Wall clock time and date at job start Tue Mar 31 2020 08:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86790 * 120.00435 * 2 1 4 4 H 1.48501 * 109.47401 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46902 * 299.99806 * 3 2 1 6 6 H 1.48500 * 109.47568 * 59.99457 * 3 2 1 7 7 C 1.38654 * 119.99295 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99628 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00660 * 0.02562 * 7 2 1 10 10 C 1.35753 * 117.00274 * 185.05322 * 9 7 2 11 11 C 1.38877 * 120.06572 * 354.46092 * 10 9 7 12 12 C 1.38104 * 119.92979 * 179.97438 * 11 10 9 13 13 C 1.38310 * 120.06539 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.92689 * 179.97438 * 13 12 11 15 15 N 1.46899 * 109.46907 * 90.00194 * 14 13 12 16 16 C 1.46902 * 111.00119 * 179.97438 * 15 14 13 17 17 H 1.08997 * 109.62823 * 35.39879 * 16 15 14 18 18 C 1.50282 * 109.63566 * 156.00525 * 16 15 14 19 19 C 1.54533 * 112.99922 * 211.71302 * 18 16 15 20 20 C 1.54354 * 111.49258 * 319.16291 * 19 18 16 21 21 O 1.39966 * 112.49644 * 319.16892 * 20 19 18 22 22 C 1.44233 * 112.37582 * 97.16862 * 21 20 19 23 23 C 1.45988 * 112.09248 * 277.41827 * 22 21 20 24 24 C 1.38303 * 120.13743 * 0.28155 * 13 12 11 25 25 C 1.38102 * 120.06851 * 359.48429 * 24 13 12 26 26 H 0.96998 * 119.99675 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.03671 * 359.95241 * 11 10 9 28 28 H 1.07993 * 119.96947 * 179.97438 * 12 11 10 29 29 H 1.08998 * 109.47626 * 330.00079 * 14 13 12 30 30 H 1.08999 * 109.46711 * 210.00154 * 14 13 12 31 31 H 1.00904 * 110.99743 * 56.04741 * 15 14 13 32 32 H 1.08997 * 108.78742 * 332.68798 * 18 16 15 33 33 H 1.08997 * 108.78680 * 91.00887 * 18 16 15 34 34 H 1.09002 * 109.13682 * 198.59819 * 19 18 16 35 35 H 1.08997 * 108.98778 * 79.63468 * 19 18 16 36 36 H 1.08995 * 108.85989 * 198.41902 * 20 19 18 37 37 H 1.09005 * 108.85671 * 79.91235 * 20 19 18 38 38 H 1.08995 * 108.95938 * 38.08831 * 22 21 20 39 39 H 1.08999 * 108.95497 * 156.74572 * 22 21 20 40 40 H 1.09000 * 109.02467 * 180.64913 * 23 22 21 41 41 H 1.08999 * 109.03306 * 299.48734 * 23 22 21 42 42 H 1.08002 * 119.96204 * 179.72188 * 24 13 12 43 43 H 1.07998 * 120.02998 * 180.25654 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3462 0.0006 5 1 1.8910 2.3963 -1.2125 6 1 1.8910 2.3965 1.2124 7 6 2.0087 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0698 -3.5047 0.1076 11 6 3.4570 -3.4396 0.0950 12 6 4.2021 -4.5972 0.2047 13 6 3.5682 -5.8203 0.3275 14 6 4.3844 -7.0815 0.4463 15 7 4.6568 -7.3567 1.8633 16 6 5.4518 -8.5822 2.0183 17 1 6.1576 -8.6677 1.1921 18 6 6.1973 -8.5391 3.3225 19 6 7.5552 -9.2747 3.2664 20 6 7.4514 -10.5937 2.4714 21 8 6.2709 -11.2934 2.7467 22 6 5.2443 -11.0463 1.7642 23 6 4.5165 -9.8090 2.0298 24 6 2.1869 -5.8888 0.3350 25 6 1.4362 -4.7344 0.2306 26 1 -0.4849 0.8401 -0.0004 27 1 3.9525 -2.4848 -0.0008 28 1 5.2809 -4.5473 0.1945 29 1 5.3266 -6.9563 -0.0871 30 1 3.8303 -7.9148 0.0143 31 1 3.7992 -7.4131 2.3921 32 1 6.3723 -7.4977 3.5924 33 1 5.5823 -9.0024 4.0939 34 1 7.8841 -9.4956 4.2818 35 1 8.2898 -8.6271 2.7880 36 1 8.3027 -11.2255 2.7244 37 1 7.4861 -10.3665 1.4059 38 1 5.7055 -10.9811 0.7788 39 1 4.5410 -11.8790 1.7698 40 1 3.7487 -9.6777 1.2674 41 1 4.0372 -9.8811 3.0061 42 1 1.6948 -6.8459 0.4265 43 1 0.3576 -4.7882 0.2407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311734999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:21 Heat of formation + Delta-G solvation = -72.767866 kcal Electronic energy + Delta-G solvation = -22619.421139 eV Core-core repulsion = 19243.109727 eV Total energy + Delta-G solvation = -3376.311412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.89360 -40.57129 -38.64968 -37.16993 -34.44493 -33.93110 -33.18147 -31.77751 -30.56044 -27.90994 -27.33767 -25.86710 -24.44072 -23.61483 -22.46137 -22.01998 -20.90314 -19.83082 -18.82413 -17.68466 -17.30378 -16.64265 -16.45059 -16.16714 -16.07983 -15.81437 -15.53200 -15.31922 -15.14091 -14.69098 -14.60029 -14.26672 -14.05902 -13.79366 -13.59523 -13.14193 -13.10852 -12.90856 -12.61201 -12.40530 -12.26249 -12.12772 -12.08454 -11.83298 -11.81616 -11.52309 -11.18453 -11.15979 -10.79968 -10.52269 -9.76475 -9.29381 -8.88872 -8.47566 -6.15487 0.61494 0.68876 1.34876 1.43050 1.53240 2.17603 2.78561 2.98390 3.10432 3.45227 3.53047 3.64891 3.98728 4.06633 4.09630 4.12401 4.18884 4.21799 4.26547 4.42041 4.48889 4.53033 4.61461 4.64518 4.69838 4.77534 4.82416 4.87116 4.97316 5.09019 5.11287 5.16789 5.17821 5.26328 5.31588 5.33586 5.36994 5.57879 5.73068 5.83429 6.03445 6.16689 6.27444 6.35038 6.50020 6.97554 7.78766 8.76048 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035538 B = 0.002615 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.692696 B =10704.710463 C =11209.045511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.245 4.245 12 C -0.051 4.051 13 C -0.157 4.157 14 C 0.123 3.877 15 N -0.687 5.687 16 C 0.094 3.906 17 H 0.081 0.919 18 C -0.109 4.109 19 C -0.142 4.142 20 C 0.054 3.946 21 O -0.390 6.390 22 C 0.061 3.939 23 C -0.179 4.179 24 C -0.059 4.059 25 C -0.205 4.205 26 H 0.272 0.728 27 H 0.115 0.885 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.342 0.658 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.147 0.853 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.708 -20.923 2.954 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.264 4.264 12 C -0.069 4.069 13 C -0.158 4.158 14 C -0.005 4.005 15 N -0.317 5.317 16 C -0.016 4.016 17 H 0.099 0.901 18 C -0.147 4.147 19 C -0.180 4.180 20 C -0.024 4.024 21 O -0.309 6.309 22 C -0.016 4.016 23 C -0.218 4.218 24 C -0.078 4.078 25 C -0.225 4.225 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.152 0.848 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.161 0.839 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.165 0.835 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.832 -20.453 3.112 25.456 hybrid contribution -0.858 0.741 -0.295 1.172 sum 13.973 -19.713 2.817 24.326 Atomic orbital electron populations 1.70192 1.08013 1.28712 1.49075 1.26590 0.96866 1.02735 0.95918 0.84526 0.78223 0.74847 0.78589 1.17520 1.19247 1.19357 1.21849 0.92471 0.81486 1.53031 0.88219 1.83938 1.35993 1.12622 1.81492 1.19955 0.91598 0.87993 0.94170 1.21255 0.93118 1.00030 1.11988 1.20907 0.99606 0.90987 0.95430 1.19638 0.93225 0.95137 1.07838 1.20641 0.98248 0.92428 0.89227 1.60729 1.25014 1.36093 1.09911 1.21278 0.94919 0.86826 0.98569 0.90065 1.21305 0.96157 1.00468 0.96767 1.22558 0.97091 0.96722 1.01647 1.22462 0.87710 0.93054 0.99139 1.87761 1.23917 1.67552 1.51677 1.21564 0.91016 0.97644 0.91338 1.21890 1.00011 0.96529 1.03365 1.20891 0.93364 0.96813 0.96694 1.20445 0.99895 0.90629 1.11492 0.91850 0.86672 0.84769 0.90103 0.93213 0.83942 0.91996 0.93080 0.91528 0.90515 0.89486 0.92274 0.91789 0.88689 0.90105 0.91562 0.83522 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.11 13.67 21.61 0.30 -56.81 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 43.34 29.55 68.60 2.03 45.37 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.41 -24.34 9.49 67.92 0.64 -23.69 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 9 O -0.23 -14.25 9.76 -22.77 -0.22 -14.48 16 10 C 0.11 5.69 6.65 22.57 0.15 5.84 16 11 C -0.24 -10.80 9.17 22.39 0.21 -10.60 16 12 C -0.05 -1.76 9.69 22.26 0.22 -1.55 16 13 C -0.16 -4.71 5.40 -19.83 -0.11 -4.82 16 14 C 0.12 2.61 5.59 85.56 0.48 3.09 16 15 N -0.69 -14.15 6.12 -497.92 -3.05 -17.19 16 16 C 0.09 1.54 2.13 44.47 0.09 1.64 16 17 H 0.08 1.27 6.77 -2.39 -0.02 1.25 16 18 C -0.11 -1.90 5.18 30.24 0.16 -1.75 16 19 C -0.14 -2.01 6.26 31.58 0.20 -1.81 16 20 C 0.05 0.71 6.09 72.44 0.44 1.15 16 21 O -0.39 -6.63 10.35 -140.42 -1.45 -8.09 16 22 C 0.06 0.79 6.11 69.83 0.43 1.22 16 23 C -0.18 -2.53 4.87 28.87 0.14 -2.39 16 24 C -0.06 -1.90 9.69 22.25 0.22 -1.69 16 25 C -0.21 -8.69 9.99 22.39 0.22 -8.47 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 28 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 29 H 0.08 1.62 8.00 -2.39 -0.02 1.60 16 30 H 0.05 0.89 7.27 -2.39 -0.02 0.88 16 31 H 0.34 7.24 8.48 -89.69 -0.76 6.48 16 32 H 0.06 1.26 7.96 -2.39 -0.02 1.24 16 33 H 0.05 0.97 7.33 -2.39 -0.02 0.96 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.65 6.54 -2.38 -0.02 0.64 16 38 H 0.06 0.68 7.35 -2.39 -0.02 0.66 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.04 7.24 -2.39 -0.02 1.03 16 41 H 0.07 1.06 7.53 -2.39 -0.02 1.04 16 42 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 43 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -70.39 342.93 1.80 -68.59 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.25 Total: 27.35 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 3.95 Total: -44.74 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -2.75 Total: -74.00 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.68 Total: -22.56 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.39 1.80 -68.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311734999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.180 kcal (2) G-P(sol) polarization free energy of solvation -70.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds