Wall clock time and date at job start Tue Mar 31 2020 08:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99449 * 2 1 4 4 H 1.48500 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47057 * 299.99702 * 3 2 1 6 6 H 1.48498 * 109.47500 * 59.99936 * 3 2 1 7 7 C 1.37870 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47304 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.47338 * 180.02562 * 10 9 7 12 12 C 1.35899 * 116.99864 * 180.02562 * 11 10 9 13 13 C 1.38744 * 120.05962 * 0.02562 * 12 11 10 14 14 C 1.38123 * 119.94541 * 179.97438 * 13 12 11 15 15 C 1.38287 * 120.05390 * 359.97438 * 14 13 12 16 16 C 1.38244 * 120.11305 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.96896 * 180.27455 * 16 15 14 18 18 N 1.46903 * 109.46981 * 269.72402 * 17 16 15 19 19 C 1.47442 * 110.99835 * 69.87760 * 18 17 16 20 20 C 1.54323 * 107.23149 * 123.26084 * 19 18 17 21 21 C 1.55140 * 103.02111 * 22.27786 * 20 19 18 22 22 H 1.09005 * 110.98897 * 82.44324 * 21 20 19 23 23 O 1.42898 * 110.98778 * 206.21927 * 21 20 19 24 24 C 1.47844 * 110.99908 * 190.71830 * 18 17 16 25 25 C 1.38165 * 120.05319 * 359.97438 * 16 15 14 26 26 H 0.96995 * 120.00852 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47030 * 59.99847 * 9 7 2 28 28 H 1.09001 * 109.47241 * 299.99889 * 9 7 2 29 29 H 1.08997 * 109.47348 * 59.99683 * 10 9 7 30 30 H 1.09001 * 109.46889 * 300.00114 * 10 9 7 31 31 H 1.08000 * 120.02701 * 359.95545 * 13 12 11 32 32 H 1.08001 * 119.96991 * 180.02562 * 14 13 12 33 33 H 1.08004 * 119.93990 * 180.02562 * 15 14 13 34 34 H 1.08998 * 109.47382 * 29.72704 * 17 16 15 35 35 H 1.08997 * 109.46933 * 149.72643 * 17 16 15 36 36 H 1.09001 * 109.88609 * 242.66015 * 19 18 17 37 37 H 1.08991 * 109.89044 * 3.84882 * 19 18 17 38 38 H 1.08993 * 110.70597 * 140.66599 * 20 19 18 39 39 H 1.09006 * 110.70301 * 263.72317 * 20 19 18 40 40 H 0.96697 * 114.00264 * 298.54559 * 23 21 20 41 41 H 1.09001 * 110.37669 * 332.46848 * 24 18 17 42 42 H 1.09008 * 110.37141 * 94.80510 * 24 18 17 43 43 H 1.08000 * 120.02391 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 8 1.5311 -4.8996 -0.0001 12 6 2.2714 -6.0392 0.0004 13 6 3.6570 -5.9679 0.0019 14 6 4.4071 -7.1277 0.0029 15 6 3.7782 -8.3592 0.0029 16 6 2.3977 -8.4330 0.0014 17 6 1.7157 -9.7768 0.0077 18 7 1.4900 -10.2179 -1.3753 19 6 2.7630 -10.5638 -2.0339 20 6 2.6423 -12.0219 -2.5249 21 6 1.1082 -12.2326 -2.6204 22 1 0.7178 -11.8393 -3.5591 23 8 0.7706 -13.6126 -2.4670 24 6 0.6024 -11.3995 -1.4165 25 6 1.6429 -7.2758 0.0004 26 1 -0.4851 0.8399 0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8904 30 1 2.8721 -3.6041 -0.8895 31 1 4.1486 -5.0063 0.0021 32 1 5.4857 -7.0726 0.0046 33 1 4.3665 -9.2650 0.0041 34 1 2.3462 -10.5020 0.5220 35 1 0.7591 -9.6964 0.5240 36 1 2.9344 -9.9002 -2.8814 37 1 3.5839 -10.4791 -1.3219 38 1 3.1091 -12.1391 -3.5028 39 1 3.0842 -12.7093 -1.8035 40 1 1.1481 -14.1878 -3.1465 41 1 0.6912 -11.9732 -0.4939 42 1 -0.4313 -11.0922 -1.5752 43 1 0.5645 -7.3340 -0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305737451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:08 Heat of formation + Delta-G solvation = -65.946866 kcal Electronic energy + Delta-G solvation = -22265.052398 eV Core-core repulsion = 18889.036767 eV Total energy + Delta-G solvation = -3376.015631 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10894 -39.31649 -37.38455 -36.14692 -33.38555 -32.54202 -30.83767 -30.04128 -29.28866 -28.43232 -25.72601 -24.79722 -22.57558 -21.77849 -21.47572 -21.11478 -20.07471 -17.97119 -17.45609 -16.47156 -16.23024 -15.84575 -15.60911 -15.31816 -15.17292 -14.58173 -14.47409 -14.26351 -13.83380 -13.59528 -13.44205 -12.87946 -12.61131 -12.57215 -12.31725 -12.22349 -11.91471 -11.59258 -11.36596 -11.26631 -11.14020 -11.02314 -10.88838 -10.68019 -10.43019 -10.36965 -9.85023 -9.65062 -9.27878 -8.77753 -8.55226 -8.44759 -7.82660 -6.09927 -4.14527 1.45404 1.68873 3.26714 3.33710 3.37284 3.41118 3.83992 3.87488 4.05584 4.25350 4.41077 4.46578 4.64322 4.78845 4.91469 4.93932 5.08958 5.16776 5.21983 5.26496 5.32919 5.37350 5.44526 5.47193 5.56846 5.66926 5.71225 5.79767 5.87248 6.04762 6.07596 6.19530 6.54985 6.57283 6.58559 6.70522 6.74290 6.77305 7.00108 7.18530 7.52043 7.65142 7.82399 8.08174 8.24592 8.91328 9.49798 11.01701 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033979 B = 0.002413 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.833637 B =11599.962928 C =12016.537489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.315 6.315 12 C 0.145 3.855 13 C -0.211 4.211 14 C -0.080 4.080 15 C -0.166 4.166 16 C -0.045 4.045 17 C 0.093 3.907 18 N -0.519 5.519 19 C 0.041 3.959 20 C -0.177 4.177 21 C 0.092 3.908 22 H 0.076 0.924 23 O -0.563 6.563 24 C 0.049 3.951 25 C -0.139 4.139 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.381 0.619 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 -25.605 -3.595 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.009 4.009 11 O -0.228 6.228 12 C 0.098 3.902 13 C -0.230 4.230 14 C -0.099 4.099 15 C -0.185 4.185 16 C -0.046 4.046 17 C -0.034 4.034 18 N -0.244 5.244 19 C -0.086 4.086 20 C -0.216 4.216 21 C 0.033 3.967 22 H 0.094 0.906 23 O -0.368 6.368 24 C -0.078 4.078 25 C -0.158 4.158 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.228 0.772 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.537 -24.801 -3.329 25.628 hybrid contribution 1.476 0.264 -0.092 1.502 sum 7.013 -24.536 -3.421 25.747 Atomic orbital electron populations 1.69981 1.06094 1.26861 1.49800 1.24995 0.94910 0.99398 0.94946 0.86433 0.79971 0.83277 0.77717 1.19655 1.20830 1.20844 1.21007 0.93070 0.90211 1.52080 0.92329 1.19131 0.94193 0.89034 0.98895 1.23321 0.97065 0.80860 0.99608 1.86178 1.36531 1.13195 1.86943 1.19189 0.90083 0.87538 0.93353 1.21382 0.93248 0.99794 1.08566 1.20829 0.99301 0.91887 0.97840 1.20767 0.93720 0.97276 1.06749 1.19298 0.93059 0.93566 0.98680 1.21185 1.00288 0.93016 0.88908 1.63632 1.12470 1.31935 1.16337 1.22839 0.91746 0.94298 0.99727 1.23522 0.97427 0.98152 1.02481 1.22959 0.93192 0.81848 0.98746 0.90648 1.86466 1.76848 1.17707 1.55802 1.22917 0.98171 0.89583 0.97154 1.20244 1.00292 0.89111 1.06193 0.92755 0.95370 0.95384 0.93168 0.93162 0.85290 0.86275 0.86892 0.93565 0.89578 0.90042 0.91768 0.90469 0.90661 0.77207 0.92487 0.89225 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 10 C 0.07 1.42 4.68 37.16 0.17 1.60 16 11 O -0.32 -6.62 10.14 -19.42 -0.20 -6.81 16 12 C 0.15 2.58 6.69 -39.22 -0.26 2.32 16 13 C -0.21 -3.33 9.04 -39.44 -0.36 -3.69 16 14 C -0.08 -1.05 10.04 -39.61 -0.40 -1.45 16 15 C -0.17 -2.01 8.74 -39.56 -0.35 -2.36 16 16 C -0.05 -0.59 5.10 -104.65 -0.53 -1.12 16 17 C 0.09 0.98 4.75 -4.98 -0.02 0.95 16 18 N -0.52 -5.37 5.15 -232.69 -1.20 -6.57 16 19 C 0.04 0.37 6.27 -2.83 -0.02 0.35 16 20 C -0.18 -1.23 6.67 -24.91 -0.17 -1.40 16 21 C 0.09 0.72 4.42 -24.60 -0.11 0.61 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 23 O -0.56 -4.31 13.47 -35.23 -0.47 -4.79 16 24 C 0.05 0.45 6.42 -2.30 -0.01 0.44 16 25 C -0.14 -2.16 9.64 -39.43 -0.38 -2.54 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.03 7.66 -51.93 -0.40 0.64 16 30 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 31 H 0.13 2.01 6.30 -52.49 -0.33 1.68 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.11 1.10 6.92 -52.48 -0.36 0.73 16 34 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 35 H 0.09 0.86 8.01 -51.93 -0.42 0.45 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.56 5.51 -51.93 -0.29 0.27 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.38 1.27 9.11 45.56 0.42 1.69 16 41 H 0.06 0.53 7.81 -51.93 -0.41 0.12 16 42 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 43 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -31.71 351.33 -9.79 -41.50 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.94 Total: 0.14 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -2.99 Total: -19.22 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: -0.46 Total: -32.42 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.67 Total: -11.60 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.71 -9.79 -41.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305737451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.448 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds