Wall clock time and date at job start Tue Mar 31 2020 07:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 119.99607 * 2 1 4 4 H 1.48503 * 109.47199 * 88.50984 * 3 2 1 5 5 H 1.48495 * 109.47556 * 328.50943 * 3 2 1 6 6 H 1.48496 * 109.46992 * 208.50735 * 3 2 1 7 7 C 1.38939 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00425 * 349.72185 * 7 2 1 9 9 N 1.37106 * 120.00170 * 169.71334 * 7 2 1 10 10 C 1.34770 * 120.00120 * 309.06300 * 9 7 2 11 11 O 1.21296 * 119.99911 * 174.04745 * 10 9 7 12 12 C 1.50695 * 120.00017 * 354.04696 * 10 9 7 13 13 H 1.09006 * 110.36910 * 58.57431 * 12 10 9 14 14 C 1.54605 * 110.41541 * 296.21607 * 12 10 9 15 15 C 1.55977 * 104.46532 * 240.89529 * 14 12 10 16 16 H 1.09007 * 116.08027 * 160.87793 * 15 14 12 17 17 C 1.55963 * 104.30498 * 289.95092 * 15 14 12 18 18 C 1.52167 * 104.86966 * 70.38726 * 17 15 14 19 19 O 1.20765 * 127.32902 * 179.73244 * 18 17 15 20 20 C 1.55930 * 110.41545 * 180.92539 * 12 10 9 21 21 H 1.09006 * 115.84798 * 318.02342 * 20 12 10 22 22 C 1.57018 * 100.60806 * 34.32928 * 15 14 12 23 23 C 1.46501 * 119.99717 * 129.05689 * 9 7 2 24 24 C 1.54262 * 110.03307 * 57.91366 * 23 9 7 25 25 C 1.54968 * 104.16054 * 217.13610 * 24 23 9 26 26 C 1.54890 * 102.77593 * 37.88706 * 25 24 23 27 27 C 1.53880 * 110.03488 * 300.69207 * 23 9 7 28 28 H 0.96998 * 119.99904 * 179.97438 * 1 2 3 29 29 H 1.09003 * 110.43292 * 359.64048 * 14 12 10 30 30 H 1.09000 * 110.43903 * 122.14740 * 14 12 10 31 31 H 1.09007 * 110.35660 * 189.23057 * 17 15 14 32 32 H 1.08995 * 110.36523 * 311.42349 * 17 15 14 33 33 H 1.09000 * 112.08538 * 62.59660 * 22 15 14 34 34 H 1.08999 * 112.08539 * 189.28369 * 22 15 14 35 35 H 1.09001 * 110.01414 * 179.30270 * 23 9 7 36 36 H 1.09001 * 110.48959 * 335.77766 * 24 23 9 37 37 H 1.09001 * 110.48617 * 98.42683 * 24 23 9 38 38 H 1.08998 * 110.71828 * 279.57213 * 25 24 23 39 39 H 1.09001 * 110.76185 * 156.22516 * 25 24 23 40 40 H 1.09008 * 110.48359 * 203.40589 * 26 25 24 41 41 H 1.08997 * 110.59918 * 80.82261 * 26 25 24 42 42 H 1.08990 * 110.03272 * 238.57118 * 27 23 9 43 43 H 1.08998 * 110.02911 * 359.95810 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4640 2.0647 1.3996 5 1 1.4616 2.6434 -0.7313 6 1 3.5610 1.4314 -0.6682 7 6 2.0089 -1.2032 0.0005 8 1 1.4820 -2.1310 0.1678 9 7 3.3634 -1.2129 -0.2115 10 6 3.8839 -0.5664 -1.2733 11 8 5.0871 -0.4829 -1.4025 12 6 2.9711 0.0527 -2.3002 13 1 2.3142 0.7854 -1.8312 14 6 2.1399 -1.0397 -3.0114 15 6 2.5467 -0.9233 -4.5127 16 1 2.3325 -1.7915 -5.1360 17 6 1.9200 0.4270 -4.9781 18 6 2.7392 1.5002 -4.2761 19 8 2.5998 2.6971 -4.3559 20 6 3.8043 0.7187 -3.4375 21 1 4.6807 1.2822 -3.1171 22 6 4.0577 -0.5201 -4.3722 23 6 4.2450 -1.9258 0.7163 24 6 3.8392 -3.4120 0.7943 25 6 4.0561 -3.7867 2.2823 26 6 3.5963 -2.5093 3.0277 27 6 4.0912 -1.3519 2.1358 28 1 -0.4850 -0.8400 -0.0004 29 1 2.3956 -2.0256 -2.6231 30 1 1.0740 -0.8466 -2.8898 31 1 2.0054 0.5317 -6.0598 32 1 0.8751 0.4852 -4.6735 33 1 4.6441 -1.2940 -3.8771 34 1 4.4949 -0.2296 -5.3276 35 1 5.2808 -1.8383 0.3885 36 1 2.7920 -3.5366 0.5186 37 1 4.4786 -4.0163 0.1508 38 1 5.1086 -3.9911 2.4789 39 1 3.4374 -4.6400 2.5600 40 1 4.0585 -2.4557 4.0135 41 1 2.5101 -2.4862 3.1150 42 1 5.0524 -0.9868 2.4971 43 1 3.3612 -0.5425 2.1342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333974182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:46 Heat of formation + Delta-G solvation = -72.434817 kcal Electronic energy + Delta-G solvation = -25423.515899 eV Core-core repulsion = 22047.218929 eV Total energy + Delta-G solvation = -3376.296970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.27304 -40.58751 -38.87953 -37.93975 -36.13985 -33.71140 -31.64987 -29.75437 -29.55323 -28.67989 -27.92004 -26.12059 -24.00259 -21.74084 -21.41313 -21.00757 -20.96988 -19.59340 -19.23955 -17.92796 -17.73297 -17.04164 -16.64477 -16.39534 -16.04974 -15.91270 -15.34866 -15.22482 -14.97372 -14.48432 -14.36199 -14.07227 -14.00104 -13.80043 -13.15112 -12.82239 -12.66425 -12.52819 -12.40394 -12.17762 -12.00189 -11.95671 -11.90135 -11.87244 -11.71255 -11.60488 -11.42150 -11.41087 -11.09483 -11.01219 -10.58512 -10.24636 -9.64072 -8.79282 -6.27858 0.80908 1.11891 1.27148 1.35141 1.92756 2.11406 2.60548 2.93397 2.97793 3.39654 3.46139 3.67116 3.77848 3.84712 4.00426 4.06370 4.08548 4.17051 4.31499 4.37838 4.48320 4.57682 4.63810 4.70015 4.72028 4.76207 4.78210 4.86453 4.88313 5.00192 5.03471 5.09120 5.10125 5.16369 5.19477 5.29583 5.31015 5.35798 5.40989 5.52188 5.76191 6.01815 6.37480 6.59108 6.72617 7.44587 7.83808 8.52689 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019608 B = 0.007120 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.658439 B = 3931.881473 C = 4409.050735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.017 3.983 3 Si 1.041 2.959 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.375 4.375 8 H 0.073 0.927 9 N -0.472 5.472 10 C 0.500 3.500 11 O -0.612 6.612 12 C -0.092 4.092 13 H 0.053 0.947 14 C -0.091 4.091 15 C -0.078 4.078 16 H 0.154 0.846 17 C -0.165 4.165 18 C 0.360 3.640 19 O -0.485 6.485 20 C -0.149 4.149 21 H 0.097 0.903 22 C -0.101 4.101 23 C 0.119 3.881 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.111 4.111 27 C -0.130 4.130 28 H 0.275 0.725 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 -7.495 -4.948 10.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.189 4.189 3 Si 0.870 3.130 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.504 4.504 8 H 0.091 0.909 9 N -0.193 5.193 10 C 0.290 3.710 11 O -0.498 6.498 12 C -0.113 4.113 13 H 0.071 0.929 14 C -0.128 4.128 15 C -0.096 4.096 16 H 0.171 0.829 17 C -0.202 4.202 18 C 0.238 3.762 19 O -0.360 6.360 20 C -0.168 4.168 21 H 0.115 0.885 22 C -0.138 4.138 23 C 0.016 3.984 24 C -0.159 4.159 25 C -0.147 4.147 26 C -0.149 4.149 27 C -0.168 4.168 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.154 0.846 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.920 -5.215 -5.010 8.747 hybrid contribution -0.245 -0.932 0.726 1.206 sum 4.675 -6.147 -4.284 8.831 Atomic orbital electron populations 1.70804 1.06756 1.30833 1.45360 1.26554 0.96436 1.02069 0.93814 0.84167 0.76107 0.75676 0.77015 1.21470 1.21478 1.19530 1.19920 0.81676 0.94460 1.54320 0.90930 1.43921 1.06848 1.48039 1.20457 1.20436 0.87956 0.80294 0.82290 1.90492 1.16443 1.64553 1.78328 1.22242 0.96194 0.98216 0.94695 0.92887 1.22457 0.98581 0.97107 0.94700 1.23737 0.93793 0.97250 0.94778 0.82874 1.23160 1.00427 0.93403 1.03240 1.26934 0.83311 0.88766 0.77238 1.90343 1.68355 1.18561 1.58759 1.24747 0.97408 0.98765 0.95921 0.88513 1.23518 0.97056 0.94567 0.98669 1.21900 0.94047 0.92811 0.89640 1.22580 1.01279 0.93987 0.98073 1.22416 1.01925 0.97230 0.93090 1.22219 1.00229 0.94049 0.98364 1.22394 1.00471 0.99069 0.94883 0.91432 0.91456 0.91685 0.84558 0.87826 0.90646 0.87821 0.90964 0.92280 0.91497 0.89999 0.90301 0.90000 0.93027 0.91443 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.90 13.69 21.66 0.30 -48.61 16 2 C 0.02 0.89 4.56 84.92 0.39 1.28 16 3 Si 1.04 52.19 24.40 68.60 1.67 53.86 16 4 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 5 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 6 H -0.27 -13.58 4.53 99.48 0.45 -13.13 16 7 C -0.38 -18.11 6.64 84.04 0.56 -17.55 16 8 H 0.07 3.69 6.87 -2.91 -0.02 3.67 16 9 N -0.47 -21.45 1.99 -609.38 -1.21 -22.66 16 10 C 0.50 23.21 3.89 87.66 0.34 23.55 16 11 O -0.61 -30.30 14.95 -3.08 -0.05 -30.34 16 12 C -0.09 -3.91 0.79 -9.98 -0.01 -3.92 16 13 H 0.05 2.53 2.54 -2.38 -0.01 2.53 16 14 C -0.09 -3.18 4.72 32.17 0.15 -3.02 16 15 C -0.08 -1.90 5.19 -7.33 -0.04 -1.94 16 16 H 0.15 2.51 8.14 -2.38 -0.02 2.50 16 17 C -0.17 -4.15 6.11 31.35 0.19 -3.96 16 18 C 0.36 12.72 7.27 31.53 0.23 12.95 16 19 O -0.49 -20.32 17.99 -1.47 -0.03 -20.35 16 20 C -0.15 -5.53 4.14 -7.07 -0.03 -5.56 16 21 H 0.10 3.95 7.84 -2.38 -0.02 3.93 16 22 C -0.10 -2.79 6.34 33.50 0.21 -2.58 16 23 C 0.12 4.76 3.29 45.72 0.15 4.91 16 24 C -0.12 -4.01 6.42 31.70 0.20 -3.81 16 25 C -0.11 -2.88 6.91 31.91 0.22 -2.66 16 26 C -0.11 -3.33 6.83 31.67 0.22 -3.12 16 27 C -0.13 -4.82 6.28 31.32 0.20 -4.62 16 28 H 0.27 14.52 8.73 -92.71 -0.81 13.72 16 29 H 0.07 2.46 7.51 -2.39 -0.02 2.45 16 30 H 0.06 2.44 7.83 -2.39 -0.02 2.42 16 31 H 0.14 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.10 2.66 7.83 -2.39 -0.02 2.64 16 33 H 0.07 2.31 7.68 -2.39 -0.02 2.29 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 3.00 6.96 -2.39 -0.02 2.99 16 36 H 0.06 2.19 6.37 -2.39 -0.02 2.17 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.04 1.91 7.03 -2.39 -0.02 1.89 16 Total: -1.00 -63.91 321.60 4.38 -59.53 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.71 Total: 18.62 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 2.98 Total: -10.04 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -0.91 Total: -71.27 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -0.07 Total: -50.69 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 1.67 Total: 53.86 kcal Total: -63.91 4.38 -59.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333974182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.909 kcal (2) G-P(sol) polarization free energy of solvation -63.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds