Wall clock time and date at job start Tue Mar 31 2020 08:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99449 * 2 1 4 4 H 1.48500 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47057 * 299.99702 * 3 2 1 6 6 H 1.48498 * 109.47500 * 59.99936 * 3 2 1 7 7 C 1.37870 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47304 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.47338 * 180.02562 * 10 9 7 12 12 C 1.35899 * 116.99864 * 180.02562 * 11 10 9 13 13 C 1.38744 * 120.05962 * 0.02562 * 12 11 10 14 14 C 1.38123 * 119.94541 * 179.97438 * 13 12 11 15 15 C 1.38287 * 120.05390 * 359.97438 * 14 13 12 16 16 C 1.38244 * 120.11305 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.96896 * 180.27455 * 16 15 14 18 18 N 1.46903 * 109.46981 * 269.72402 * 17 16 15 19 19 C 1.47442 * 110.99835 * 69.87760 * 18 17 16 20 20 C 1.54323 * 107.23149 * 123.26084 * 19 18 17 21 21 C 1.55140 * 103.02111 * 22.27786 * 20 19 18 22 22 H 1.09005 * 110.98897 * 82.44324 * 21 20 19 23 23 O 1.42898 * 110.98778 * 206.21927 * 21 20 19 24 24 C 1.47844 * 110.99908 * 190.71830 * 18 17 16 25 25 C 1.38165 * 120.05319 * 359.97438 * 16 15 14 26 26 H 0.96995 * 120.00852 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47030 * 59.99847 * 9 7 2 28 28 H 1.09001 * 109.47241 * 299.99889 * 9 7 2 29 29 H 1.08997 * 109.47348 * 59.99683 * 10 9 7 30 30 H 1.09001 * 109.46889 * 300.00114 * 10 9 7 31 31 H 1.08000 * 120.02701 * 359.95545 * 13 12 11 32 32 H 1.08001 * 119.96991 * 180.02562 * 14 13 12 33 33 H 1.08004 * 119.93990 * 180.02562 * 15 14 13 34 34 H 1.08998 * 109.47382 * 29.72704 * 17 16 15 35 35 H 1.08997 * 109.46933 * 149.72643 * 17 16 15 36 36 H 1.09001 * 109.88609 * 242.66015 * 19 18 17 37 37 H 1.08991 * 109.89044 * 3.84882 * 19 18 17 38 38 H 1.08993 * 110.70597 * 140.66599 * 20 19 18 39 39 H 1.09006 * 110.70301 * 263.72317 * 20 19 18 40 40 H 0.96697 * 114.00264 * 298.54559 * 23 21 20 41 41 H 1.09001 * 110.37669 * 332.46848 * 24 18 17 42 42 H 1.09008 * 110.37141 * 94.80510 * 24 18 17 43 43 H 1.08000 * 120.02391 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 8 1.5311 -4.8996 -0.0001 12 6 2.2714 -6.0392 0.0004 13 6 3.6570 -5.9679 0.0019 14 6 4.4071 -7.1277 0.0029 15 6 3.7782 -8.3592 0.0029 16 6 2.3977 -8.4330 0.0014 17 6 1.7157 -9.7768 0.0077 18 7 1.4900 -10.2179 -1.3753 19 6 2.7630 -10.5638 -2.0339 20 6 2.6423 -12.0219 -2.5249 21 6 1.1082 -12.2326 -2.6204 22 1 0.7178 -11.8393 -3.5591 23 8 0.7706 -13.6126 -2.4670 24 6 0.6024 -11.3995 -1.4165 25 6 1.6429 -7.2758 0.0004 26 1 -0.4851 0.8399 0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8904 30 1 2.8721 -3.6041 -0.8895 31 1 4.1486 -5.0063 0.0021 32 1 5.4857 -7.0726 0.0046 33 1 4.3665 -9.2650 0.0041 34 1 2.3462 -10.5020 0.5220 35 1 0.7591 -9.6964 0.5240 36 1 2.9344 -9.9002 -2.8814 37 1 3.5839 -10.4791 -1.3219 38 1 3.1091 -12.1391 -3.5028 39 1 3.0842 -12.7093 -1.8035 40 1 1.1481 -14.1878 -3.1465 41 1 0.6912 -11.9732 -0.4939 42 1 -0.4313 -11.0922 -1.5752 43 1 0.5645 -7.3340 -0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305737451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:06 Heat of formation + Delta-G solvation = -88.225773 kcal Electronic energy + Delta-G solvation = -22266.018484 eV Core-core repulsion = 18889.036767 eV Total energy + Delta-G solvation = -3376.981717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19871 -40.24714 -38.57387 -36.88621 -35.47567 -33.43112 -32.58570 -30.98030 -30.59933 -29.21936 -27.14492 -26.24607 -23.75517 -23.30207 -22.24757 -22.01041 -21.30923 -19.13738 -18.45961 -18.06010 -17.22106 -16.95549 -16.93806 -16.84549 -16.44423 -15.99469 -15.45542 -14.96047 -14.75219 -14.47458 -14.38495 -14.34491 -14.16043 -13.97945 -13.58969 -13.12333 -13.01250 -12.85310 -12.69056 -12.59840 -12.50589 -12.36206 -11.96410 -11.85121 -11.61693 -11.59609 -11.53440 -11.36043 -10.92879 -10.63660 -9.83409 -9.34413 -9.09148 -8.27307 -6.41186 0.34411 0.53523 1.40575 1.41747 1.55227 2.26893 2.50544 2.63428 3.03017 3.07030 3.32988 3.63299 3.78194 3.89166 3.92387 4.05361 4.12857 4.19836 4.26058 4.26339 4.32534 4.40251 4.49971 4.60005 4.64929 4.70937 4.72859 4.78949 4.86420 4.90061 5.03702 5.10059 5.20315 5.31023 5.44120 5.45787 5.51927 5.58691 5.68099 5.88558 5.95131 6.00788 6.07190 6.58041 6.73868 6.83898 7.29026 8.86147 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033979 B = 0.002413 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.833637 B =11599.962928 C =12016.537489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.027 3.973 10 C 0.086 3.914 11 O -0.343 6.343 12 C 0.106 3.894 13 C -0.222 4.222 14 C -0.076 4.076 15 C -0.152 4.152 16 C -0.040 4.040 17 C 0.096 3.904 18 N -0.536 5.536 19 C 0.038 3.962 20 C -0.165 4.165 21 C 0.095 3.905 22 H 0.076 0.924 23 O -0.577 6.577 24 C 0.047 3.953 25 C -0.153 4.153 26 H 0.267 0.733 27 H -0.003 1.003 28 H -0.002 1.002 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.127 0.873 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.399 0.601 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.222 -27.212 -3.846 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.011 3.989 11 O -0.258 6.258 12 C 0.061 3.939 13 C -0.241 4.241 14 C -0.094 4.094 15 C -0.170 4.170 16 C -0.041 4.041 17 C -0.031 4.031 18 N -0.262 5.262 19 C -0.090 4.090 20 C -0.204 4.204 21 C 0.035 3.965 22 H 0.094 0.906 23 O -0.385 6.385 24 C -0.081 4.081 25 C -0.172 4.172 26 H 0.076 0.924 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.249 0.751 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.305 -26.450 -3.591 27.955 hybrid contribution 0.593 0.574 -0.030 0.826 sum 8.898 -25.876 -3.621 27.602 Atomic orbital electron populations 1.70126 1.08079 1.28193 1.50675 1.26067 0.95849 1.03773 0.94168 0.85214 0.79041 0.77774 0.77887 1.18073 1.20207 1.20215 1.21419 0.93826 0.90961 1.52027 0.91078 1.18975 0.94575 0.91478 0.95950 1.22845 0.95363 0.80239 1.00427 1.86086 1.37562 1.13819 1.88320 1.19509 0.91162 0.86779 0.96449 1.21495 0.92467 1.01010 1.09136 1.21208 1.00830 0.91078 0.96278 1.21191 0.93462 0.98330 1.04063 1.19583 0.93658 0.93648 0.97171 1.21170 1.00496 0.91999 0.89453 1.63542 1.13541 1.32904 1.16191 1.22880 0.91210 0.95403 0.99472 1.23443 0.96754 0.96739 1.03444 1.22866 0.93762 0.81888 0.97938 0.90578 1.86423 1.77333 1.17807 1.56982 1.22909 0.97727 0.89487 0.97955 1.20376 1.00365 0.89456 1.06999 0.92426 0.98428 0.98357 0.92179 0.92290 0.85544 0.83024 0.83394 0.91606 0.89685 0.90997 0.91084 0.88799 0.90200 0.75061 0.92522 0.89956 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.44 0.28 -57.05 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.98 43.85 29.54 68.60 2.03 45.87 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.03 1.53 5.34 29.85 0.16 1.69 16 10 C 0.09 3.86 4.68 71.98 0.34 4.20 16 11 O -0.34 -15.20 10.14 -92.41 -0.94 -16.14 16 12 C 0.11 3.87 6.69 22.50 0.15 4.02 16 13 C -0.22 -6.87 9.04 22.36 0.20 -6.67 16 14 C -0.08 -1.77 10.04 22.25 0.22 -1.55 16 15 C -0.15 -3.18 8.74 22.28 0.19 -2.99 16 16 C -0.04 -0.97 5.10 -19.88 -0.10 -1.07 16 17 C 0.10 1.84 4.75 85.56 0.41 2.25 16 18 N -0.54 -10.31 5.15 -890.10 -4.58 -14.90 16 19 C 0.04 0.58 6.27 86.65 0.54 1.12 16 20 C -0.17 -1.84 6.67 31.78 0.21 -1.62 16 21 C 0.10 1.30 4.42 31.98 0.14 1.44 16 22 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 23 O -0.58 -7.67 13.47 -148.98 -2.01 -9.68 16 24 C 0.05 0.80 6.42 86.77 0.56 1.36 16 25 C -0.15 -4.83 9.64 22.37 0.22 -4.61 16 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 28 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 30 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 31 H 0.13 3.88 6.30 -2.91 -0.02 3.86 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.15 2.12 6.92 -2.91 -0.02 2.10 16 34 H 0.07 1.02 7.90 -2.39 -0.02 1.00 16 35 H 0.08 1.64 8.01 -2.39 -0.02 1.62 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 0.97 5.51 -2.39 -0.01 0.96 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.40 1.73 9.11 -74.06 -0.67 1.05 16 41 H 0.06 0.96 7.81 -2.39 -0.02 0.94 16 42 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.12 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -70.59 351.33 -0.95 -71.54 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.32 Total: 13.22 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 3.94 Total: -32.88 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -4.30 Total: -71.94 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -2.94 Total: -25.81 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -70.59 -0.95 -71.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305737451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.683 kcal (2) G-P(sol) polarization free energy of solvation -70.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds