Wall clock time and date at job start Tue Mar 31 2020 08:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 119.99742 * 2 1 4 4 H 1.48502 * 109.47216 * 269.99749 * 3 2 1 5 5 H 1.48498 * 109.47352 * 29.99338 * 3 2 1 6 6 H 1.48493 * 109.47479 * 149.99765 * 3 2 1 7 7 C 1.38651 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99993 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00166 * 185.05869 * 9 7 2 11 11 C 1.38881 * 120.06643 * 354.46019 * 10 9 7 12 12 C 1.38099 * 119.92874 * 179.97438 * 11 10 9 13 13 C 1.38294 * 120.07256 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.93623 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47173 * 89.99701 * 14 13 12 16 16 C 1.46898 * 111.00061 * 180.02562 * 15 14 13 17 17 H 1.09002 * 108.69883 * 326.64515 * 16 15 14 18 18 C 1.54204 * 108.89491 * 208.29915 * 16 15 14 19 19 C 1.53472 * 111.69475 * 197.56600 * 18 16 15 20 20 C 1.51078 * 111.29082 * 319.21633 * 19 18 16 21 21 O 1.43392 * 107.45892 * 94.48808 * 20 19 18 22 22 C 1.36326 * 118.03527 * 276.34598 * 21 20 19 23 23 C 1.50980 * 108.81446 * 85.00153 * 16 15 14 24 24 C 1.38305 * 120.13758 * 0.27340 * 13 12 11 25 25 C 1.38099 * 120.06778 * 359.49121 * 24 13 12 26 26 H 0.97002 * 120.00735 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.03714 * 0.02562 * 11 10 9 28 28 H 1.08007 * 119.96478 * 180.02562 * 12 11 10 29 29 H 1.09006 * 109.47256 * 330.00247 * 14 13 12 30 30 H 1.09000 * 109.47702 * 209.99966 * 14 13 12 31 31 H 1.00896 * 111.00142 * 56.05174 * 15 14 13 32 32 H 1.09004 * 109.04482 * 76.98102 * 18 16 15 33 33 H 1.09002 * 108.94798 * 318.08571 * 18 16 15 34 34 H 1.08999 * 109.11600 * 198.74857 * 19 18 16 35 35 H 1.08996 * 109.06252 * 79.65216 * 19 18 16 36 36 H 1.09002 * 109.86099 * 334.99732 * 20 19 18 37 37 H 1.09002 * 109.85698 * 213.97826 * 20 19 18 38 38 H 1.09000 * 109.15520 * 301.46961 * 22 21 20 39 39 H 1.09000 * 109.15539 * 182.29426 * 22 21 20 40 40 H 1.08999 * 109.51216 * 93.26182 * 23 16 15 41 41 H 1.09002 * 109.51560 * 333.16069 * 23 16 15 42 42 H 1.07995 * 119.96533 * 179.72144 * 24 13 12 43 43 H 1.07993 * 120.03909 * 180.25135 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5470 1.4404 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1077 11 6 3.4572 -3.4393 0.0952 12 6 4.2024 -4.5968 0.2050 13 6 3.5688 -5.8199 0.3278 14 6 4.3849 -7.0811 0.4468 15 7 4.6574 -7.3562 1.8638 16 6 5.4534 -8.5810 2.0188 17 1 5.1738 -9.2814 1.2317 18 6 5.1307 -9.2167 3.3861 19 6 6.2046 -10.2283 3.8091 20 6 6.6593 -11.0675 2.6380 21 8 7.8284 -10.4439 2.0900 22 6 7.6541 -9.4214 1.2052 23 6 6.9149 -8.2346 1.8654 24 6 2.1875 -5.8886 0.3354 25 6 1.4366 -4.7343 0.2309 26 1 -0.4851 0.8400 -0.0004 27 1 3.9527 -2.4844 0.0006 28 1 5.2813 -4.5467 0.1958 29 1 5.3273 -6.9558 -0.0866 30 1 3.8310 -7.9146 0.0148 31 1 3.7999 -7.4127 2.3926 32 1 4.1683 -9.7248 3.3239 33 1 5.0688 -8.4289 4.1369 34 1 5.7955 -10.8821 4.5793 35 1 7.0604 -9.6897 4.2159 36 1 5.8731 -11.1079 1.8840 37 1 6.9011 -12.0751 2.9764 38 1 7.0709 -9.7785 0.3564 39 1 8.6285 -9.0841 0.8520 40 1 7.3470 -8.0368 2.8464 41 1 7.0153 -7.3488 1.2381 42 1 1.6955 -6.8457 0.4269 43 1 0.3581 -4.7882 0.2410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311735000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:30 Heat of formation + Delta-G solvation = -52.532952 kcal Electronic energy + Delta-G solvation = -22641.211433 eV Core-core repulsion = 19265.777473 eV Total energy + Delta-G solvation = -3375.433960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.15752 -39.05178 -37.26926 -36.08069 -33.60919 -32.37056 -31.68547 -30.17474 -29.16385 -26.84760 -25.71796 -25.00123 -23.41865 -22.07624 -21.93358 -20.46233 -19.72284 -17.98156 -16.99434 -16.86769 -16.62778 -16.00199 -15.44080 -15.06294 -14.65453 -14.47838 -14.19938 -14.04890 -13.64316 -13.52880 -13.34522 -13.06074 -12.68575 -12.56756 -12.46812 -12.06292 -11.86083 -11.58823 -11.37853 -11.17847 -10.94462 -10.87824 -10.74448 -10.68092 -10.55945 -10.45064 -10.39581 -9.72428 -9.32944 -8.83716 -8.38592 -8.16891 -7.18584 -6.45295 -4.04096 2.21899 2.28828 3.12663 3.13990 3.18814 3.55779 3.96704 4.10156 4.44125 4.59967 4.63322 4.70264 4.84997 4.92669 5.09051 5.15152 5.22923 5.25577 5.29636 5.32397 5.35909 5.44482 5.48934 5.62101 5.73326 5.73750 5.83247 5.85808 5.89433 5.91180 5.95730 6.19546 6.22819 6.43066 6.69924 6.90950 7.02179 7.12700 7.21289 7.33604 7.39828 7.43725 7.49242 7.82947 7.99945 9.00487 9.70511 10.72761 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033885 B = 0.002619 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.134498 B =10687.531711 C =11019.084330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.049 4.049 13 C -0.185 4.185 14 C 0.118 3.882 15 N -0.682 5.682 16 C 0.085 3.915 17 H 0.035 0.965 18 C -0.124 4.124 19 C -0.149 4.149 20 C 0.066 3.934 21 O -0.386 6.386 22 C 0.074 3.926 23 C -0.152 4.152 24 C -0.069 4.069 25 C -0.194 4.194 26 H 0.270 0.730 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.342 0.658 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.033 0.967 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.763 -18.799 4.182 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.067 4.067 13 C -0.186 4.186 14 C -0.010 4.010 15 N -0.313 5.313 16 C -0.024 4.024 17 H 0.053 0.947 18 C -0.162 4.162 19 C -0.187 4.187 20 C -0.010 4.010 21 O -0.304 6.304 22 C -0.004 4.004 23 C -0.191 4.191 24 C -0.088 4.088 25 C -0.213 4.213 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.125 0.875 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.160 0.840 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.124 0.876 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.028 -18.213 4.232 22.233 hybrid contribution -0.603 0.399 -0.269 0.772 sum 11.424 -17.814 3.963 21.530 Atomic orbital electron populations 1.70037 1.05970 1.27675 1.46141 1.25291 0.95842 0.98847 0.96547 0.85711 0.78953 0.80064 0.78710 1.19883 1.20250 1.19158 1.21333 0.91819 0.80817 1.52802 0.89045 1.83974 1.34398 1.11485 1.78289 1.19395 0.90323 0.88025 0.92069 1.21169 0.93781 0.98949 1.11540 1.20560 0.98285 0.91561 0.96340 1.19102 0.93079 0.93999 1.12466 1.20664 0.97992 0.94091 0.88208 1.60731 1.24409 1.35412 1.10789 1.21500 0.94430 0.90369 0.96119 0.94676 1.22076 0.98362 0.98596 0.97202 1.21936 0.99714 0.98352 0.98721 1.22473 0.87670 0.95995 0.94866 1.86330 1.33097 1.49338 1.61664 1.21814 1.00858 0.87034 0.90711 1.22350 0.94699 0.99353 1.02673 1.20468 0.92984 0.96553 0.98775 1.20163 0.99459 0.90349 1.11332 0.92023 0.85599 0.87547 0.91248 0.95592 0.83989 0.92157 0.90702 0.91093 0.90395 0.92706 0.89113 0.94840 0.88964 0.90724 0.90048 0.87577 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.60 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -11.00 9.49 30.88 0.29 -10.70 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.11 9.76 0.05 0.00 -5.11 16 10 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 11 C -0.24 -5.15 9.17 -39.39 -0.36 -5.51 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 13 C -0.19 -3.12 5.40 -104.58 -0.56 -3.69 16 14 C 0.12 1.58 5.51 -4.98 -0.03 1.55 16 15 N -0.68 -8.40 6.19 -108.40 -0.67 -9.07 16 16 C 0.09 0.86 2.03 -68.10 -0.14 0.73 16 17 H 0.04 0.36 6.19 -51.93 -0.32 0.04 16 18 C -0.12 -1.08 5.13 -25.86 -0.13 -1.21 16 19 C -0.15 -1.14 5.43 -27.45 -0.15 -1.29 16 20 C 0.07 0.51 6.48 36.19 0.23 0.74 16 21 O -0.39 -3.80 9.90 -20.79 -0.21 -4.01 16 22 C 0.07 0.67 6.39 38.01 0.24 0.92 16 23 C -0.15 -1.53 5.25 -26.89 -0.14 -1.67 16 24 C -0.07 -1.21 9.69 -39.61 -0.38 -1.60 16 25 C -0.19 -4.09 9.99 -39.39 -0.39 -4.49 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 28 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.07 0.90 7.36 -51.93 -0.38 0.52 16 30 H 0.03 0.33 7.98 -51.93 -0.41 -0.09 16 31 H 0.34 4.20 8.28 -39.29 -0.33 3.87 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.67 7.31 -51.93 -0.38 0.29 16 36 H 0.05 0.41 6.68 -51.93 -0.35 0.07 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.03 0.30 7.68 -51.93 -0.40 -0.10 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.79 7.16 -51.93 -0.37 0.42 16 41 H 0.08 0.89 7.17 -51.93 -0.37 0.52 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 43 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -30.39 342.03 -8.65 -39.04 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.40 Total: 6.07 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -2.26 Total: -23.00 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.09 Total: -33.71 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.21 Total: -9.12 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.39 -8.65 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311735000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.493 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds