Wall clock time and date at job start Tue Mar 31 2020 08:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48502 * 109.46936 * 274.97482 * 3 2 1 5 5 H 1.48497 * 109.47261 * 34.97266 * 3 2 1 6 6 H 1.48501 * 109.47415 * 154.97858 * 3 2 1 7 7 C 1.39944 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00287 * 161.00693 * 7 2 1 9 9 C 1.41396 * 119.99965 * 341.00297 * 7 2 1 10 10 C 1.40721 * 120.24373 * 333.80830 * 9 7 2 11 11 C 1.37610 * 119.74466 * 179.78879 * 10 9 7 12 12 C 1.38638 * 120.25111 * 0.49114 * 11 10 9 13 13 C 1.50695 * 119.75225 * 179.76060 * 12 11 10 14 14 N 1.46903 * 109.47480 * 269.98141 * 13 12 11 15 15 C 1.46898 * 111.00180 * 178.07816 * 14 13 12 16 16 C 1.52998 * 109.54583 * 300.83269 * 15 14 13 17 17 O 1.42905 * 109.46949 * 301.23819 * 16 15 14 18 18 C 1.53177 * 109.54283 * 180.65138 * 15 14 13 19 19 C 1.53283 * 109.06377 * 297.03419 * 18 15 14 20 20 O 1.42907 * 109.45774 * 302.44406 * 19 18 15 21 21 C 1.42901 * 114.09644 * 61.16120 * 20 19 18 22 22 C 1.53091 * 109.41520 * 298.83865 * 21 20 19 23 23 C 1.38638 * 120.49838 * 359.74437 * 12 11 10 24 24 C 1.37615 * 120.24598 * 0.02562 * 23 12 11 25 25 H 0.96996 * 120.00088 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.12285 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.87823 * 180.23397 * 11 10 9 28 28 H 1.09007 * 109.47178 * 29.98040 * 13 12 11 29 29 H 1.08997 * 109.47459 * 149.98136 * 13 12 11 30 30 H 1.00893 * 110.99880 * 302.03783 * 14 13 12 31 31 H 1.09000 * 109.47086 * 61.23395 * 16 15 14 32 32 H 1.09002 * 109.47273 * 181.23646 * 16 15 14 33 33 H 0.96699 * 114.00227 * 180.02562 * 17 16 15 34 34 H 1.09006 * 109.51986 * 57.02147 * 18 15 14 35 35 H 1.08999 * 109.52325 * 177.20791 * 18 15 14 36 36 H 1.08997 * 109.45540 * 182.45113 * 19 18 15 37 37 H 1.08997 * 109.47178 * 62.44672 * 19 18 15 38 38 H 1.08997 * 109.47559 * 178.85778 * 21 20 19 39 39 H 1.08998 * 109.48937 * 58.82807 * 21 20 19 40 40 H 1.09007 * 109.52183 * 297.70627 * 22 21 20 41 41 H 1.08999 * 109.57443 * 177.54721 * 22 21 20 42 42 H 1.08002 * 119.87300 * 179.97438 * 23 12 11 43 43 H 1.08004 * 120.12537 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3845 2.1071 -1.3948 5 1 1.4962 2.6201 0.8025 6 1 3.5884 1.4122 0.5922 7 6 2.0080 -1.2119 -0.0005 8 1 3.0440 -1.2373 -0.3050 9 6 1.3588 -2.4033 0.3975 10 6 0.2656 -2.3532 1.2823 11 6 -0.3614 -3.5187 1.6595 12 6 0.0865 -4.7397 1.1793 13 6 -0.6050 -6.0095 1.6040 14 7 0.0320 -6.5307 2.8208 15 6 -0.6462 -7.7460 3.2909 16 6 -2.1149 -7.4321 3.5829 17 8 -2.1948 -6.4023 4.5704 18 6 0.0335 -8.2508 4.5674 19 6 1.4816 -8.6361 4.2448 20 8 1.4924 -9.6261 3.2142 21 6 0.9111 -9.1927 1.9828 22 6 -0.5585 -8.8310 2.2133 23 6 1.1656 -4.8014 0.3111 24 6 1.8048 -3.6483 -0.0832 25 1 -0.4850 0.8400 -0.0004 26 1 -0.0823 -1.4034 1.6607 27 1 -1.2029 -3.4824 2.3354 28 1 -1.6560 -5.8011 1.8049 29 1 -0.5271 -6.7496 0.8077 30 1 1.0150 -6.7005 2.6700 31 1 -2.6036 -7.0969 2.6681 32 1 -2.6117 -8.3292 3.9524 33 1 -3.0987 -6.1519 4.8055 34 1 0.0231 -7.4636 5.3214 35 1 -0.5002 -9.1237 4.9435 36 1 1.9584 -9.0372 5.1391 37 1 2.0256 -7.7540 3.9072 38 1 0.9770 -9.9948 1.2476 39 1 1.4474 -8.3178 1.6154 40 1 -1.1042 -9.7156 2.5419 41 1 -0.9929 -8.4589 1.2855 42 1 1.5064 -5.7581 -0.0564 43 1 2.6456 -3.6986 -0.7593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330855283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:31 Heat of formation + Delta-G solvation = -99.740191 kcal Electronic energy + Delta-G solvation = -23695.349910 eV Core-core repulsion = 20317.868890 eV Total energy + Delta-G solvation = -3377.481020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.25233 -39.42378 -37.99291 -36.42816 -35.46159 -33.27389 -32.08491 -31.23405 -30.84511 -28.29600 -27.77985 -25.20616 -24.36070 -23.46819 -22.84117 -21.65186 -19.84304 -19.20429 -18.24059 -17.69476 -17.15155 -16.94369 -16.75325 -16.24704 -15.97720 -15.61961 -15.53915 -15.16065 -14.80494 -14.58943 -14.19766 -13.99756 -13.79553 -13.50154 -13.35414 -13.31463 -13.10559 -12.73925 -12.70388 -12.42085 -12.29004 -12.21101 -11.99214 -11.67270 -11.41812 -11.28699 -11.18966 -10.98688 -10.77084 -10.43823 -9.32962 -9.29192 -9.07711 -8.64211 -6.31871 0.96599 1.16053 1.37345 1.47978 1.53849 2.21048 2.69721 2.90800 3.18953 3.45135 3.74696 3.77405 3.86109 4.00874 4.13879 4.23527 4.30490 4.33751 4.43197 4.48442 4.54841 4.58246 4.63681 4.68685 4.74073 4.77500 4.88270 4.91225 5.06031 5.10466 5.15570 5.17726 5.26081 5.38255 5.47469 5.72881 5.95576 6.10979 6.19013 6.21904 6.31935 6.40863 6.50428 6.72370 6.95582 7.01589 7.05732 8.34450 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025595 B = 0.003584 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.718438 B = 7811.138927 C = 8286.210916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.507 4.507 8 H 0.073 0.927 9 C 0.081 3.919 10 C -0.190 4.190 11 C -0.083 4.083 12 C -0.196 4.196 13 C 0.132 3.868 14 N -0.671 5.671 15 C 0.110 3.890 16 C 0.090 3.910 17 O -0.574 6.574 18 C -0.128 4.128 19 C 0.054 3.946 20 O -0.395 6.395 21 C 0.058 3.942 22 C -0.180 4.180 23 C -0.085 4.085 24 C -0.243 4.243 25 H 0.287 0.713 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.333 0.667 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.387 0.613 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.111 0.889 39 H 0.041 0.959 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.114 0.886 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 -15.519 6.321 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.537 4.537 8 H 0.091 0.909 9 C 0.079 3.921 10 C -0.210 4.210 11 C -0.101 4.101 12 C -0.198 4.198 13 C 0.004 3.996 14 N -0.303 5.303 15 C 0.019 3.981 16 C 0.012 3.988 17 O -0.380 6.380 18 C -0.166 4.166 19 C -0.022 4.022 20 O -0.314 6.314 21 C -0.018 4.018 22 C -0.220 4.220 23 C -0.104 4.104 24 C -0.262 4.262 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.153 0.847 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.063 0.937 38 H 0.129 0.871 39 H 0.059 0.941 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.132 0.868 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.875 -15.184 6.724 17.053 hybrid contribution -0.160 0.824 -0.888 1.222 sum -4.035 -14.361 5.836 16.018 Atomic orbital electron populations 1.69884 1.09048 1.30493 1.35857 1.26721 0.95425 1.04423 0.91163 0.85249 0.79233 0.76158 0.79404 1.18599 1.19023 1.18372 1.19815 0.98765 0.92884 1.42228 0.90858 1.17938 0.91670 0.93113 0.89352 1.21173 1.01013 0.96850 1.01929 1.20679 0.98521 0.92634 0.98304 1.19334 1.01263 0.94114 1.05042 1.20491 0.97248 0.92036 0.89816 1.60639 1.06185 1.29956 1.33546 1.21112 0.94128 0.88222 0.94688 1.22218 0.94726 0.90598 0.91300 1.86588 1.33400 1.57784 1.60261 1.22081 0.96182 1.01286 0.97079 1.22748 0.96354 0.91633 0.91496 1.87898 1.81142 1.40123 1.22205 1.22621 0.92055 1.00535 0.86633 1.22801 0.98430 1.00204 1.00534 1.20676 0.95514 0.96733 0.97474 1.21152 1.04951 0.93326 1.06814 0.90219 0.89040 0.88463 0.91506 0.94526 0.84699 0.93808 0.91656 0.76455 0.90614 0.89932 0.87270 0.93726 0.87069 0.94113 0.89194 0.90058 0.86780 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.60 11.15 21.83 0.24 -44.36 16 2 C 0.04 1.95 5.10 85.26 0.43 2.38 16 3 Si 0.98 39.29 29.60 68.60 2.03 41.32 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.51 -28.35 9.04 23.46 0.21 -28.13 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.08 4.55 5.55 -21.29 -0.12 4.43 16 10 C -0.19 -10.39 8.69 22.73 0.20 -10.19 16 11 C -0.08 -3.95 9.67 22.22 0.21 -3.74 16 12 C -0.20 -8.26 5.43 -19.67 -0.11 -8.36 16 13 C 0.13 4.26 5.02 85.55 0.43 4.69 16 14 N -0.67 -19.88 5.85 -473.56 -2.77 -22.65 16 15 C 0.11 2.51 0.47 3.65 0.00 2.51 16 16 C 0.09 1.88 5.52 71.98 0.40 2.28 16 17 O -0.57 -13.88 12.95 -148.98 -1.93 -15.81 16 18 C -0.13 -2.78 4.96 30.75 0.15 -2.63 16 19 C 0.05 1.17 6.58 72.08 0.47 1.65 16 20 O -0.39 -9.15 10.77 -148.98 -1.60 -10.75 16 21 C 0.06 1.20 6.58 72.01 0.47 1.67 16 22 C -0.18 -3.47 4.66 30.68 0.14 -3.33 16 23 C -0.09 -3.70 9.67 22.22 0.21 -3.48 16 24 C -0.24 -12.17 9.80 22.73 0.22 -11.95 16 25 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 26 H 0.09 5.27 6.34 -2.91 -0.02 5.25 16 27 H 0.10 4.37 8.06 -2.91 -0.02 4.34 16 28 H 0.07 2.15 6.16 -2.38 -0.01 2.14 16 29 H 0.04 1.07 6.31 -2.39 -0.02 1.05 16 30 H 0.33 10.16 5.45 -89.70 -0.49 9.67 16 31 H 0.04 0.93 6.42 -2.39 -0.02 0.92 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.39 5.95 9.12 -74.06 -0.68 5.28 16 34 H 0.08 1.89 7.82 -2.38 -0.02 1.87 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.04 1.07 6.74 -2.39 -0.02 1.06 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.04 0.93 6.90 -2.39 -0.02 0.91 16 40 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.08 1.55 6.33 -2.39 -0.02 1.54 16 42 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 43 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -64.36 337.04 -0.82 -65.18 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.13 Total: 39.27 kcal Atomic # 6 Polarization: -55.54 SS G_CDS: 3.34 Total: -52.20 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -2.53 Total: -67.01 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -3.53 Total: -26.56 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -64.36 -0.82 -65.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330855283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.562 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds