3.7266 39 1 0.0374 4.4819 -5.5313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302129937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:12 Heat of formation + Delta-G solvation = 81.582724 kcal Electronic energy + Delta-G solvation = -23803.134994 eV Core-core repulsion = 20362.269134 eV Total energy + Delta-G solvation = -3440.865861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = -1.36 seconds Orbital eigenvalues (eV) -43.80615 -40.47089 -39.00957 -38.03995 -35.77463 -34.11441 -32.66178 -32.44198 -31.22202 -29.24169 -28.49695 -26.71707 -25.47239 -24.80550 -23.47208 -22.70307 -21.66900 -20.14317 -18.95311 -18.39075 -17.83434 -17.65495 -16.97629 -16.89378 -16.70664 -16.08576 -15.96628 -15.50608 -15.31386 -14.80191 -14.41410 -14.15116 -13.81000 -13.64243 -13.31513 -13.23625 -13.22463 -12.91201 -12.84275 -12.72099 -12.18900 -12.16793 -12.05353 -11.65805 -11.22027 -11.18024 -10.93134 -10.86399 -10.75598 -10.46950 -10.27094 -8.71547 -8.25419 -6.41177 -0.30065 -0.09817 0.73164 1.40181 1.44203 1.53174 1.66651 1.98682 2.17054 2.40415 2.46501 3.05167 3.14224 3.20016 3.70446 3.91248 4.18426 4.29931 4.44928 4.45289 4.48752 4.59397 4.63129 4.72435 4.73548 4.74483 4.84214 4.99537 5.03453 5.20813 5.27510 5.33695 5.40109 5.47521 5.54409 5.72908 5.95028 6.11327 6.23565 6.35211 6.60472 6.73236 6.98666 7.29185 8.79467 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.006024 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.391659 B = 4646.614518 C = 6297.691001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.280 3.720 4 H 0.038 0.962 5 C -0.558 4.558 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.899 5.899 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.480 3.520 15 C -0.309 4.309 16 C 0.257 3.743 17 C 0.120 3.880 18 O -0.406 6.406 19 C 0.027 3.973 20 N -0.535 5.535 21 C 0.469 3.531 22 N -0.571 5.571 23 C 0.258 3.742 24 N -0.381 5.381 25 N -0.373 5.373 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.088 0.912 31 H 0.270 0.730 32 H 0.406 0.594 33 H 0.181 0.819 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 2.711 -0.679 10.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.178 3.822 4 H 0.056 0.944 5 C -0.596 4.596 6 H 0.077 0.923 7 C -0.169 4.169 8 N -0.536 5.536 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.202 1.202 13 N -0.294 5.294 14 C 0.250 3.750 15 C -0.342 4.342 16 C 0.104 3.896 17 C 0.043 3.957 18 O -0.325 6.325 19 C -0.068 4.068 20 N -0.262 5.262 21 C 0.109 3.891 22 N -0.308 5.308 23 C -0.044 4.044 24 N -0.212 5.212 25 N -0.160 5.160 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.242 0.758 33 H 0.198 0.802 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.223 2.836 -1.022 10.658 hybrid contribution 1.944 -0.406 -0.023 1.986 sum -8.280 2.430 -1.045 8.692 Atomic orbital electron populations 1.22072 0.96095 1.00786 1.00697 1.21897 0.94536 0.98164 1.01851 1.18939 0.94501 0.89679 0.79040 0.94437 1.21392 0.91119 1.40140 1.06963 0.92334 1.25487 1.02590 0.94008 0.94836 1.69937 1.36699 1.37352 1.09601 0.85451 0.79853 0.77955 0.78030 1.19784 1.20400 1.20225 1.45571 1.10753 1.54022 1.19075 1.18554 0.88196 0.85679 0.82580 1.21543 0.95277 1.16962 1.00457 1.21458 0.92242 0.84752 0.91163 1.21060 0.92235 0.99574 0.82843 1.87890 1.43255 1.77797 1.23568 1.22983 0.94750 1.02104 0.86982 1.67508 1.30955 1.28476 0.99284 1.22980 0.80712 0.91388 0.94029 1.70919 1.26151 1.31884 1.01806 1.27018 0.84966 0.90974 1.01423 1.78246 1.22146 1.30302 0.90526 1.48853 1.15524 1.40595 1.10980 0.93099 0.91626 0.94765 0.95060 0.89376 0.92021 0.75836 0.80167 0.87919 0.87724 0.92301 0.92115 0.88940 0.71230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 8.23 71.98 0.59 -4.49 16 2 C -0.13 -5.39 5.45 30.60 0.17 -5.22 16 3 C 0.28 12.63 2.20 44.25 0.10 12.73 16 4 H 0.04 1.84 6.49 -2.39 -0.02 1.82 16 5 C -0.56 -27.69 8.73 25.60 0.22 -27.47 16 6 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 7 C 0.03 1.64 5.29 84.65 0.45 2.09 16 8 N -0.90 -45.65 11.29 21.45 0.24 -45.40 16 9 Si 0.96 39.97 29.54 68.60 2.03 41.99 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 13 N -0.67 -27.58 5.13 -326.80 -1.68 -29.26 16 14 C 0.48 18.79 6.60 131.98 0.87 19.67 16 15 C -0.31 -11.12 6.06 22.49 0.14 -10.98 16 16 C 0.26 8.24 6.81 42.83 0.29 8.53 16 17 C 0.12 2.73 6.48 71.23 0.46 3.20 16 18 O -0.41 -10.00 9.19 -148.98 -1.37 -11.37 16 19 C 0.03 0.44 11.01 113.37 1.25 1.69 16 20 N -0.54 -19.22 10.38 -186.13 -1.93 -21.15 16 21 C 0.47 18.27 8.99 261.61 2.35 20.63 16 22 N -0.57 -20.84 11.26 -203.47 -2.29 -23.13 16 23 C 0.26 7.88 12.98 180.81 2.35 10.22 16 24 N -0.38 -13.86 12.76 -61.35 -0.78 -14.64 16 25 N -0.37 -14.61 3.93 -194.99 -0.77 -15.37 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 2.34 6.36 -2.39 -0.02 2.33 16 28 H 0.03 1.25 5.39 -2.39 -0.01 1.24 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 4.20 5.95 -2.39 -0.01 4.19 16 31 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 32 H 0.41 16.61 8.65 -92.71 -0.80 15.81 16 33 H 0.18 6.72 3.05 -2.91 -0.01 6.71 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.27 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -60.76 320.63 2.99 -57.77 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.30 Total: 29.97 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: 9.24 Total: 30.60 kcal Atomic # 7 Polarization: -141.75 SS G_CDS: -7.21 Total: -148.96 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -1.37 Total: -11.37 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 41.99 kcal Total: -60.76 2.99 -57.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302129937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.351 kcal (2) G-P(sol) polarization free energy of solvation -60.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.35 seconds