Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 108.14396 * 2 1 4 4 C 1.45396 * 108.24554 * 117.06459 * 2 1 3 5 5 C 1.55291 * 109.84898 * 184.97664 * 4 2 1 6 6 S 1.79391 * 109.72558 * 288.76604 * 5 4 2 7 7 C 1.82423 * 106.81219 * 86.89265 * 6 5 4 8 8 C 1.54645 * 110.53843 * 319.26139 * 7 6 5 9 9 N 1.45421 * 108.32607 * 321.33220 * 8 7 6 10 10 C 1.46903 * 110.73493 * 228.07037 * 9 8 7 11 11 C 1.50697 * 109.47649 * 53.20303 * 10 9 8 12 12 C 1.38631 * 119.75104 * 269.72666 * 11 10 9 13 13 C 1.37618 * 120.25176 * 179.76362 * 12 11 10 14 14 C 1.40716 * 119.74222 * 0.48244 * 13 12 11 15 15 C 1.41394 * 120.24590 * 179.79219 * 14 13 12 16 16 H 1.07998 * 120.00234 * 204.37013 * 15 14 13 17 17 C 1.39952 * 119.99593 * 24.37260 * 15 14 13 18 18 N 1.30823 * 120.00109 * 17.87410 * 17 15 14 19 19 Si 1.86799 * 119.99823 * 197.86938 * 17 15 14 20 20 H 1.48495 * 109.47169 * 90.00106 * 19 17 15 21 21 H 1.48503 * 109.47255 * 210.00442 * 19 17 15 22 22 H 1.48504 * 109.47096 * 329.99914 * 19 17 15 23 23 C 1.40718 * 119.51068 * 359.76549 * 14 13 12 24 24 C 1.37616 * 119.74632 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.46970 * 300.00104 * 1 2 3 26 26 H 1.08996 * 109.47425 * 59.99422 * 1 2 3 27 27 H 1.09001 * 109.47467 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.40887 * 305.09518 * 4 2 1 29 29 H 1.09005 * 109.40621 * 64.94138 * 4 2 1 30 30 H 1.09002 * 109.42763 * 48.84909 * 5 4 2 31 31 H 1.08997 * 109.42656 * 168.73649 * 5 4 2 32 32 H 1.09004 * 109.25924 * 79.52827 * 7 6 5 33 33 H 1.08990 * 109.26288 * 198.98810 * 7 6 5 34 34 H 1.08999 * 109.64083 * 80.95745 * 8 7 6 35 35 H 1.08996 * 109.63514 * 201.36410 * 8 7 6 36 36 H 1.08999 * 109.46801 * 173.20335 * 10 9 8 37 37 H 1.08999 * 109.47288 * 293.19800 * 10 9 8 38 38 H 1.08002 * 119.87146 * 359.97438 * 12 11 10 39 39 H 1.07997 * 120.13104 * 180.28079 * 13 12 11 40 40 H 0.97001 * 119.99756 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.12735 * 180.02562 * 23 14 13 42 42 H 1.08002 * 119.87732 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8694 1.0357 0.0000 4 6 1.9852 -0.6283 1.2296 5 6 3.5323 -0.5360 1.3275 6 16 4.2818 -1.6375 0.1262 7 6 4.4142 -0.7036 -1.4353 8 6 3.1414 0.1425 -1.6710 9 7 1.9897 -0.6346 -1.2417 10 6 0.9364 -0.6125 -2.2655 11 6 1.5135 -1.0427 -3.5894 12 6 2.0427 -0.0936 -4.4502 13 6 2.5767 -0.4756 -5.6597 14 6 2.5750 -1.8344 -6.0256 15 6 3.1169 -2.2382 -7.2676 16 1 2.7866 -3.1578 -7.7275 17 6 4.0815 -1.4462 -7.9008 18 7 4.7356 -0.5416 -7.2186 19 14 4.4350 -1.6808 -9.7199 20 1 3.5458 -0.7963 -10.5151 21 1 5.8526 -1.3361 -9.9972 22 1 4.1876 -3.0965 -10.0937 23 6 2.0305 -2.7884 -5.1461 24 6 1.5057 -2.3840 -3.9399 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.5373 -0.1200 2.0835 29 1 1.6851 -1.6762 1.2336 30 1 3.8478 0.4879 1.1271 31 1 3.8499 -0.8236 2.3297 32 1 5.2807 -0.0440 -1.3874 33 1 4.5399 -1.4021 -2.2624 34 1 3.2002 1.0626 -1.0895 35 1 3.0530 0.3838 -2.7302 36 1 0.1366 -1.2952 -1.9787 37 1 0.5372 0.3979 -2.3543 38 1 2.0389 0.9492 -4.1691 39 1 2.9926 0.2649 -6.3268 40 1 5.4044 0.0071 -7.6575 41 1 2.0243 -3.8339 -5.4167 42 1 1.0869 -3.1144 -3.2635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335073612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = 35.973172 kcal Electronic energy + Delta-G solvation = -21570.341454 eV Core-core repulsion = 18641.498278 eV Total energy + Delta-G solvation = -2928.843176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -39.53900 -37.35493 -34.29455 -33.22203 -31.56943 -30.17736 -29.31997 -28.22952 -26.46663 -24.44253 -23.17312 -22.01046 -20.81011 -20.29146 -19.41514 -17.32075 -16.35700 -15.95751 -15.39112 -15.19374 -14.83152 -14.24917 -13.96841 -13.79634 -13.63754 -13.28445 -12.82984 -12.69649 -12.30380 -12.26875 -11.98481 -11.73299 -11.61075 -11.51463 -11.29221 -11.07920 -11.02230 -10.96234 -10.68115 -10.50285 -10.35546 -10.13345 -9.57434 -9.43373 -9.30712 -9.13300 -8.08228 -7.45720 -7.31500 -7.04918 -6.78777 -4.36960 2.08556 2.70429 3.02633 3.05985 3.09161 3.10702 3.15973 3.91211 4.21979 4.60565 4.66409 5.00064 5.17980 5.27951 5.29622 5.41652 5.46697 5.58577 5.63262 5.68670 5.69827 5.81853 5.90446 5.97035 6.01847 6.18877 6.22390 6.24705 6.32102 6.35475 6.40585 6.46016 6.92555 7.05664 7.22901 7.35216 7.39922 7.48292 7.59656 7.86990 8.03308 8.10677 8.28574 8.61471 8.87807 8.95420 10.15380 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.025178 B = 0.004244 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.814726 B = 6595.694438 C = 7091.230880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.063 3.937 3 H 0.040 0.960 4 C -0.101 4.101 5 C -0.091 4.091 6 S -0.243 6.243 7 C -0.062 4.062 8 C 0.020 3.980 9 N -0.485 5.485 10 C 0.113 3.887 11 C -0.214 4.214 12 C -0.099 4.099 13 C -0.165 4.165 14 C 0.113 3.887 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.077 3.923 18 N -0.792 5.792 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.227 4.227 24 C -0.065 4.065 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.280 0.720 41 H 0.091 0.909 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 3.818 11.883 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.046 4.046 3 H 0.058 0.942 4 C -0.141 4.141 5 C -0.240 4.240 6 S -0.016 6.016 7 C -0.211 4.211 8 C -0.110 4.110 9 N -0.208 5.208 10 C -0.013 4.013 11 C -0.216 4.216 12 C -0.118 4.118 13 C -0.185 4.185 14 C 0.111 3.889 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.418 5.418 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.247 4.247 24 C -0.083 4.083 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.604 2.450 12.129 12.645 hybrid contribution -0.262 2.120 -1.164 2.432 sum -2.866 4.570 10.965 12.220 Atomic orbital electron populations 1.22356 0.95490 1.02705 1.01872 1.20623 0.95304 0.96100 0.92551 0.94238 1.20835 0.93779 1.02981 0.96541 1.23474 0.98512 1.01513 1.00495 1.85876 1.79436 1.28430 1.07855 1.23956 0.99165 1.01428 0.96511 1.22964 0.90909 0.93240 1.03908 1.63589 1.06222 1.48604 1.02434 1.21046 0.92881 0.98049 0.89361 1.18891 1.12612 0.93977 0.96087 1.20463 0.99840 0.96077 0.95373 1.21261 1.03967 0.96509 0.96745 1.17612 0.88458 0.91191 0.91672 1.19624 1.19112 1.06879 1.03563 0.90462 1.25897 0.94416 0.93777 0.99990 1.69822 1.17444 1.17410 1.37092 0.86336 0.78024 0.79989 0.82534 1.19302 1.20323 1.18591 1.20986 1.10275 0.97609 0.95802 1.20333 0.98407 0.94079 0.95518 0.92926 0.91764 0.91643 0.91425 0.90070 0.90959 0.88622 0.91082 0.87463 0.94055 0.87850 0.91123 0.95535 0.89946 0.86578 0.90921 0.89119 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 7.82 37.16 0.29 -1.63 16 2 C 0.06 0.81 2.09 -71.33 -0.15 0.66 16 3 H 0.04 0.51 6.47 -51.93 -0.34 0.18 16 4 C -0.10 -1.18 4.91 -29.10 -0.14 -1.33 16 5 C -0.09 -1.11 5.97 38.37 0.23 -0.88 16 6 S -0.24 -3.78 21.11 -107.50 -2.27 -6.05 16 7 C -0.06 -1.02 6.84 38.02 0.26 -0.76 16 8 C 0.02 0.32 5.04 -3.76 -0.02 0.30 16 9 N -0.48 -7.71 4.00 -232.65 -0.93 -8.64 16 10 C 0.11 1.91 3.90 -4.98 -0.02 1.89 16 11 C -0.21 -4.42 4.74 -104.33 -0.49 -4.92 16 12 C -0.10 -2.17 7.62 -39.66 -0.30 -2.47 16 13 C -0.17 -4.14 8.70 -38.87 -0.34 -4.48 16 14 C 0.11 2.96 5.58 -106.82 -0.60 2.36 16 15 C -0.46 -12.13 9.05 -37.74 -0.34 -12.47 16 16 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 17 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 18 N -0.79 -20.10 10.95 55.55 0.61 -19.49 16 19 Si 0.91 18.50 29.60 -169.99 -5.03 13.47 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 24 C -0.06 -1.43 9.67 -39.66 -0.38 -1.81 16 25 H 0.05 0.51 8.07 -51.93 -0.42 0.09 16 26 H 0.06 0.77 5.88 -51.93 -0.31 0.46 16 27 H 0.06 0.77 7.59 -51.93 -0.39 0.38 16 28 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 29 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 30 H 0.07 0.85 7.97 -51.78 -0.41 0.43 16 31 H 0.10 1.01 8.14 -51.77 -0.42 0.58 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 34 H 0.04 0.61 6.41 -51.93 -0.33 0.27 16 35 H 0.10 1.90 3.88 -51.93 -0.20 1.70 16 36 H 0.07 1.16 6.91 -51.93 -0.36 0.80 16 37 H 0.03 0.43 6.62 -51.93 -0.34 0.09 16 38 H 0.08 1.65 7.41 -52.49 -0.39 1.26 16 39 H 0.12 3.03 6.15 -52.49 -0.32 2.71 16 40 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 41 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -26.10 330.10 -11.44 -37.54 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.32 Total: 7.81 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -2.48 Total: -29.61 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: -0.32 Total: -28.13 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 16 Polarization: -3.78 SS G_CDS: -2.27 Total: -6.05 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.10 -11.44 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335073612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.513 kcal (2) G-P(sol) polarization free energy of solvation -26.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds