Wall clock time and date at job start Tue Mar 31 2020 08:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48502 * 109.46936 * 274.97482 * 3 2 1 5 5 H 1.48497 * 109.47261 * 34.97266 * 3 2 1 6 6 H 1.48501 * 109.47415 * 154.97858 * 3 2 1 7 7 C 1.39944 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00287 * 161.00693 * 7 2 1 9 9 C 1.41396 * 119.99965 * 341.00297 * 7 2 1 10 10 C 1.40721 * 120.24373 * 333.80830 * 9 7 2 11 11 C 1.37610 * 119.74466 * 179.78879 * 10 9 7 12 12 C 1.38638 * 120.25111 * 0.49114 * 11 10 9 13 13 C 1.50695 * 119.75225 * 179.76060 * 12 11 10 14 14 N 1.46903 * 109.47480 * 269.98141 * 13 12 11 15 15 C 1.46898 * 111.00180 * 178.07816 * 14 13 12 16 16 C 1.52998 * 109.54583 * 300.83269 * 15 14 13 17 17 O 1.42905 * 109.46949 * 301.23819 * 16 15 14 18 18 C 1.53177 * 109.54283 * 180.65138 * 15 14 13 19 19 C 1.53283 * 109.06377 * 297.03419 * 18 15 14 20 20 O 1.42907 * 109.45774 * 302.44406 * 19 18 15 21 21 C 1.42901 * 114.09644 * 61.16120 * 20 19 18 22 22 C 1.53091 * 109.41520 * 298.83865 * 21 20 19 23 23 C 1.38638 * 120.49838 * 359.74437 * 12 11 10 24 24 C 1.37615 * 120.24598 * 0.02562 * 23 12 11 25 25 H 0.96996 * 120.00088 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.12285 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.87823 * 180.23397 * 11 10 9 28 28 H 1.09007 * 109.47178 * 29.98040 * 13 12 11 29 29 H 1.08997 * 109.47459 * 149.98136 * 13 12 11 30 30 H 1.00893 * 110.99880 * 302.03783 * 14 13 12 31 31 H 1.09000 * 109.47086 * 61.23395 * 16 15 14 32 32 H 1.09002 * 109.47273 * 181.23646 * 16 15 14 33 33 H 0.96699 * 114.00227 * 180.02562 * 17 16 15 34 34 H 1.09006 * 109.51986 * 57.02147 * 18 15 14 35 35 H 1.08999 * 109.52325 * 177.20791 * 18 15 14 36 36 H 1.08997 * 109.45540 * 182.45113 * 19 18 15 37 37 H 1.08997 * 109.47178 * 62.44672 * 19 18 15 38 38 H 1.08997 * 109.47559 * 178.85778 * 21 20 19 39 39 H 1.08998 * 109.48937 * 58.82807 * 21 20 19 40 40 H 1.09007 * 109.52183 * 297.70627 * 22 21 20 41 41 H 1.08999 * 109.57443 * 177.54721 * 22 21 20 42 42 H 1.08002 * 119.87300 * 179.97438 * 23 12 11 43 43 H 1.08004 * 120.12537 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3845 2.1071 -1.3948 5 1 1.4962 2.6201 0.8025 6 1 3.5884 1.4122 0.5922 7 6 2.0080 -1.2119 -0.0005 8 1 3.0440 -1.2373 -0.3050 9 6 1.3588 -2.4033 0.3975 10 6 0.2656 -2.3532 1.2823 11 6 -0.3614 -3.5187 1.6595 12 6 0.0865 -4.7397 1.1793 13 6 -0.6050 -6.0095 1.6040 14 7 0.0320 -6.5307 2.8208 15 6 -0.6462 -7.7460 3.2909 16 6 -2.1149 -7.4321 3.5829 17 8 -2.1948 -6.4023 4.5704 18 6 0.0335 -8.2508 4.5674 19 6 1.4816 -8.6361 4.2448 20 8 1.4924 -9.6261 3.2142 21 6 0.9111 -9.1927 1.9828 22 6 -0.5585 -8.8310 2.2133 23 6 1.1656 -4.8014 0.3111 24 6 1.8048 -3.6483 -0.0832 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0823 -1.4034 1.6607 27 1 -1.2029 -3.4824 2.3354 28 1 -1.6560 -5.8011 1.8049 29 1 -0.5271 -6.7496 0.8077 30 1 1.0150 -6.7005 2.6700 31 1 -2.6036 -7.0969 2.6681 32 1 -2.6117 -8.3292 3.9524 33 1 -3.0987 -6.1519 4.8055 34 1 0.0231 -7.4636 5.3214 35 1 -0.5002 -9.1237 4.9435 36 1 1.9584 -9.0372 5.1391 37 1 2.0256 -7.7540 3.9072 38 1 0.9770 -9.9948 1.2476 39 1 1.4474 -8.3178 1.6154 40 1 -1.1042 -9.7156 2.5419 41 1 -0.9929 -8.4589 1.2855 42 1 1.5064 -5.7581 -0.0564 43 1 2.6456 -3.6986 -0.7593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330855283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:37 Heat of formation + Delta-G solvation = -79.285090 kcal Electronic energy + Delta-G solvation = -23694.462910 eV Core-core repulsion = 20317.868890 eV Total energy + Delta-G solvation = -3376.594020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -40.24899 -37.66843 -36.96197 -35.21306 -33.75482 -31.86171 -31.13359 -29.44100 -29.12747 -27.34065 -26.11446 -23.93388 -23.14054 -22.44539 -20.93818 -19.88200 -18.82751 -17.31018 -17.26230 -16.60304 -16.03162 -15.74555 -15.31044 -15.13514 -14.64882 -14.23276 -14.06826 -13.74804 -13.40486 -13.29889 -12.99180 -12.54334 -12.40177 -12.27506 -11.91200 -11.81374 -11.56828 -11.37105 -11.34984 -11.04947 -10.91805 -10.74606 -10.47588 -10.39383 -10.27997 -9.85107 -9.61676 -9.46017 -9.33652 -9.09944 -7.98671 -7.40813 -7.27447 -6.75197 -4.32104 2.76655 3.08229 3.10307 3.12426 3.20146 3.79354 3.95214 4.10581 4.44887 4.66127 4.69422 4.80421 4.90986 5.00837 5.19652 5.25995 5.32417 5.47255 5.52530 5.61797 5.65836 5.72977 5.74715 5.82828 5.89320 5.99675 6.09706 6.21371 6.27597 6.39772 6.49722 6.98554 7.10012 7.11221 7.30826 7.37492 7.41986 7.63674 7.68889 7.76123 7.91356 8.08244 8.17674 8.32971 8.67181 8.92109 9.00657 10.20843 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025595 B = 0.003584 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.718438 B = 7811.138927 C = 8286.210916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.467 4.467 8 H 0.077 0.923 9 C 0.115 3.885 10 C -0.166 4.166 11 C -0.075 4.075 12 C -0.210 4.210 13 C 0.122 3.878 14 N -0.659 5.659 15 C 0.114 3.886 16 C 0.092 3.908 17 O -0.549 6.549 18 C -0.135 4.135 19 C 0.055 3.945 20 O -0.385 6.385 21 C 0.062 3.938 22 C -0.188 4.188 23 C -0.087 4.087 24 C -0.227 4.227 25 H 0.280 0.720 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.336 0.664 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.370 0.630 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -13.789 6.041 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.095 0.905 9 C 0.112 3.888 10 C -0.186 4.186 11 C -0.094 4.094 12 C -0.212 4.212 13 C -0.006 4.006 14 N -0.292 5.292 15 C 0.023 3.977 16 C 0.014 3.986 17 O -0.352 6.352 18 C -0.173 4.173 19 C -0.022 4.022 20 O -0.304 6.304 21 C -0.015 4.015 22 C -0.227 4.227 23 C -0.106 4.106 24 C -0.247 4.247 25 H 0.091 0.909 26 H 0.130 0.870 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.156 0.844 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.216 0.784 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.461 -13.433 6.439 15.294 hybrid contribution -0.219 0.459 -0.854 0.994 sum -3.680 -12.974 5.585 14.597 Atomic orbital electron populations 1.69834 1.07610 1.29177 1.35182 1.25882 0.94659 1.01212 0.92194 0.86368 0.80888 0.80898 0.78979 1.19648 1.20034 1.18419 1.19573 0.98552 0.91501 1.39998 0.90526 1.17606 0.90802 0.91942 0.88430 1.21229 0.99943 0.96676 1.00737 1.20479 0.98349 0.92442 0.98121 1.18867 1.02296 0.92965 1.07050 1.20637 0.97710 0.93752 0.88475 1.60762 1.06171 1.27670 1.34573 1.20955 0.93749 0.89017 0.94027 1.22137 0.95301 0.89810 0.91393 1.86639 1.31462 1.57212 1.59934 1.22151 0.95977 1.01318 0.97841 1.22706 0.96405 0.92034 0.91053 1.87903 1.80913 1.39821 1.21757 1.22507 0.92046 1.00275 0.86655 1.22870 0.98516 1.00228 1.01122 1.20343 0.95976 0.96161 0.98077 1.20926 1.04337 0.93007 1.06399 0.90937 0.86998 0.89450 0.91779 0.96390 0.84392 0.93610 0.94163 0.78447 0.89125 0.91411 0.88880 0.92458 0.88838 0.92949 0.90823 0.90249 0.90112 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.72 11.15 55.55 0.62 -20.10 16 2 C 0.08 1.99 5.10 -17.34 -0.09 1.90 16 3 Si 0.90 18.82 29.60 -169.99 -5.03 13.79 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.47 -12.55 9.04 -37.74 -0.34 -12.89 16 8 H 0.08 1.98 7.91 -52.48 -0.42 1.57 16 9 C 0.11 3.09 5.55 -106.82 -0.59 2.50 16 10 C -0.17 -4.38 8.69 -38.87 -0.34 -4.72 16 11 C -0.07 -1.78 9.67 -39.66 -0.38 -2.16 16 12 C -0.21 -4.53 5.43 -104.33 -0.57 -5.10 16 13 C 0.12 2.10 5.02 -4.98 -0.02 2.08 16 14 N -0.66 -10.39 5.85 -101.03 -0.59 -10.98 16 15 C 0.11 1.46 0.47 -131.42 -0.06 1.40 16 16 C 0.09 1.09 5.52 37.16 0.20 1.30 16 17 O -0.55 -7.16 12.95 -35.23 -0.46 -7.62 16 18 C -0.13 -1.61 4.96 -26.49 -0.13 -1.75 16 19 C 0.05 0.64 6.58 37.30 0.25 0.89 16 20 O -0.39 -4.94 10.77 -35.23 -0.38 -5.31 16 21 C 0.06 0.72 6.58 37.20 0.24 0.97 16 22 C -0.19 -2.12 4.66 -26.59 -0.12 -2.24 16 23 C -0.09 -1.92 9.67 -39.66 -0.38 -2.31 16 24 C -0.23 -5.61 9.80 -38.88 -0.38 -5.99 16 25 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 26 H 0.11 3.06 6.34 -52.49 -0.33 2.72 16 27 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.06 1.11 6.16 -51.93 -0.32 0.79 16 29 H 0.02 0.29 6.31 -51.93 -0.33 -0.04 16 30 H 0.34 5.38 5.45 -39.30 -0.21 5.17 16 31 H 0.05 0.55 6.42 -51.93 -0.33 0.22 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.37 3.18 9.12 45.56 0.42 3.59 16 34 H 0.09 1.20 7.82 -51.93 -0.41 0.79 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.72 6.74 -51.93 -0.35 0.37 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.66 6.90 -51.93 -0.36 0.30 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.90 6.33 -51.93 -0.33 0.57 16 42 H 0.08 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -29.28 337.04 -8.97 -38.25 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -5.49 Total: 13.03 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -2.72 Total: -26.13 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.03 Total: -31.08 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.84 Total: -12.93 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.28 -8.97 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330855283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.039 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds