Wall clock time and date at job start Tue Mar 31 2020 08:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86790 * 120.00435 * 2 1 4 4 H 1.48501 * 109.47401 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46902 * 299.99806 * 3 2 1 6 6 H 1.48500 * 109.47568 * 59.99457 * 3 2 1 7 7 C 1.38654 * 119.99295 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99628 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00660 * 0.02562 * 7 2 1 10 10 C 1.35753 * 117.00274 * 185.05322 * 9 7 2 11 11 C 1.38877 * 120.06572 * 354.46092 * 10 9 7 12 12 C 1.38104 * 119.92979 * 179.97438 * 11 10 9 13 13 C 1.38310 * 120.06539 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.92689 * 179.97438 * 13 12 11 15 15 N 1.46899 * 109.46907 * 90.00194 * 14 13 12 16 16 C 1.46902 * 111.00119 * 179.97438 * 15 14 13 17 17 H 1.08997 * 109.62823 * 35.39879 * 16 15 14 18 18 C 1.50282 * 109.63566 * 156.00525 * 16 15 14 19 19 C 1.54533 * 112.99922 * 211.71302 * 18 16 15 20 20 C 1.54354 * 111.49258 * 319.16291 * 19 18 16 21 21 O 1.39966 * 112.49644 * 319.16892 * 20 19 18 22 22 C 1.44233 * 112.37582 * 97.16862 * 21 20 19 23 23 C 1.45988 * 112.09248 * 277.41827 * 22 21 20 24 24 C 1.38303 * 120.13743 * 0.28155 * 13 12 11 25 25 C 1.38102 * 120.06851 * 359.48429 * 24 13 12 26 26 H 0.96998 * 119.99675 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.03671 * 359.95241 * 11 10 9 28 28 H 1.07993 * 119.96947 * 179.97438 * 12 11 10 29 29 H 1.08998 * 109.47626 * 330.00079 * 14 13 12 30 30 H 1.08999 * 109.46711 * 210.00154 * 14 13 12 31 31 H 1.00904 * 110.99743 * 56.04741 * 15 14 13 32 32 H 1.08997 * 108.78742 * 332.68798 * 18 16 15 33 33 H 1.08997 * 108.78680 * 91.00887 * 18 16 15 34 34 H 1.09002 * 109.13682 * 198.59819 * 19 18 16 35 35 H 1.08997 * 108.98778 * 79.63468 * 19 18 16 36 36 H 1.08995 * 108.85989 * 198.41902 * 20 19 18 37 37 H 1.09005 * 108.85671 * 79.91235 * 20 19 18 38 38 H 1.08995 * 108.95938 * 38.08831 * 22 21 20 39 39 H 1.08999 * 108.95497 * 156.74572 * 22 21 20 40 40 H 1.09000 * 109.02467 * 180.64913 * 23 22 21 41 41 H 1.08999 * 109.03306 * 299.48734 * 23 22 21 42 42 H 1.08002 * 119.96204 * 179.72188 * 24 13 12 43 43 H 1.07998 * 120.02998 * 180.25654 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8910 2.3963 -1.2125 6 1 1.8910 2.3965 1.2124 7 6 2.0087 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5047 0.1076 11 6 3.4570 -3.4396 0.0950 12 6 4.2021 -4.5972 0.2047 13 6 3.5682 -5.8203 0.3275 14 6 4.3844 -7.0815 0.4463 15 7 4.6568 -7.3567 1.8633 16 6 5.4518 -8.5822 2.0183 17 1 6.1576 -8.6677 1.1921 18 6 6.1973 -8.5391 3.3225 19 6 7.5552 -9.2747 3.2664 20 6 7.4514 -10.5937 2.4714 21 8 6.2709 -11.2934 2.7467 22 6 5.2443 -11.0463 1.7642 23 6 4.5165 -9.8090 2.0298 24 6 2.1869 -5.8888 0.3350 25 6 1.4362 -4.7344 0.2306 26 1 -0.4849 0.8401 -0.0004 27 1 3.9525 -2.4848 -0.0008 28 1 5.2809 -4.5473 0.1945 29 1 5.3266 -6.9563 -0.0871 30 1 3.8303 -7.9148 0.0143 31 1 3.7992 -7.4131 2.3921 32 1 6.3723 -7.4977 3.5924 33 1 5.5823 -9.0024 4.0939 34 1 7.8841 -9.4956 4.2818 35 1 8.2898 -8.6271 2.7880 36 1 8.3027 -11.2255 2.7244 37 1 7.4861 -10.3665 1.4059 38 1 5.7055 -10.9811 0.7788 39 1 4.5410 -11.8790 1.7698 40 1 3.7487 -9.6777 1.2674 41 1 4.0372 -9.8811 3.0061 42 1 1.6948 -6.8459 0.4265 43 1 0.3576 -4.7882 0.2407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311734999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:23 Heat of formation + Delta-G solvation = -53.043043 kcal Electronic energy + Delta-G solvation = -22618.565806 eV Core-core repulsion = 19243.109727 eV Total energy + Delta-G solvation = -3375.456080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -40.01810 -39.03744 -37.21621 -36.02977 -33.25862 -32.56892 -32.04045 -30.17053 -29.25510 -26.96103 -25.63179 -24.81319 -23.39270 -22.01341 -21.75730 -20.60228 -20.02679 -17.98205 -17.05960 -16.84350 -16.62247 -15.67029 -15.32343 -14.91345 -14.64041 -14.45225 -14.36247 -14.05427 -13.57885 -13.47831 -13.31381 -13.21313 -12.74702 -12.66861 -12.34357 -11.98571 -11.75330 -11.63458 -11.34963 -11.22671 -11.09950 -10.91438 -10.78049 -10.69189 -10.58609 -10.42961 -10.36684 -9.86911 -9.32639 -8.84147 -8.36157 -8.16787 -7.18510 -6.45499 -4.04151 2.21928 2.28825 3.12067 3.14019 3.19509 3.57451 3.96556 4.15412 4.34659 4.64995 4.69448 4.75353 4.83897 4.89597 5.08979 5.10527 5.13084 5.24612 5.27491 5.33094 5.37286 5.45276 5.49308 5.63903 5.70047 5.76788 5.83315 5.86300 5.89887 5.93956 6.07487 6.16472 6.21366 6.43224 6.69933 6.90863 6.95355 7.02609 7.13742 7.21558 7.39740 7.43749 7.48714 7.82977 7.99988 9.00459 9.70580 10.72679 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035538 B = 0.002615 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.692696 B =10704.710463 C =11209.045511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.049 4.049 13 C -0.186 4.186 14 C 0.118 3.882 15 N -0.677 5.677 16 C 0.090 3.910 17 H 0.074 0.926 18 C -0.111 4.111 19 C -0.144 4.144 20 C 0.057 3.943 21 O -0.371 6.371 22 C 0.065 3.935 23 C -0.186 4.186 24 C -0.069 4.069 25 C -0.194 4.194 26 H 0.269 0.731 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.343 0.657 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.229 -18.606 3.096 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.068 4.068 13 C -0.187 4.187 14 C -0.010 4.010 15 N -0.307 5.307 16 C -0.021 4.021 17 H 0.092 0.908 18 C -0.149 4.149 19 C -0.183 4.183 20 C -0.020 4.020 21 O -0.289 6.289 22 C -0.012 4.012 23 C -0.226 4.226 24 C -0.088 4.088 25 C -0.213 4.213 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.162 0.838 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.314 -18.072 3.250 22.108 hybrid contribution -0.218 0.403 -0.393 0.604 sum 12.096 -17.669 2.857 21.602 Atomic orbital electron populations 1.70052 1.05966 1.27556 1.46231 1.25297 0.95849 0.98854 0.96569 0.85642 0.79162 0.80355 0.78245 1.19074 1.20157 1.20131 1.21384 0.91841 0.80807 1.52682 0.88993 1.83976 1.34415 1.11493 1.78295 1.19395 0.90323 0.88027 0.92060 1.21172 0.93783 0.98958 1.11529 1.20569 0.98296 0.91564 0.96341 1.19109 0.93080 0.94010 1.12488 1.20648 0.98071 0.94040 0.88251 1.60799 1.24837 1.34382 1.10691 1.21290 0.94992 0.87303 0.98480 0.90752 1.21341 0.95369 1.01274 0.96943 1.22570 0.97936 0.96436 1.01309 1.22358 0.87816 0.93240 0.98627 1.87775 1.23151 1.67151 1.50847 1.21461 0.91015 0.97654 0.91077 1.21972 1.00205 0.96837 1.03543 1.20468 0.92979 0.96554 0.98760 1.20165 0.99467 0.90356 1.11314 0.92078 0.85602 0.87534 0.91325 0.95487 0.83848 0.90541 0.92175 0.91511 0.91316 0.90548 0.93310 0.93070 0.89643 0.90835 0.90736 0.87563 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.96 9.49 30.89 0.29 -10.67 16 8 H 0.09 2.40 5.20 -52.48 -0.27 2.12 16 9 O -0.18 -5.11 9.76 0.04 0.00 -5.11 16 10 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 11 C -0.24 -5.13 9.17 -39.39 -0.36 -5.49 16 12 C -0.05 -0.90 9.69 -39.60 -0.38 -1.29 16 13 C -0.19 -3.10 5.40 -104.57 -0.56 -3.66 16 14 C 0.12 1.53 5.59 -4.98 -0.03 1.51 16 15 N -0.68 -8.21 6.12 -108.73 -0.67 -8.87 16 16 C 0.09 0.89 2.13 -68.40 -0.15 0.74 16 17 H 0.07 0.74 6.77 -51.93 -0.35 0.39 16 18 C -0.11 -1.09 5.18 -27.28 -0.14 -1.24 16 19 C -0.14 -1.20 6.26 -25.22 -0.16 -1.36 16 20 C 0.06 0.46 6.09 37.87 0.23 0.69 16 21 O -0.37 -3.65 10.35 -32.84 -0.34 -3.99 16 22 C 0.06 0.53 6.11 33.83 0.21 0.74 16 23 C -0.19 -1.64 4.87 -29.39 -0.14 -1.78 16 24 C -0.07 -1.20 9.69 -39.61 -0.38 -1.58 16 25 C -0.19 -4.07 9.99 -39.40 -0.39 -4.47 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 28 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 30 H 0.03 0.32 7.27 -51.93 -0.38 -0.06 16 31 H 0.34 4.21 8.48 -39.29 -0.33 3.87 16 32 H 0.08 0.84 7.96 -51.93 -0.41 0.43 16 33 H 0.06 0.62 7.33 -51.93 -0.38 0.24 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.36 6.54 -51.93 -0.34 0.02 16 38 H 0.05 0.37 7.35 -51.93 -0.38 -0.01 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.64 7.24 -51.93 -0.38 0.26 16 41 H 0.07 0.69 7.53 -51.93 -0.39 0.30 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -30.33 342.93 -8.85 -39.18 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.42 Total: 6.06 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -2.33 Total: -23.37 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.09 Total: -33.49 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.34 Total: -9.10 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.33 -8.85 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311734999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.865 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.96 seconds