Wall clock time and date at job start Tue Mar 31 2020 08:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 119.99742 * 2 1 4 4 H 1.48502 * 109.47216 * 269.99749 * 3 2 1 5 5 H 1.48498 * 109.47352 * 29.99338 * 3 2 1 6 6 H 1.48493 * 109.47479 * 149.99765 * 3 2 1 7 7 C 1.38651 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99993 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00166 * 185.05869 * 9 7 2 11 11 C 1.38881 * 120.06643 * 354.46019 * 10 9 7 12 12 C 1.38099 * 119.92874 * 179.97438 * 11 10 9 13 13 C 1.38294 * 120.07256 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.93623 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47173 * 89.99701 * 14 13 12 16 16 C 1.46898 * 111.00061 * 180.02562 * 15 14 13 17 17 H 1.09002 * 108.69883 * 326.64515 * 16 15 14 18 18 C 1.54204 * 108.89491 * 208.29915 * 16 15 14 19 19 C 1.53472 * 111.69475 * 197.56600 * 18 16 15 20 20 C 1.51078 * 111.29082 * 319.21633 * 19 18 16 21 21 O 1.43392 * 107.45892 * 94.48808 * 20 19 18 22 22 C 1.36326 * 118.03527 * 276.34598 * 21 20 19 23 23 C 1.50980 * 108.81446 * 85.00153 * 16 15 14 24 24 C 1.38305 * 120.13758 * 0.27340 * 13 12 11 25 25 C 1.38099 * 120.06778 * 359.49121 * 24 13 12 26 26 H 0.97002 * 120.00735 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.03714 * 0.02562 * 11 10 9 28 28 H 1.08007 * 119.96478 * 180.02562 * 12 11 10 29 29 H 1.09006 * 109.47256 * 330.00247 * 14 13 12 30 30 H 1.09000 * 109.47702 * 209.99966 * 14 13 12 31 31 H 1.00896 * 111.00142 * 56.05174 * 15 14 13 32 32 H 1.09004 * 109.04482 * 76.98102 * 18 16 15 33 33 H 1.09002 * 108.94798 * 318.08571 * 18 16 15 34 34 H 1.08999 * 109.11600 * 198.74857 * 19 18 16 35 35 H 1.08996 * 109.06252 * 79.65216 * 19 18 16 36 36 H 1.09002 * 109.86099 * 334.99732 * 20 19 18 37 37 H 1.09002 * 109.85698 * 213.97826 * 20 19 18 38 38 H 1.09000 * 109.15520 * 301.46961 * 22 21 20 39 39 H 1.09000 * 109.15539 * 182.29426 * 22 21 20 40 40 H 1.08999 * 109.51216 * 93.26182 * 23 16 15 41 41 H 1.09002 * 109.51560 * 333.16069 * 23 16 15 42 42 H 1.07995 * 119.96533 * 179.72144 * 24 13 12 43 43 H 1.07993 * 120.03909 * 180.25135 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5470 1.4404 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0700 -3.5045 0.1077 11 6 3.4572 -3.4393 0.0952 12 6 4.2024 -4.5968 0.2050 13 6 3.5688 -5.8199 0.3278 14 6 4.3849 -7.0811 0.4468 15 7 4.6574 -7.3562 1.8638 16 6 5.4534 -8.5810 2.0188 17 1 5.1738 -9.2814 1.2317 18 6 5.1307 -9.2167 3.3861 19 6 6.2046 -10.2283 3.8091 20 6 6.6593 -11.0675 2.6380 21 8 7.8284 -10.4439 2.0900 22 6 7.6541 -9.4214 1.2052 23 6 6.9149 -8.2346 1.8654 24 6 2.1875 -5.8886 0.3354 25 6 1.4366 -4.7343 0.2309 26 1 -0.4851 0.8400 -0.0004 27 1 3.9527 -2.4844 0.0006 28 1 5.2813 -4.5467 0.1958 29 1 5.3273 -6.9558 -0.0866 30 1 3.8310 -7.9146 0.0148 31 1 3.7999 -7.4127 2.3926 32 1 4.1683 -9.7248 3.3239 33 1 5.0688 -8.4289 4.1369 34 1 5.7955 -10.8821 4.5793 35 1 7.0604 -9.6897 4.2159 36 1 5.8731 -11.1079 1.8840 37 1 6.9011 -12.0751 2.9764 38 1 7.0709 -9.7785 0.3564 39 1 8.6285 -9.0841 0.8520 40 1 7.3470 -8.0368 2.8464 41 1 7.0153 -7.3488 1.2381 42 1 1.6955 -6.8457 0.4269 43 1 0.3581 -4.7882 0.2410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311735000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:29 Heat of formation + Delta-G solvation = -71.968167 kcal Electronic energy + Delta-G solvation = -22642.054208 eV Core-core repulsion = 19265.777473 eV Total energy + Delta-G solvation = -3376.276735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96262 -40.67278 -38.70004 -37.25709 -34.57881 -34.14034 -32.70576 -31.79335 -30.46889 -27.82316 -27.29026 -26.12837 -24.52347 -23.61628 -22.74327 -21.97034 -20.50629 -19.83673 -18.82599 -17.67506 -17.30521 -16.86659 -16.49488 -16.26540 -16.21283 -15.95795 -15.52026 -15.42469 -15.01964 -14.72582 -14.53814 -14.28790 -14.22222 -13.60116 -13.56316 -13.26716 -13.00417 -12.90743 -12.76891 -12.44640 -12.36157 -12.16126 -12.11823 -11.68674 -11.60976 -11.42467 -11.28338 -11.16934 -10.79644 -10.41182 -9.77768 -9.34533 -8.90548 -8.47730 -6.15858 0.60282 0.67668 1.34647 1.43725 1.52221 2.17505 2.76955 2.93925 3.09537 3.40142 3.52096 3.75888 3.88057 4.05252 4.06394 4.10029 4.17942 4.20898 4.22746 4.46962 4.50142 4.55433 4.60130 4.62546 4.69449 4.70804 4.82033 4.83872 4.92590 5.08642 5.14390 5.15364 5.15958 5.20377 5.28673 5.30487 5.45300 5.57268 5.71985 5.81917 6.02698 6.13308 6.25141 6.49807 6.69884 6.97149 7.78015 8.75568 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033885 B = 0.002619 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.134498 B =10687.531711 C =11019.084330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.114 3.886 11 C -0.244 4.244 12 C -0.050 4.050 13 C -0.157 4.157 14 C 0.123 3.877 15 N -0.691 5.691 16 C 0.088 3.912 17 H 0.042 0.958 18 C -0.121 4.121 19 C -0.144 4.144 20 C 0.061 3.939 21 O -0.402 6.402 22 C 0.076 3.924 23 C -0.149 4.149 24 C -0.059 4.059 25 C -0.205 4.205 26 H 0.273 0.727 27 H 0.116 0.884 28 H 0.134 0.866 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.343 0.657 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.873 -21.271 4.505 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.264 4.264 12 C -0.069 4.069 13 C -0.158 4.158 14 C -0.005 4.005 15 N -0.323 5.323 16 C -0.021 4.021 17 H 0.060 0.940 18 C -0.159 4.159 19 C -0.183 4.183 20 C -0.014 4.014 21 O -0.320 6.320 22 C -0.002 4.002 23 C -0.188 4.188 24 C -0.078 4.078 25 C -0.224 4.224 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.152 0.848 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.161 0.839 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.164 0.836 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.173 -20.748 4.560 25.538 hybrid contribution -1.130 0.776 -0.323 1.408 sum 13.044 -19.972 4.237 24.228 Atomic orbital electron populations 1.70180 1.08009 1.28803 1.48955 1.26585 0.96859 1.02729 0.95871 0.84590 0.77789 0.74574 0.79287 1.18729 1.19528 1.17754 1.21809 0.92478 0.81489 1.53185 0.88230 1.83937 1.35964 1.12607 1.81451 1.19952 0.91582 0.88001 0.94137 1.21254 0.93129 1.00010 1.11969 1.20888 0.99575 0.90985 0.95442 1.19611 0.93237 0.95059 1.07940 1.20643 0.98055 0.92470 0.89329 1.60664 1.24687 1.37090 1.09880 1.21538 0.93873 0.89500 0.97162 0.94018 1.22053 0.99267 0.98576 0.96048 1.21894 0.98969 0.98232 0.99160 1.22646 0.87275 0.96633 0.94841 1.86319 1.34336 1.49479 1.61890 1.21820 1.01246 0.86534 0.90610 1.22310 0.94848 0.99513 1.02083 1.20881 0.93329 0.96829 0.96747 1.20439 0.99906 0.90585 1.11463 0.91827 0.86607 0.84837 0.90220 0.93653 0.83865 0.91088 0.91677 0.89409 0.91594 0.92246 0.87476 0.94306 0.88306 0.91669 0.90872 0.83584 0.86931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.08 13.67 21.61 0.30 -56.79 16 2 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 3 Si 1.02 43.34 29.55 68.60 2.03 45.37 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.41 -24.44 9.49 67.92 0.64 -23.79 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -14.22 9.76 -22.72 -0.22 -14.44 16 10 C 0.11 5.73 6.65 22.58 0.15 5.88 16 11 C -0.24 -10.84 9.17 22.39 0.21 -10.64 16 12 C -0.05 -1.77 9.69 22.25 0.22 -1.55 16 13 C -0.16 -4.81 5.40 -19.84 -0.11 -4.92 16 14 C 0.12 2.76 5.51 85.56 0.47 3.23 16 15 N -0.69 -14.59 6.19 -496.87 -3.08 -17.67 16 16 C 0.09 1.50 2.03 44.67 0.09 1.59 16 17 H 0.04 0.68 6.19 -2.39 -0.01 0.67 16 18 C -0.12 -1.75 5.13 31.16 0.16 -1.59 16 19 C -0.14 -1.81 5.43 30.13 0.16 -1.65 16 20 C 0.06 0.77 6.48 71.36 0.46 1.23 16 21 O -0.40 -6.91 9.90 -97.29 -0.96 -7.88 16 22 C 0.08 1.18 6.39 72.54 0.46 1.65 16 23 C -0.15 -2.61 5.25 30.49 0.16 -2.45 16 24 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16 25 C -0.20 -8.70 9.99 22.39 0.22 -8.48 16 26 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 28 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 29 H 0.08 1.70 7.36 -2.38 -0.02 1.68 16 30 H 0.05 0.90 7.98 -2.39 -0.02 0.88 16 31 H 0.34 7.20 8.28 -89.70 -0.74 6.46 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 1.01 7.31 -2.39 -0.02 0.99 16 36 H 0.06 0.69 6.68 -2.39 -0.02 0.68 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.04 0.56 7.68 -2.39 -0.02 0.55 16 39 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.06 1.26 7.16 -2.39 -0.02 1.25 16 41 H 0.07 1.40 7.17 -2.39 -0.02 1.39 16 42 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -70.24 342.03 2.32 -67.92 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.27 Total: 27.57 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 3.99 Total: -44.09 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -2.78 Total: -74.46 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -1.19 Total: -22.32 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.24 2.32 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311735000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.048 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds